data_5JHK # _model_server_result.job_id '_Rq6VDaqH2T4YvkmiaBr2g' _model_server_result.datetime_utc '2024-10-22 03:21:38' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5jhk # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":501}' # _entry.id 5JHK # _exptl.entry_id 5JHK _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 335.358 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-(benzenecarbonyl)glycyl-L-arginine _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 98.27 _cell.angle_gamma 90 _cell.entry_id 5JHK _cell.length_a 40.376 _cell.length_b 90.781 _cell.length_c 40.965 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5JHK _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D 1 1 B,E 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 6 A CYS 275 1_555 A SG CYS 155 A CYS 424 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf2 B SG CYS 6 B CYS 275 1_555 B SG CYS 155 B CYS 424 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.08 ? # _chem_comp.formula 'C15 H21 N5 O4' _chem_comp.formula_weight 335.358 _chem_comp.id 6K8 _chem_comp.mon_nstd_flag . _chem_comp.name N-(benzenecarbonyl)glycyl-L-arginine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O3 C6 6K8 doub 1 n n C14 C13 6K8 doub 2 n y C14 C9 6K8 sing 3 n y N4 C7 6K8 sing 4 n n N4 C8 6K8 sing 5 n n C13 C12 6K8 sing 6 n y C7 C6 6K8 sing 7 n n C6 N3 6K8 sing 8 n n C8 C9 6K8 sing 9 n n C8 O2 6K8 doub 10 n n C9 C10 6K8 doub 11 n y C12 C11 6K8 doub 12 n y N3 C4 6K8 sing 13 n n N C 6K8 doub 14 n n C10 C11 6K8 sing 15 n y C1 C2 6K8 sing 16 n n C1 N2 6K8 sing 17 n n C4 C5 6K8 sing 18 n n C4 C3 6K8 sing 19 n n O1 C5 6K8 doub 20 n n C N2 6K8 sing 21 n n C N1 6K8 sing 22 n n C5 O 6K8 sing 23 n n C2 C3 6K8 sing 24 n n N1 H1 6K8 sing 25 n n N1 H2 6K8 sing 26 n n C2 H3 6K8 sing 27 n n C2 H4 6K8 sing 28 n n N3 H5 6K8 sing 29 n n C4 H6 6K8 sing 30 n n O H7 6K8 sing 31 n n C3 H8 6K8 sing 32 n n C3 H9 6K8 sing 33 n n C1 H10 6K8 sing 34 n n C1 H11 6K8 sing 35 n n N2 H12 6K8 sing 36 n n N H13 6K8 sing 37 n n C7 H15 6K8 sing 38 n n C7 H16 6K8 sing 39 n n N4 H17 6K8 sing 40 n n C14 H18 6K8 sing 41 n n C13 H19 6K8 sing 42 n n C12 H20 6K8 sing 43 n n C11 H21 6K8 sing 44 n n C10 H22 6K8 sing 45 n n # _atom_sites.entry_id 5JHK _atom_sites.fract_transf_matrix[1][1] 0.024767 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003599 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011016 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.024668 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 6K8 A 1 501 1 6K8 AR6 . D 3 HOH A 1 601 82 HOH HOH . D 3 HOH A 2 602 117 HOH HOH . D 3 HOH A 3 603 85 HOH HOH . D 3 HOH A 4 604 92 HOH HOH . D 3 HOH A 5 605 121 HOH HOH . D 3 HOH A 