data_5JI0 # _model_server_result.job_id EGbCP-WTc20cdpyL86kLOg _model_server_result.datetime_utc '2024-11-04 20:52:19' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5ji0 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":501}' # _entry.id 5JI0 # _exptl.entry_id 5JI0 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 300.435 _entity.id 4 _entity.src_method man _entity.type non-polymer _entity.pdbx_description '(9cis)-retinoic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5JI0 _cell.length_a 53.88 _cell.length_b 66.527 _cell.length_c 165.927 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5JI0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? tetrameric 4 author_defined_assembly 1 PISA dimeric 2 software_defined_assembly 2 PISA dimeric 2 software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I 1 1 A,D,E,G 2 1 B,C,F,H,I 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id B _struct_conn.ptnr1_label_atom_id C _struct_conn.ptnr1_label_comp_id GLY _struct_conn.ptnr1_label_seq_id 35 _struct_conn.ptnr1_auth_asym_id D _struct_conn.ptnr1_auth_comp_id GLY _struct_conn.ptnr1_auth_seq_id 239 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id CD _struct_conn.ptnr2_label_comp_id GLN _struct_conn.ptnr2_label_seq_id 69 _struct_conn.ptnr2_auth_asym_id D _struct_conn.ptnr2_auth_comp_id GLN _struct_conn.ptnr2_auth_seq_id 273 _struct_conn.ptnr2_symmetry 4_447 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.621 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C20 H28 O2' _chem_comp.formula_weight 300.435 _chem_comp.id 9CR _chem_comp.mon_nstd_flag . _chem_comp.name '(9cis)-retinoic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5JI0 _atom_sites.fract_transf_matrix[1][1] 0.01856 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015031 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006027 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 4 9CR A 1 501 2 9CR CRA . F 5 BRL D 1 501 1 BRL DRG . G 6 HOH A 1 601 106 HOH HOH . G 6 HOH A 2 602 202 HOH HOH . G 6 HOH A 3 603 40 HOH HOH . G 6 HOH A 4 604 68 HOH HOH . G 6 HOH A 5 605 201 HOH HOH . G 6 HOH A 6 606 175 HOH HOH . G 6 HOH A 7 607 20 HOH HOH . G 6 HOH A 8 608 227 HOH HOH . G 6 HOH A 9 609 130 HOH HOH . G 6 HOH A 10 610 196 HOH HOH . G 6 HOH A 11 611 50 HOH HOH . G 6 HOH A 12 612 223 HOH HOH . G 6 HOH A 13 613 109 HOH HOH . G 6 HOH A 14 614 150 HOH HOH . G 6 HOH A 15 615 166 HOH HOH . G 6 HOH A 16 616 124 HOH HOH . G 6 HOH A 17 617 199 HOH HOH . G 6 HOH A 18 618 85 HOH HOH . G 6 HOH A 19 619 23 HOH HOH . G 6 HOH A 20 620 231 HOH HOH . G 6 HOH A 21 621 67 HOH HOH . G 6 HOH A 22 622 74 HOH HOH . G 6 HOH A 23 623 9 HOH HOH . G 6 HOH A 24 624 73 HOH HOH . G 6 HOH A 25 625 192 HOH HOH . G 6 HOH A 26 