data_5JI6 # _model_server_result.job_id rrGQ6J2TmETiQZItMsndRQ _model_server_result.datetime_utc '2025-01-12 00:49:51' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5ji6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":504}' # _entry.id 5JI6 # _exptl.entry_id 5JI6 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 277.245 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 4-(3-methylpyridin-4-yl)-6-(trifluoromethyl)-1H-indazole _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5JI6 _cell.length_a 88.962 _cell.length_b 100.1 _cell.length_c 99.469 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5JI6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 119 A CYS 228 1_555 A SG CYS 339 A CYS 448 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.066 ? metalc ? metalc1 A OD1 ASP 142 A ASP 251 1_555 B MN MN . A MN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.295 ? metalc ? metalc2 A OD2 ASP 142 A ASP 251 1_555 B MN MN . A MN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.196 ? metalc ? metalc3 A OD2 ASP 153 A ASP 262 1_555 B MN MN . A MN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.868 ? metalc ? metalc4 A OD1 ASP 153 A ASP 262 1_555 C MN MN . A MN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.013 ? metalc ? metalc5 A NE2 HIS 222 A HIS 331 1_555 C MN MN . A MN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.181 ? metalc ? metalc6 A OE1 GLU 255 A GLU 364 1_555 C MN MN . A MN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.172 ? metalc ? metalc7 A OE2 GLU 350 A GLU 459 1_555 B MN MN . A MN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.985 ? metalc ? metalc8 A OE1 GLU 350 A GLU 459 1_555 C MN MN . A MN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.129 ? metalc ? metalc9 B MN MN . A MN 501 1_555 F O HOH . A HOH 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.207 ? metalc ? metalc10 B MN MN . A MN 501 1_555 F O HOH . A HOH 620 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.936 ? metalc ? metalc11 C MN MN . A MN 502 1_555 E N15 6KN . A 6KN 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.146 ? metalc ? metalc12 C MN MN . A MN 502 1_555 F O HOH . A HOH 620 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.335 ? # _chem_comp.formula 'C14 H10 F3 N3' _chem_comp.formula_weight 277.245 _chem_comp.id 6KN _chem_comp.mon_nstd_flag . _chem_comp.name 4-(3-methylpyridin-4-yl)-6-(trifluoromethyl)-1H-indazole _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag F20 C18 6KN sing 1 n n F21 C18 6KN sing 2 n n C11 C12 6KN doub 3 n y C11 C10 6KN sing 4 n y N13 C12 6KN sing 5 n y N13 N15 6KN sing 6 n y C1 C2 6KN sing 7 n n C18 C10 6KN sing 8 n n C18 F19 6KN sing 9 n n C12 C17 6KN sing 10 n y C10 C9 6KN doub 11 n y N15 C16 6KN doub 12 n y C17 C16 6KN sing 13 n y C17 C8 6KN doub 14 n y C9 C8 6KN sing 15 n y C8 C7 6KN sing 16 n n C2 C7 6KN doub 17 n y C2 C3 6KN sing 18 n y C7 C6 6KN sing 19 n y C3 N4 6KN doub 20 n y C6 C5 6KN doub 21 n y N4 C5 6KN sing 22 n y C5 H1 6KN sing 23 n n C6 H2 6KN sing 24 n n C1 H3 6KN sing 25 n n C1 H4 6KN sing 26 n n C1 H5 6KN sing 27 n n C3 H6 6KN sing 28 n n C9 H7 6KN sing 29 n n C11 H8 6KN sing 30 n n N13 H9 6KN sing 31 n n C16 H10 6KN sing 32 n n # _atom_sites.entry_id 5JI6 _atom_sites.fract_transf_matrix[1][1] 0.011241 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00999 