6 606 6 HOH HOH . D 3 HOH A 7 607 78 HOH HOH . D 3 HOH A 8 608 113 HOH HOH . D 3 HOH A 9 609 103 HOH HOH . D 3 HOH A 10 610 189 HOH HOH . D 3 HOH A 11 611 38 HOH HOH . D 3 HOH A 12 612 129 HOH HOH . D 3 HOH A 13 613 178 HOH HOH . D 3 HOH A 14 614 146 HOH HOH . D 3 HOH A 15 615 70 HOH HOH . D 3 HOH A 16 616 106 HOH HOH . D 3 HOH A 17 617 173 HOH HOH . D 3 HOH A 18 618 171 HOH HOH . D 3 HOH A 19 619 8 HOH HOH . D 3 HOH A 20 620 2 HOH HOH . D 3 HOH A 21 621 184 HOH HOH . D 3 HOH A 22 622 81 HOH HOH . D 3 HOH A 23 623 80 HOH HOH . D 3 HOH A 24 624 51 HOH HOH . D 3 HOH A 25 625 23 HOH HOH . D 3 HOH A 26 626 158 HOH HOH . D 3 HOH A 27 627 77 HOH HOH . D 3 HOH A 28 628 194 HOH HOH . D 3 HOH A 29 629 91 HOH HOH . D 3 HOH A 30 630 137 HOH HOH . D 3 HOH A 31 631 159 HOH HOH . D 3 HOH A 32 632 13 HOH HOH . D 3 HOH A 33 633 79 HOH HOH . D 3 HOH A 34 634 110 HOH HOH . D 3 HOH A 35 635 125 HOH HOH . D 3 HOH A 36 636 132 HOH HOH . D 3 HOH A 37 637 87 HOH HOH . D 3 HOH A 38 638 154 HOH HOH . D 3 HOH A 39 639 166 HOH HOH . D 3 HOH A 40 640 65 HOH HOH . D 3 HOH A 41 641 163 HOH HOH . D 3 HOH A 42 642 102 HOH HOH . D 3 HOH A 43 643 83 HOH HOH . D 3 HOH A 44 644 104 HOH HOH . D 3 HOH A 45 645 29 HOH HOH . D 3 HOH A 46 646 98 HOH HOH . D 3 HOH A 47 647 181 HOH HOH . D 3 HOH A 48 648 111 HOH HOH . D 3 HOH A 49 649 93 HOH HOH . D 3 HOH A 50 650 130 HOH HOH . D 3 HOH A 51 651 107 HOH HOH . D 3 HOH A 52 652 127 HOH HOH . D 3 HOH A 53 653 170 HOH HOH . D 3 HOH A 54 654 26 HOH HOH . D 3 HOH A 55 655 46 HOH HOH . D 3 HOH A 56 656 52 HOH HOH . D 3 HOH A 57 657 72 HOH HOH . D 3 HOH A 58 658 64 HOH HOH . D 3 HOH A 59 659 60 HOH HOH . D 3 HOH A 60 660 97 HOH HOH . D 3 HOH A 61 661 94 HOH HOH . D 3 HOH A 62 662 57 HOH HOH . D 3 HOH A 63 663 12 HOH HOH . D 3 HOH A 64 664 116 HOH HOH . D 3 HOH A 65 665 101 HOH HOH . D 3 HOH A 66 666 96 HOH HOH . D 3 HOH A 67 667 119 HOH HOH . D 3 HOH A 68 668 63 HOH HOH . D 3 HOH A 69 669 73 HOH HOH . D 3 HOH A 70 670 47 HOH HOH . D 3 HOH A 71 671 168 HOH HOH . D 3 HOH A 72 672 128 HOH HOH . D 3 HOH A 73 673 54 HOH HOH . D 3 HOH A 74 674 149 HOH HOH . D 3 HOH A 75 675 114 HOH HOH . D 3 HOH A 76 676 161 HOH HOH . D 3 HOH A 77 677 35 HOH HOH . D 3 HOH A 78 678 150 HOH HOH . D 3 HOH A 79 679 58 HOH HOH . D 3 HOH A 80 680 156 HOH HOH . D 3 HOH A 81 681 55 HOH HOH . D 3 HOH A 82 682 175 HOH HOH . D 3 HOH A 83 683 27 HOH HOH . D 3 HOH A 84 684 109 HOH HOH . D 3 HOH A 85 685 188 HOH HOH . D 3 HOH A 86 686 142 HOH HOH . D 3 HOH A 87 687 185 HOH HOH . D 3 HOH A 88 688 180 HOH HOH . D 3 HOH A 89 689 21 HOH HOH . D 3 HOH A 90 690 122 HOH HOH . D 3 HOH A 91 691 124 HOH HOH . D 3 HOH A 92 692 190 HOH HOH . D 3 HOH A 93 693 141 HOH HOH . E 3 HOH B 1 501 196 HOH