626 129 HOH HOH . G 6 HOH A 27 627 114 HOH HOH . G 6 HOH A 28 628 58 HOH HOH . G 6 HOH A 29 629 178 HOH HOH . G 6 HOH A 30 630 88 HOH HOH . G 6 HOH A 31 631 116 HOH HOH . G 6 HOH A 32 632 165 HOH HOH . G 6 HOH A 33 633 214 HOH HOH . G 6 HOH A 34 634 164 HOH HOH . G 6 HOH A 35 635 101 HOH HOH . G 6 HOH A 36 636 84 HOH HOH . G 6 HOH A 37 637 209 HOH HOH . G 6 HOH A 38 638 198 HOH HOH . G 6 HOH A 39 639 34 HOH HOH . G 6 HOH A 40 640 195 HOH HOH . G 6 HOH A 41 641 194 HOH HOH . G 6 HOH A 42 642 183 HOH HOH . G 6 HOH A 43 643 189 HOH HOH . G 6 HOH A 44 644 200 HOH HOH . G 6 HOH A 45 645 212 HOH HOH . G 6 HOH A 46 646 134 HOH HOH . G 6 HOH A 47 647 213 HOH HOH . G 6 HOH A 48 648 216 HOH HOH . H 6 HOH D 1 601 152 HOH HOH . H 6 HOH D 2 602 205 HOH HOH . H 6 HOH D 3 603 139 HOH HOH . H 6 HOH D 4 604 184 HOH HOH . H 6 HOH D 5 605 230 HOH HOH . H 6 HOH D 6 606 19 HOH HOH . H 6 HOH D 7 607 151 HOH HOH . H 6 HOH D 8 608 72 HOH HOH . H 6 HOH D 9 609 187 HOH HOH . H 6 HOH D 10 610 188 HOH HOH . H 6 HOH D 11 611 182 HOH HOH . H 6 HOH D 12 612 171 HOH HOH . H 6 HOH D 13 613 113 HOH HOH . H 6 HOH D 14 614 30 HOH HOH . H 6 HOH D 15 615 153 HOH HOH . H 6 HOH D 16 616 221 HOH HOH . H 6 HOH D 17 617 127 HOH HOH . H 6 HOH D 18 618 95 HOH HOH . H 6 HOH D 19 619 81 HOH HOH . H 6 HOH D 20 620 117 HOH HOH . H 6 HOH D 21 621 41 HOH HOH . H 6 HOH D 22 622 120 HOH HOH . H 6 HOH D 23 623 5 HOH HOH . H 6 HOH D 24 624 77 HOH HOH . H 6 HOH D 25 625 64 HOH HOH . H 6 HOH D 26 626 222 HOH HOH . H 6 HOH D 27 627 191 HOH HOH . H 6 HOH D 28 628 228 HOH HOH . H 6 HOH D 29 629 104 HOH HOH . H 6 HOH D 30 630 12 HOH HOH . H 6 HOH D 31 631 42 HOH HOH . H 6 HOH D 32 632 28 HOH HOH . H 6 HOH D 33 633 62 HOH HOH . H 6 HOH D 34 634 13 HOH HOH . H 6 HOH D 35 635 110 HOH HOH . H 6 HOH D 36 636 161 HOH HOH . H 6 HOH D 37 637 29 HOH HOH . H 6 HOH D 38 638 2 HOH HOH . H 6 HOH D 39 639 128 HOH HOH . H 6 HOH D 40 640 25 HOH HOH . H 6 HOH D 41 641 10 HOH HOH . H 6 HOH D 42 642 16 HOH HOH . H 6 HOH D 43 643 107 HOH HOH . H 6 HOH D 44 644 44 HOH HOH . H 6 HOH D 45 645 168 HOH HOH . H 6 HOH D 46 646 126 HOH HOH . H 6 HOH D 47 647 138 HOH HOH . H 6 HOH D 48 648 22 HOH HOH . H 6 HOH D 49 649 51 HOH HOH . H 6 HOH D 50 650 97 HOH HOH . H 6 HOH D 51 651 103 HOH HOH . H 6 HOH D 52 652 38 HOH HOH . H 6 HOH D 53 653 56 HOH HOH . H 6 HOH D 54 654 32 HOH HOH . H 6 HOH D 55 655 224 HOH HOH . H 6 HOH D 56 656 123 HOH HOH . H 6 HOH D 57 657 158 HOH HOH . H 6 HOH D 58 658 87 HOH HOH . H 6 HOH D 59 659 229 HOH HOH . H 6 HOH D 60 660 37 HOH HOH . H 6 HOH D 61 661 147 HOH HOH . H 6 HOH D 62 662 14 HOH HOH . H 6 HOH D 63 663 82 HOH HOH . H 6 HOH D 64 664 1 HOH HOH . H 6 HOH D 65 665 8 HOH HOH . H 6 HOH D 66 666 215 HOH HOH . H 6 HOH D 67 667 174 HOH HOH . H 6 HOH D 