data_5JHA # _model_server_result.job_id 5AZewI_JRA64mq0PPNtOEA _model_server_result.datetime_utc '2024-11-17 00:22:50' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5jha # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1201}' # _entry.id 5JHA # _exptl.entry_id 5JHA _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 458.865 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '[1-{4-[6-amino-4-(trifluoromethyl)pyridin-3-yl]-6-(morpholin-4-yl)pyrimidin-2-yl}-3-(chloromethyl)azetidin-3-yl]methanol' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 95.36 _cell.angle_gamma 90 _cell.entry_id 5JHA _cell.length_a 144.56 _cell.length_b 68.04 _cell.length_c 106.73 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5JHA _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C19 H22 Cl F3 N6 O2' _chem_comp.formula_weight 458.865 _chem_comp.id 6K7 _chem_comp.mon_nstd_flag . _chem_comp.name '[1-{4-[6-amino-4-(trifluoromethyl)pyridin-3-yl]-6-(morpholin-4-yl)pyrimidin-2-yl}-3-(chloromethyl)azetidin-3-yl]methanol' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag FAF CAG 6K7 sing 1 n n CAG FAK 6K7 sing 2 n n CAG FAB 6K7 sing 3 n n CAG CAH 6K7 sing 4 n n CBD CL 6K7 sing 5 n n CBD CBA 6K7 sing 6 n n CAC CAH 6K7 doub 7 n y CAC CAD 6K7 sing 8 n y CAH CAI 6K7 sing 9 n y CAZ CBA 6K7 sing 10 n n CAZ NAU 6K7 sing 11 n n CBA CBB 6K7 sing 12 n n CBA CAV 6K7 sing 13 n n NAA CAD 6K7 sing 14 n n CAD NAE 6K7 doub 15 n y CBB OBC 6K7 sing 16 n n NAU CAV 6K7 sing 17 n n NAU C2 6K7 sing 18 n n CAI C6 6K7 sing 19 n n CAI CAJ 6K7 doub 20 n y N1 C2 6K7 doub 21 n y N1 C6 6K7 sing 22 n y C2 N3 6K7 sing 23 n y C6 C5 6K7 doub 24 n y NAE CAJ 6K7 sing 25 n y N3 C4 6K7 doub 26 n y C5 C4 6K7 sing 27 n y C4 NAR 6K7 sing 28 n n CAW NAR 6K7 sing 29 n n CAW CAX 6K7 sing 30 n n NAR CAS 6K7 sing 31 n n CAS CAT 6K7 sing 32 n n CAX OAY 6K7 sing 33 n n OAY CAT 6K7 sing 34 n n C5 H5 6K7 sing 35 n n CAC HAC 6K7 sing 36 n n NAA H5T 6K7 sing 37 n n NAA HAA 6K7 sing 38 n n CAJ HAJ 6K7 sing 39 n n CAZ HAZ2 6K7 sing 40 n n CAZ HAZ1 6K7 sing 41 n n CAV HAV1 6K7 sing 42 n n CAV HAV2 6K7 sing 43 n n CBD HBD1 6K7 sing 44 n n CBD HBD2 6K7 sing 45 n n CBB HBB2 6K7 sing 46 n n CBB HBB1 6K7 sing 47 n n OBC HBC 6K7 sing 48 n n CAS HAS2 6K7 sing 49 n n CAS HAS1 6K7 sing 50 n n CAT HAT2 6K7 sing 51 n n CAT HAT1 6K7 sing 52 n n CAX HAX1 6K7 sing 53 n n