HOH . E 3 HOH B 2 502 49 HOH HOH . E 3 HOH B 3 503 138 HOH HOH . E 3 HOH B 4 504 179 HOH HOH . E 3 HOH B 5 505 22 HOH HOH . E 3 HOH B 6 506 147 HOH HOH . E 3 HOH B 7 507 135 HOH HOH . E 3 HOH B 8 508 120 HOH HOH . E 3 HOH B 9 509 174 HOH HOH . E 3 HOH B 10 510 1 HOH HOH . E 3 HOH B 11 511 59 HOH HOH . E 3 HOH B 12 512 75 HOH HOH . E 3 HOH B 13 513 43 HOH HOH . E 3 HOH B 14 514 15 HOH HOH . E 3 HOH B 15 515 153 HOH HOH . E 3 HOH B 16 516 62 HOH HOH . E 3 HOH B 17 517 11 HOH HOH . E 3 HOH B 18 518 99 HOH HOH . E 3 HOH B 19 519 9 HOH HOH . E 3 HOH B 20 520 17 HOH HOH . E 3 HOH B 21 521 67 HOH HOH . E 3 HOH B 22 522 61 HOH HOH . E 3 HOH B 23 523 84 HOH HOH . E 3 HOH B 24 524 136 HOH HOH . E 3 HOH B 25 525 4 HOH HOH . E 3 HOH B 26 526 31 HOH HOH . E 3 HOH B 27 527 66 HOH HOH . E 3 HOH B 28 528 7 HOH HOH . E 3 HOH B 29 529 5 HOH HOH . E 3 HOH B 30 530 30 HOH HOH . E 3 HOH B 31 531 16 HOH HOH . E 3 HOH B 32 532 40 HOH HOH . E 3 HOH B 33 533 76 HOH HOH . E 3 HOH B 34 534 88 HOH HOH . E 3 HOH B 35 535 157 HOH HOH . E 3 HOH B 36 536 105 HOH HOH . E 3 HOH B 37 537 152 HOH HOH . E 3 HOH B 38 538 162 HOH HOH . E 3 HOH B 39 539 140 HOH HOH . E 3 HOH B 40 540 34 HOH HOH . E 3 HOH B 41 541 151 HOH HOH . E 3 HOH B 42 542 155 HOH HOH . E 3 HOH B 43 543 74 HOH HOH . E 3 HOH B 44 544 33 HOH HOH . E 3 HOH B 45 545 118 HOH HOH . E 3 HOH B 46 546 89 HOH HOH . E 3 HOH B 47 547 164 HOH HOH . E 3 HOH B 48 548 18 HOH HOH . E 3 HOH B 49 549 45 HOH HOH . E 3 HOH B 50 550 24 HOH HOH . E 3 HOH B 51 551 95 HOH HOH . E 3 HOH B 52 552 86 HOH HOH . E 3 HOH B 53 553 123 HOH HOH . E 3 HOH B 54 554 198 HOH HOH . E 3 HOH B 55 555 71 HOH HOH . E 3 HOH B 56 556 41 HOH HOH . E 3 HOH B 57 557 206 HOH HOH . E 3 HOH B 58 558 36 HOH HOH . E 3 HOH B 59 559 44 HOH HOH . E 3 HOH B 60 560 42 HOH HOH . E 3 HOH B 61 561 167 HOH HOH . E 3 HOH B 62 562 48 HOH HOH . E 3 HOH B 63 563 169 HOH HOH . E 3 HOH B 64 564 28 HOH HOH . E 3 HOH B 65 565 112 HOH HOH . E 3 HOH B 66 566 172 HOH HOH . E 3 HOH B 67 567 134 HOH HOH . E 3 HOH B 68 568 68 HOH HOH . E 3 HOH B 69 569 126 HOH HOH . E 3 HOH B 70 570 14 HOH HOH . E 3 HOH B 71 571 177 HOH HOH . E 3 HOH B 72 572 19 HOH HOH . E 3 HOH B 73 573 176 HOH HOH . E 3 HOH B 74 574 100 HOH HOH . E 3 HOH B 75 575 160 HOH HOH . E 3 HOH B 76 576 25 HOH HOH . E 3 HOH B 77 577 133 HOH HOH . E 3 HOH B 78 578 148 HOH HOH . E 3 HOH B 79 579 186 HOH HOH . E 3 HOH B 80 580 108 HOH HOH . E 3 HOH B 81 581 131 HOH HOH . E 3 HOH B 82 582 32 HOH HOH . E 3 HOH B 83 583 192 HOH HOH . E 3 HOH B 84 584 37 HOH HOH . E 3 HOH B 85 585 50 HOH HOH . E 3 HOH B 86 586 3 HOH HOH . E 3 HOH B 87 587 204 HOH HOH . E 3 HOH B 88 588 139 HOH HOH . E 3 HOH B 89 589 205 HOH HOH . E 3 HOH B 90 590 183 HOH