68 668 61 HOH HOH . H 6 HOH D 69 669 45 HOH HOH . H 6 HOH D 70 670 47 HOH HOH . H 6 HOH D 71 671 93 HOH HOH . H 6 HOH D 72 672 211 HOH HOH . H 6 HOH D 73 673 7 HOH HOH . H 6 HOH D 74 674 193 HOH HOH . H 6 HOH D 75 675 172 HOH HOH . H 6 HOH D 76 676 17 HOH HOH . H 6 HOH D 77 677 115 HOH HOH . H 6 HOH D 78 678 31 HOH HOH . H 6 HOH D 79 679 46 HOH HOH . H 6 HOH D 80 680 206 HOH HOH . H 6 HOH D 81 681 197 HOH HOH . H 6 HOH D 82 682 59 HOH HOH . H 6 HOH D 83 683 170 HOH HOH . H 6 HOH D 84 684 148 HOH HOH . H 6 HOH D 85 685 6 HOH HOH . H 6 HOH D 86 686 26 HOH HOH . H 6 HOH D 87 687 121 HOH HOH . H 6 HOH D 88 688 105 HOH HOH . H 6 HOH D 89 689 144 HOH HOH . H 6 HOH D 90 690 36 HOH HOH . H 6 HOH D 91 691 49 HOH HOH . H 6 HOH D 92 692 102 HOH HOH . H 6 HOH D 93 693 146 HOH HOH . H 6 HOH D 94 694 163 HOH HOH . H 6 HOH D 95 695 35 HOH HOH . H 6 HOH D 96 696 57 HOH HOH . H 6 HOH D 97 697 80 HOH HOH . H 6 HOH D 98 698 119 HOH HOH . H 6 HOH D 99 699 111 HOH HOH . H 6 HOH D 100 700 122 HOH HOH . H 6 HOH D 101 701 27 HOH HOH . H 6 HOH D 102 702 90 HOH HOH . H 6 HOH D 103 703 140 HOH HOH . H 6 HOH D 104 704 21 HOH HOH . H 6 HOH D 105 705 169 HOH HOH . H 6 HOH D 106 706 24 HOH HOH . H 6 HOH D 107 707 149 HOH HOH . H 6 HOH D 108 708 190 HOH HOH . H 6 HOH D 109 709 71 HOH HOH . H 6 HOH D 110 710 186 HOH HOH . H 6 HOH D 111 711 3 HOH HOH . H 6 HOH D 112 712 176 HOH HOH . H 6 HOH D 113 713 177 HOH HOH . H 6 HOH D 114 714 94 HOH HOH . H 6 HOH D 115 715 63 HOH HOH . H 6 HOH D 116 716 11 HOH HOH . H 6 HOH D 117 717 76 HOH HOH . H 6 HOH D 118 718 70 HOH HOH . H 6 HOH D 119 719 155 HOH HOH . H 6 HOH D 120 720 65 HOH HOH . H 6 HOH D 121 721 78 HOH HOH . H 6 HOH D 122 722 18 HOH HOH . H 6 HOH D 123 723 145 HOH HOH . H 6 HOH D 124 724 100 HOH HOH . H 6 HOH D 125 725 33 HOH HOH . H 6 HOH D 126 726 75 HOH HOH . H 6 HOH D 127 727 55 HOH HOH . H 6 HOH D 128 728 91 HOH HOH . H 6 HOH D 129 729 79 HOH HOH . H 6 HOH D 130 730 39 HOH HOH . H 6 HOH D 131 731 15 HOH HOH . H 6 HOH D 132 732 125 HOH HOH . H 6 HOH D 133 733 118 HOH HOH . H 6 HOH D 134 734 54 HOH HOH . H 6 HOH D 135 735 108 HOH HOH . H 6 HOH D 136 736 52 HOH HOH . H 6 HOH D 137 737 143 HOH HOH . H 6 HOH D 138 738 53 HOH HOH . H 6 HOH D 139 739 142 HOH HOH . H 6 HOH D 140 740 159 HOH HOH . H 6 HOH D 141 741 4 HOH HOH . H 6 HOH D 142 742 136 HOH HOH . H 6 HOH D 143 743 135 HOH HOH . H 6 HOH D 144 744 226 HOH HOH . H 6 HOH D 145 745 48 HOH HOH . H 6 HOH D 146 746 173 HOH HOH . H 6 HOH D 147 747 133 HOH HOH . H 6 HOH D 148 748 225 HOH HOH . H 6 HOH D 149 749 92 HOH HOH . H 6 HOH D 150 750 157 HOH HOH . H 6 HOH D 151 751 112 HOH HOH . H 6 HOH D 152 752 207 HOH HOH . H 6 HOH D 153 753 131 HOH HOH . H 6 HOH D 154 754 204 HOH HOH . H 6 HOH D 155 755 203 HOH HOH . H 6 HOH D 