CAX HAX2 6K7 sing 54 n n CAW HAW1 6K7 sing 55 n n CAW HAW2 6K7 sing 56 n n # _atom_sites.entry_id 5JHA _atom_sites.fract_transf_matrix[1][1] 0.006918 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000649 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014697 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009411 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 6K7 A 1 1201 1 6K7 DRG . C 3 SO4 A 1 1202 1 SO4 SO4 . D 3 SO4 A 1 1203 1 SO4 SO4 . E 3 SO4 A 1 1204 2 SO4 SO4 . F 3 SO4 A 1 1205 4 SO4 SO4 . G 4 HOH A 1 1301 12 HOH HOH . G 4 HOH A 2 1302 14 HOH HOH . G 4 HOH A 3 1303 32 HOH HOH . G 4 HOH A 4 1304 34 HOH HOH . G 4 HOH A 5 1305 70 HOH HOH . G 4 HOH A 6 1306 66 HOH HOH . G 4 HOH A 7 1307 55 HOH HOH . G 4 HOH A 8 1308 54 HOH HOH . G 4 HOH A 9 1309 39 HOH HOH . G 4 HOH A 10 1310 16 HOH HOH . G 4 HOH A 11 1311 47 HOH HOH . G 4 HOH A 12 1312 18 HOH HOH . G 4 HOH A 13 1313 38 HOH HOH . G 4 HOH A 14 1314 40 HOH HOH . G 4 HOH A 15 1315 71 HOH HOH . G 4 HOH A 16 1316 73 HOH HOH . G 4 HOH A 17 1317 26 HOH HOH . G 4 HOH A 18 1318 36 HOH HOH . G 4 HOH A 19 1319 7 HOH HOH . G 4 HOH A 20 1320 15 HOH HOH . G 4 HOH A 21 1321 27 HOH HOH . G 4 HOH A 22 1322 75 HOH HOH . G 4 HOH A 23 1323 5 HOH HOH . G 4 HOH A 24 1324 59 HOH HOH . G 4 HOH A 25 1325 31 HOH HOH . G 4 HOH A 26 1326 22 HOH HOH . G 4 HOH A 27 1327 8 HOH HOH . G 4 HOH A 28 1328 53 HOH HOH . G 4 HOH A 29 1329 1 HOH HOH . G 4 HOH A 30 1330 17 HOH HOH . G 4 HOH A 31 1331 64 HOH HOH . G 4 HOH A 32 1332 63 HOH HOH . G 4 HOH A 33 1333 69 HOH HOH . G 4 HOH A 34 1334 3 HOH HOH . G 4 HOH A 35 1335 60 HOH HOH . G 4 HOH A 36 1336 9 HOH HOH . G 4 HOH A 37 1337 49 HOH HOH . G 4 HOH A 38 1338 46 HOH HOH . G 4 HOH A 39 1339 61 HOH HOH . G 4 HOH A 40 1340 65 HOH HOH . G 4 HOH A 41 1341 23 HOH HOH . G 4 HOH A 42 1342 13 HOH HOH . G 4 HOH A 43 1343 4 HOH HOH . G 4 HOH A 44 1344 10 HOH HOH . G 4 HOH A 45 1345 57 HOH HOH . G 4 HOH A 46 1346 6 HOH HOH . G 4 HOH A 47 1347 29 HOH HOH . G 4 HOH A 48 1348 68 HOH HOH . G 4 HOH A 49 1349 37 HOH HOH . G 4 HOH A 50 1350 19 HOH HOH . G 4 HOH A 51 1351 41 HOH HOH . G 4 HOH A 52 1352 58 HOH HOH . G 4 HOH A 53 1353 28 HOH HOH . G 4 HOH A 54 1354 25 HOH HOH . G 4 HOH A 55 1355 35 HOH HOH . G 4 HOH A 56 1356 72 HOH HOH . G 4 HOH A 57 1357 45 HOH HOH . G 4 HOH A 58 1358 67 HOH HOH . G 4 HOH A 59 1359 52 HOH HOH . G 4 HOH A 