HOH . E 3 HOH B 91 591 187 HOH HOH . E 3 HOH B 92 592 195 HOH HOH . E 3 HOH B 93 593 197 HOH HOH . E 3 HOH B 94 594 53 HOH HOH . E 3 HOH B 95 595 145 HOH HOH . E 3 HOH B 96 596 69 HOH HOH . E 3 HOH B 97 597 144 HOH HOH . E 3 HOH B 98 598 56 HOH HOH . E 3 HOH B 99 599 203 HOH HOH . E 3 HOH B 100 600 182 HOH HOH . E 3 HOH B 101 601 200 HOH HOH . E 3 HOH B 102 602 202 HOH HOH . E 3 HOH B 103 603 90 HOH HOH . E 3 HOH B 104 604 115 HOH HOH . E 3 HOH B 105 605 39 HOH HOH . E 3 HOH B 106 606 201 HOH HOH . E 3 HOH B 107 607 10 HOH HOH . E 3 HOH B 108 608 191 HOH HOH . E 3 HOH B 109 609 20 HOH HOH . E 3 HOH B 110 610 165 HOH HOH . E 3 HOH B 111 611 143 HOH HOH . E 3 HOH B 112 612 193 HOH HOH . E 3 HOH B 113 613 199 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 6K8 . . . C 2 31.472 -16.367 28.846 1 29.1 ? N1 6K8 501 A 1 HETATM 2 C C2 6K8 . . . C 2 31.26 -11.814 28.053 1 30.36 ? C2 6K8 501 A 1 HETATM 3 N N3 6K8 . . . C 2 29.511 -9.762 26.564 1 37.51 ? N3 6K8 501 A 1 HETATM 4 C C4 6K8 . . . C 2 28.978 -10.809 27.416 1 31.45 ? C4 6K8 501 A 1 HETATM 5 C C5 6K8 . . . C 2 27.621 -10.43 27.98 1 27.1 ? C5 6K8 501 A 1 HETATM 6 C C6 6K8 . . . C 2 29.651 -9.954 25.239 1 46.36 ? C6 6K8 501 A 1 HETATM 7 C C8 6K8 . . . C 2 30.025 -6.768 25.793 1 49.5 ? C8 6K8 501 A 1 HETATM 8 O O3 6K8 . . . C 2 29.37 -11.007 24.664 1 43.5 ? O3 6K8 501 A 1 HETATM 9 O O1 6K8 . . . C 2 26.696 -11.184 27.93 1 25.76 ? O1 6K8 501 A 1 HETATM 10 O O 6K8 . . . C 2 27.61 -9.261 28.558 1 26.41 ? O 6K8 501 A 1 HETATM 11 C C3 6K8 . . . C 2 29.968 -11.215 28.535 1 29.71 ? C3 6K8 501 A 1 HETATM 12 C C1 6K8 . . . C 2 31.048 -13.082 27.272 1 30.34 ? C1 6K8 501 A 1 HETATM 13 N N2 6K8 . . . C 2 30.948 -14.243 28.149 1 28.75 ? N2 6K8 501 A 1 HETATM 14 C C 6K8 . . . C 2 31.64 -15.379 27.971 1 29.85 ? C 6K8 501 A 1 HETATM 15 N N 6K8 . . . C 2 32.447 -15.499 26.941 1 30.35 ? N 6K8 501 A 1 HETATM 16 C C7 6K8 . . . C 2 30.236 -8.798 24.447 1 50.41 ? C7 6K8 501 A 1 HETATM 17 N N4 6K8 . . . C 2 29.712 -7.465 24.688 1 51.42 ? N4 6K8 501 A 1 HETATM 18 O O2 6K8 . . . C 2 30.697 -7.261 26.705 1 53.7 ? O2 6K8 501 A 1 HETATM 19 C C9 6K8 . . . C 2 29.548 -5.344 25.911 1 45.67 ? C9 6K8 501 A 1 HETATM 20 C C14 6K8 . . . C 2 29.438 -4.527 24.791 1 45.2 ? C14 6K8 501 A 1 HETATM 21 C C13 6K8 . . . C 2 29.055 -3.206 24.929 1 41.94 ? C13 6K8 501 A 1 HETATM 22 C C12 6K8 . . . C 2 28.816 -2.68 26.177 1 42.5 ? C12 6K8 501 A 1 HETATM 23 C C11 6K8 . . . C 2 28.964 -3.467 27.293 1 43.37 ? C11 6K8 501 A 1 HETATM 24 C C10 6K8 . . . C 2 29.344 -4.791 27.167 1 43.49 ? C10 6K8 501 A 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 17 _model_server_stats.query_time_ms 308 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 24 #