156 756 96 HOH HOH . H 6 HOH D 157 757 160 HOH HOH . H 6 HOH D 158 758 156 HOH HOH . H 6 HOH D 159 759 185 HOH HOH . H 6 HOH D 160 760 181 HOH HOH . H 6 HOH D 161 761 98 HOH HOH . H 6 HOH D 162 762 89 HOH HOH . H 6 HOH D 163 763 208 HOH HOH . H 6 HOH D 164 764 218 HOH HOH . H 6 HOH D 165 765 86 HOH HOH . H 6 HOH D 166 766 162 HOH HOH . H 6 HOH D 167 767 83 HOH HOH . H 6 HOH D 168 768 154 HOH HOH . H 6 HOH D 169 769 167 HOH HOH . H 6 HOH D 170 770 219 HOH HOH . H 6 HOH D 171 771 210 HOH HOH . H 6 HOH D 172 772 132 HOH HOH . H 6 HOH D 173 773 180 HOH HOH . H 6 HOH D 174 774 137 HOH HOH . H 6 HOH D 175 775 99 HOH HOH . H 6 HOH D 176 776 220 HOH HOH . I 6 HOH E 1 801 179 HOH HOH . I 6 HOH E 2 802 43 HOH HOH . I 6 HOH E 3 803 141 HOH HOH . I 6 HOH E 4 804 69 HOH HOH . I 6 HOH E 5 805 66 HOH HOH . I 6 HOH E 6 806 217 HOH HOH . I 6 HOH E 7 807 60 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 9CR . . . E 4 25.659 3.042 203.135 1 83.07 ? C1 9CR 501 A 1 HETATM 2 C C2 9CR . . . E 4 26.903 2.302 202.666 1 85.09 ? C2 9CR 501 A 1 HETATM 3 C C3 9CR . . . E 4 28.046 2.858 203.381 1 77.04 ? C3 9CR 501 A 1 HETATM 4 C C4 9CR . . . E 4 28.156 4.247 202.956 1 76.93 ? C4 9CR 501 A 1 HETATM 5 C C5 9CR . . . E 4 27.066 4.944 203.463 1 85.13 ? C5 9CR 501 A 1 HETATM 6 C C6 9CR . . . E 4 25.767 4.4 203.442 1 72.12 ? C6 9CR 501 A 1 HETATM 7 C C7 9CR . . . E 4 24.672 5.126 203.997 1 71.1 ? C7 9CR 501 A 1 HETATM 8 C C8 9CR . . . E 4 23.247 4.617 204.08 1 61.24 ? C8 9CR 501 A 1 HETATM 9 C C9 9CR . . . E 4 22.042 5.399 204.543 1 60.87 ? C9 9CR 501 A 1 HETATM 10 C C10 9CR . . . E 4 21.915 6.721 205.236 1 57.47 ? C10 9CR 501 A 1 HETATM 11 C C11 9CR . . . E 4 22.968 7.718 205.627 1 55.72 ? C11 9CR 501 A 1 HETATM 12 C C12 9CR . . . E 4 22.37 8.96 206.281 1 55.73 ? C12 9CR 501 A 1 HETATM 13 C C13 9CR . . . E 4 23.21 10.139 206.763 1 56.43 ? C13 9CR 501 A 1 HETATM 14 C C14 9CR . . . E 4 22.466 11.304 207.385 1 54.33 ? C14 9CR 501 A 1 HETATM 15 C C15 9CR . . . E 4 23.198 12.581 207.758 1 52.7 ? C15 9CR 501 A 1 HETATM 16 C C16 9CR . . . E 4 24.666 2.843 202.082 1 97.13 ? C16 9CR 501 A 1 HETATM 17 C C17 9CR . . . E 4 25.25 2.265 204.469 1 77.24 ? C17 9CR 501 A 1 HETATM 18 C C18 9CR . . . E 4 27.385 6.224 203.939 1 95.71 ? C18 9CR 501 A 1 HETATM 19 C C19 9CR . . . E 4 20.713 4.652 204.455 1 63.5 ? C19 9CR 501 A 1 HETATM 20 C C20 9CR . . . E 4 24.729 10.157 206.493 1 62.17 ? C20 9CR 501 A 1 HETATM 21 O O1 9CR . . . E 4 24.418 12.7 207.677 1 56.44 ? O1 9CR 501 A 1 HETATM 22 O O2 9CR . . . E 4 22.579 13.563 208.121 1 59.19 ? O2 9CR 501 A 1 # _model_server_stats.io_time_ms 54 _model_server_stats.parse_time_ms 19 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 296 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 22 #