60 1360 62 HOH HOH . G 4 HOH A 61 1361 21 HOH HOH . G 4 HOH A 62 1362 74 HOH HOH . G 4 HOH A 63 1363 11 HOH HOH . G 4 HOH A 64 1364 2 HOH HOH . G 4 HOH A 65 1365 20 HOH HOH . G 4 HOH A 66 1366 56 HOH HOH . G 4 HOH A 67 1367 42 HOH HOH . G 4 HOH A 68 1368 50 HOH HOH . G 4 HOH A 69 1369 48 HOH HOH . G 4 HOH A 70 1370 43 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C4 6K7 . . . B 2 22.278 -3.469 22.195 1 84.1 ? C4 6K7 1201 A 1 HETATM 2 C C5 6K7 . . . B 2 23.546 -4.007 21.845 1 87.65 ? C5 6K7 1201 A 1 HETATM 3 C C6 6K7 . . . B 2 24.429 -3.202 21.082 1 86.55 ? C6 6K7 1201 A 1 HETATM 4 N N1 6K7 . . . B 2 24.024 -1.961 20.722 1 86.99 ? N1 6K7 1201 A 1 HETATM 5 N N3 6K7 . . . B 2 21.957 -2.212 21.785 1 89.45 ? N3 6K7 1201 A 1 HETATM 6 F FAB 6K7 . . . B 2 24.207 -3.484 18.27 1 81.71 ? FAB 6K7 1201 A 1 HETATM 7 C CAG 6K7 . . . B 2 25.498 -3.138 18.197 1 88.77 ? CAG 6K7 1201 A 1 HETATM 8 F FAF 6K7 . . . B 2 26.007 -3.616 17.059 1 91.5 ? FAF 6K7 1201 A 1 HETATM 9 F FAK 6K7 . . . B 2 25.611 -1.801 18.2 1 93.7 ? FAK 6K7 1201 A 1 HETATM 10 C CAH 6K7 . . . B 2 26.302 -3.698 19.34 1 88.45 ? CAH 6K7 1201 A 1 HETATM 11 C CAC 6K7 . . . B 2 27.601 -4.205 19.085 1 87.35 ? CAC 6K7 1201 A 1 HETATM 12 C CAD 6K7 . . . B 2 28.348 -4.717 20.139 1 84.28 ? CAD 6K7 1201 A 1 HETATM 13 N NAA 6K7 . . . B 2 29.66 -5.233 19.888 1 82.08 ? NAA 6K7 1201 A 1 HETATM 14 N NAE 6K7 . . . B 2 27.867 -4.733 21.37 1 77.62 ? NAE 6K7 1201 A 1 HETATM 15 C CAJ 6K7 . . . B 2 26.655 -4.266 21.658 1 81.37 ? CAJ 6K7 1201 A 1 HETATM 16 C CAI 6K7 . . . B 2 25.827 -3.73 20.677 1 85.24 ? CAI 6K7 1201 A 1 HETATM 17 C C2 6K7 . . . B 2 22.819 -1.499 21.072 1 91.55 ? C2 6K7 1201 A 1 HETATM 18 N NAU 6K7 . . . B 2 22.45 -0.148 20.641 1 99.19 ? NAU 6K7 1201 A 1 HETATM 19 C CAZ 6K7 . . . B 2 23.049 0.863 19.754 1 105.84 ? CAZ 6K7 1201 A 1 HETATM 20 C CAV 6K7 . . . B 2 21.405 0.825 20.986 1 104.38 ? CAV 6K7 1201 A 1 HETATM 21 C CBA 6K7 . . . B 2 21.818 1.652 19.844 1 111.1 ? CBA 6K7 1201 A 1 HETATM 22 C CBD 6K7 . . . B 2 20.94 1.489 18.595 1 111.88 ? CBD 6K7 1201 A 1 HETATM 23 CL CL 6K7 . . . B 2 19.242 1.732 18.924 1 155 ? CL 6K7 1201 A 1 HETATM 24 C CBB 6K7 . . . B 2 22.098 3.084 20.208 1 115.4 ? CBB 6K7 1201 A 1 HETATM 25 O OBC 6K7 . . . B 2 20.891 3.713 20.583 1 117.87 ? OBC 6K7 1201 A 1 HETATM 26 N NAR 6K7 . . . B 2 21.354 -4.254 22.971 1 75.03 ? NAR 6K7 1201 