data_5JHG # _model_server_result.job_id P6kTNz9zBWckQ_u3V51tXg _model_server_result.datetime_utc '2024-10-11 06:24:25' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5jhg # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":1102}' # _entry.id 5JHG # _exptl.entry_id 5JHG _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 113 _cell.angle_gamma 90 _cell.entry_id 5JHG _cell.length_a 87.44 _cell.length_b 118.589 _cell.length_c 88.003 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5JHG _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,F,G,I,J 1 1 C,D,H,K,L 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 F N N ? 3 G N N ? 3 H N N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 5JHG _atom_sites.fract_transf_matrix[1][1] 0.011436 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004854 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008432 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012344 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 GOL A 1 1101 3 GOL GOL . F 3 GOL A 1 1102 4 GOL GOL . G 3 GOL B 1 201 2 GOL GOL . H 3 GOL E 1 1101 1 GOL GOL . I 4 HOH A 1 1201 50 HOH HOH . I 4 HOH A 2 1202 60 HOH HOH . I 4 HOH A 3 1203 75 HOH HOH . I 4 HOH A 4 1204 96 HOH HOH . I 4 HOH A 5 1205 44 HOH HOH . I 4 HOH A 6 1206 8 HOH HOH . I 4 HOH A 7 1207 32 HOH HOH . I 4 HOH A 8 1208 41 HOH HOH . I 4 HOH A 9 1209 19 HOH HOH . I 4 HOH A 10 1210 42 HOH HOH . I 4 HOH A 11 1211 20 HOH HOH . I 4 HOH A 12 1212 95 HOH HOH . I 4 HOH A 13 1213 67 HOH HOH . I 4 HOH A 14 1214 10 HOH HOH . I 4 HOH A 15 1215 40 HOH HOH . I 4 HOH A 16 1216 81 HOH HOH . I 4 HOH A 17 1217 66 HOH HOH . I 4 HOH A 18 1218 26 HOH HOH . I 4 HOH A 19 1219 35 HOH HOH . I 4 HOH A 20 1220 1 HOH HOH . I 4 HOH A 21 1221 85 HOH HOH . I 4 HOH A 22 1222 21 HOH HOH . I 4 HOH A 23 1223 82 HOH HOH . I 4 HOH A 24 1224 97 HOH HOH . I 4 HOH A 25 1225 7 HOH HOH . I 4 HOH A 26 1226 68 HOH HOH . I 4 HOH A 27 1227 86 HOH HOH . I 4 HOH A 28 1228 87 HOH HOH . I 4 HOH A 29 1229 65 HOH HOH . I 4 HOH A 30 1230 99 HOH HOH . I 4 HOH A 31 1231 80 HOH HOH . I 4 HOH A 32 1232 84 HOH HOH . I 4 HOH A 33 1233 59 HOH HOH . I 4 HOH A 34 1234 76 HOH HOH . I 4 HOH A 35 1235 64 HOH HOH . I 4 HOH A 36 1236 70 HOH HOH . I 4 HOH A 37 1237 83 HOH HOH . I 4 HOH A 38 1238 57 HOH HOH . I 4 HOH A 39 1239 61 HOH HOH . I 4 HOH A 40 1240 62 HOH HOH . I 4 HOH A 41 1241 69 HOH HOH . J 4 HOH B 1 301 15 HOH HOH . J 4 HOH B 2 302 56 HOH HOH . J 4 HOH B 3 303 79 HOH HOH . J 4 HOH B 4 304 29 HOH HOH . J 4 HOH B 5 305 90 HOH HOH . J 4 HOH B 6 306 30 HOH HOH . J 4 HOH B 7 307 72 HOH HOH . J 4 HOH B 8 308 71 HOH HOH . J 4 HOH B 9 309 6 HOH HOH . J 4 HOH B 10 310 16 HOH HOH . J 4 HOH B 11 311 3 HOH HOH . J 4 HOH B 12 312 17 HOH HOH . J 4 HOH B 13 313 49 HOH HOH . J 4 HOH B 14 314 52 HOH HOH . J 4 HOH B 15 315 45 HOH HOH . J 4 HOH B 16 316 73 HOH HOH . J 4 HOH B 17 317 22 HOH HOH . J 4 HOH B 18 318 89 HOH HOH . J 4 HOH B 19 319 98 HOH HOH . J 4 HOH B 20 320 88 HOH HOH . J 4 HOH B 21 321 53 HOH HOH . J 4 HOH B 22 322 74 HOH HOH . J 4 HOH B 23 323 91 HOH HOH . K 4 HOH E 1 1201 39 HOH HOH . K 4 HOH E 2 1202 12 HOH HOH . K 4 HOH E 3 1203 36 HOH HOH . K 4 HOH E 4 1204 23 HOH HOH . K 4 HOH E 5 1205 25 HOH HOH . K 4 HOH E 6 1206 47 HOH HOH . K 4 HOH E 7 1207 27 HOH HOH . K 4 HOH E 8 1208 43 HOH HOH . K 4 HOH E 9 1209 38 HOH HOH . K 4 HOH E 10 1210 94 HOH HOH . K 4 HOH E 11 1211 33 HOH HOH . K 4 HOH E 12 1212 18 HOH HOH . K 4 HOH E 13 1213 93 HOH HOH . K 4 HOH E 14 1214 46 HOH HOH . K 4 HOH E 15 1215 77 HOH HOH . K 4 HOH E 16 1216 51 HOH HOH . K 4 HOH E 17 1217 37 HOH HOH . K 4 HOH E 18 1218 14 HOH HOH . K 4 HOH E 19 1219 13 HOH HOH . K 4 HOH E 20 1220 31 HOH HOH . K 4 HOH E 21 1221 5 HOH HOH . K 4 HOH E 22 1222 63 HOH HOH . K 4 HOH E 23 1223 48 HOH HOH . K 4 HOH E 24 1224 54 HOH HOH . K 4 HOH E 25 1225 78 HOH HOH . K 4 HOH E 26 1226 92 HOH HOH . L 4 HOH F 1 201 4 HOH HOH . L 4 HOH F 2 202 58 HOH HOH . L 4 HOH F 3 203 9 HOH HOH . L 4 HOH F 4 204 24 HOH HOH . L 4 HOH F 5 205 34 HOH HOH . L 4 HOH F 6 206 11 HOH HOH . L 4 HOH F 7 207 28 HOH HOH . L 4 HOH F 8 208 55 HOH HOH . L 4 HOH F 9 209 2 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . F 3 -18.904 31.41 20.29 1 32.15 ? C1 GOL 1102 A 1 HETATM 2 O O1 GOL . . . F 3 -18.258 32.278 19.301 1 35.82 ? O1 GOL 1102 A 1 HETATM 3 C C2 GOL . . . F 3 -18.022 30.246 20.512 1 29.96 ? C2 GOL 1102 A 1 HETATM 4 O O2 GOL . . . F 3 -17.131 29.98 19.398 1 34.64 ? O2 GOL 1102 A 1 HETATM 5 C C3 GOL . . . F 3 -17.032 30.522 21.644 1 31.04 ? C3 GOL 1102 A 1 HETATM 6 O O3 GOL . . . F 3 -16.607 29.119 21.97 1 34.3 ? O3 GOL 1102 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 303 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 6 #