A 1 HETATM 27 C CAS 6K7 . . . B 2 21.811 -5.355 23.723 1 73.1 ? CAS 6K7 1201 A 1 HETATM 28 C CAT 6K7 . . . B 2 20.925 -5.69 24.904 1 68.01 ? CAT 6K7 1201 A 1 HETATM 29 O OAY 6K7 . . . B 2 19.546 -5.728 24.565 1 70.29 ? OAY 6K7 1201 A 1 HETATM 30 C CAX 6K7 . . . B 2 19.137 -4.525 23.925 1 73.05 ? CAX 6K7 1201 A 1 HETATM 31 C CAW 6K7 . . . B 2 19.972 -4.249 22.693 1 74.06 ? CAW 6K7 1201 A 1 HETATM 32 H H5 6K7 . . . B 2 23.805 -4.906 22.128 1 105.18 ? H5 6K7 1201 A 1 HETATM 33 H HAC 6K7 . . . B 2 27.965 -4.197 18.18 1 104.82 ? HAC 6K7 1201 A 1 HETATM 34 H H5T 6K7 . . . B 2 29.78 -5.901 19.271 1 98.49 ? H5T 6K7 1201 A 1 HETATM 35 H HAA 6K7 . . . B 2 30.38 -4.896 20.345 1 98.49 ? HAA 6K7 1201 A 1 HETATM 36 H HAJ 6K7 . . . B 2 26.34 -4.297 22.58 1 97.65 ? HAJ 6K7 1201 A 1 HETATM 37 H HAZ2 6K7 . . . B 2 23.218 0.525 18.852 1 127.01 ? HAZ2 6K7 1201 A 1 HETATM 38 H HAZ1 6K7 . . . B 2 23.82 1.314 20.158 1 127.01 ? HAZ1 6K7 1201 A 1 HETATM 39 H HAV1 6K7 . . . B 2 20.497 0.462 20.885 1 125.25 ? HAV1 6K7 1201 A 1 HETATM 40 H HAV2 6K7 . . . B 2 21.561 1.261 21.846 1 125.25 ? HAV2 6K7 1201 A 1 HETATM 41 H HBD1 6K7 . . . B 2 21.229 2.143 17.918 1 134.26 ? HBD1 6K7 1201 A 1 HETATM 42 H HBD2 6K7 . . . B 2 21.065 0.591 18.238 1 134.26 ? HBD2 6K7 1201 A 1 HETATM 43 H HBB2 6K7 . . . B 2 22.486 3.552 19.43 1 138.48 ? HBB2 6K7 1201 A 1 HETATM 44 H HBB1 6K7 . . . B 2 22.729 3.115 20.956 1 138.48 ? HBB1 6K7 1201 A 1 HETATM 45 H HBC 6K7 . . . B 2 20.29 3.615 19.931 1 141.44 ? HBC 6K7 1201 A 1 HETATM 46 H HAS2 6K7 . . . B 2 21.858 -6.134 23.137 1 87.72 ? HAS2 6K7 1201 A 1 HETATM 47 H HAS1 6K7 . . . B 2 22.709 -5.157 24.052 1 87.72 ? HAS1 6K7 1201 A 1 HETATM 48 H HAT2 6K7 . . . B 2 21.188 -6.567 25.257 1 81.61 ? HAT2 6K7 1201 A 1 HETATM 49 H HAT1 6K7 . . . B 2 21.061 -5.016 25.601 1 81.61 ? HAT1 6K7 1201 A 1 HETATM 50 H HAX1 6K7 . . . B 2 18.193 -4.604 23.663 1 87.67 ? HAX1 6K7 1201 A 1 HETATM 51 H HAX2 6K7 . . . B 2 19.234 -3.779 24.552 1 87.67 ? HAX2 6K7 1201 A 1 HETATM 52 H HAW1 6K7 . . . B 2 19.781 -4.933 22.023 1 88.87 ? HAW1 6K7 1201 A 1 HETATM 53 H HAW2 6K7 . . . B 2 19.724 -3.374 22.332 1 88.87 ? HAW2 6K7 1201 A 1 # _model_server_stats.io_time_ms 81 _model_server_stats.parse_time_ms 21 _model_server_stats.create_model_time_ms 19 _model_server_stats.query_time_ms 399 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 53 #