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010053 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MN A 1 501 480 MN MN . C 2 MN A 1 502 481 MN MN . D 3 SO4 A 1 503 484 SO4 SO4 . E 4 6KN A 1 504 500 6KN LIG . F 5 HOH A 1 601 596 HOH HOH . F 5 HOH A 2 602 612 HOH HOH . F 5 HOH A 3 603 516 HOH HOH . F 5 HOH A 4 604 634 HOH HOH . F 5 HOH A 5 605 631 HOH HOH . F 5 HOH A 6 606 597 HOH HOH . F 5 HOH A 7 607 635 HOH HOH . F 5 HOH A 8 608 602 HOH HOH . F 5 HOH A 9 609 520 HOH HOH . F 5 HOH A 10 610 530 HOH HOH . F 5 HOH A 11 611 517 HOH HOH . F 5 HOH A 12 612 557 HOH HOH . F 5 HOH A 13 613 603 HOH HOH . F 5 HOH A 14 614 598 HOH HOH . F 5 HOH A 15 615 546 HOH HOH . F 5 HOH A 16 616 605 HOH HOH . F 5 HOH A 17 617 633 HOH HOH . F 5 HOH A 18 618 538 HOH HOH . F 5 HOH A 19 619 518 HOH HOH . F 5 HOH A 20 620 632 HOH HOH . F 5 HOH A 21 621 581 HOH HOH . F 5 HOH A 22 622 563 HOH HOH . F 5 HOH A 23 623 529 HOH HOH . F 5 HOH A 24 624 569 HOH HOH . F 5 HOH A 25 625 512 HOH HOH . F 5 HOH A 26 626 556 HOH HOH . F 5 HOH A 27 627 523 HOH HOH . F 5 HOH A 28 628 515 HOH HOH . F 5 HOH A 29 629 625 HOH HOH . F 5 HOH A 30 630 600 HOH HOH . F 5 HOH A 31 631 606 HOH HOH . F 5 HOH A 32 632 587 HOH HOH . F 5 HOH A 33 633 521 HOH HOH . F 5 HOH A 34 634 535 HOH HOH . F 5 HOH A 35 635 539 HOH HOH . F 5 HOH A 36 636 610 HOH HOH . F 5 HOH A 37 637 543 HOH HOH . F 5 HOH A 38 638 571 HOH HOH . F 5 HOH A 39 639 511 HOH HOH . F 5 HOH A 40 640 545 HOH HOH . F 5 HOH A 41 641 526 HOH HOH . F 5 HOH A 42 642 636 HOH HOH . F 5 HOH A 43 643 564 HOH HOH . F 5 HOH A 44 644 616 HOH HOH . F 5 HOH A 45 645 630 HOH HOH . F 5 HOH A 46 646 558 HOH HOH . F 5 HOH A 47 647 548 HOH HOH . F 5 HOH A 48 648 537 HOH HOH . F 5 HOH A 49 649 561 HOH HOH . F 5 HOH A 50 650 574 HOH HOH . F 5 HOH A 51 651 527 HOH HOH . F 5 HOH A 52 652 514 HOH HOH . F 5 HOH A 53 653 601 HOH HOH . F 5 HOH A 54 654 547 HOH HOH . F 5 HOH A 55 655 608 HOH HOH . F 5 HOH A 56 656 604 HOH HOH . F 5 HOH A 57 657 611 HOH HOH . F 5 HOH A 58 658 559 HOH HOH . F 5 HOH A 59 659 555 HOH HOH . F 5 HOH A 60 660 534 HOH HOH . F 5 HOH A 61 661 613 HOH HOH . F 5 HOH A 62 662 528 HOH HOH . F 5 HOH A 63 663 628 HOH HOH . F 5 HOH A 64 664 519 HOH HOH . F 5 HOH A 65 665 589 HOH HOH . F 5 HOH A 66 666 525 HOH HOH . F 5 HOH A 67 667 513 HOH HOH . F 5 HOH A 68 668 639 HOH HOH . F 5 HOH A 69 669 560 HOH HOH . F 5 HOH A 70 670 544 HOH HOH . F 5 HOH A 71 671 621 HOH HOH . F 5 HOH A 72 672 641 HOH HOH . F 5 HOH A 73 673 595 HOH HOH . F 5 HOH A 74 674 577 HOH HOH . F 5 HOH A 75 675 567 HOH HOH . F 5 HOH A 76 676 531 HOH HOH . F 5 HOH A 77 677 542 HOH HOH . F 5 HOH A 78 678 536 HOH HOH . F 5 HOH A 79 679 614 HOH HOH . F 5 HOH A 80 680 607 HOH HOH . F 5 HOH A 81 681 565 HOH HOH . F 5 HOH A 82 682 584 HOH HOH . F 5 HOH A 83 683 582 HOH HOH . F 5 HOH A 84 684 599 HOH HOH . F 5 HOH A 85 685 541 HOH HOH . F 5 HOH A 86 686 637 HOH HOH . F 5 HOH A 87 687 524 HOH HOH . F 5 HOH A 88 688 619 HOH HOH . F 5 HOH A 89 689 551 HOH HOH . F 5 HOH A 90 690 594 HOH HOH . F 5 HOH A 91 691 510 HOH HOH . F 5 HOH A 92 692 593 HOH HOH . F 5 HOH A 93 693 553 HOH HOH . F 5 HOH A 94 694 572 HOH HOH . F 5 HOH A 95 695 617 HOH HOH . F 5 HOH A 96 696 580 HOH HOH . F 5 HOH A 97 697 522 HOH HOH . F 5 HOH A 98 698 533 HOH HOH . F 5 HOH A 99 699 624 HOH HOH . F 5 HOH A 100 700 568 HOH HOH . F 5 HOH A 101 701 549 HOH HOH . F 5 HOH A 102 702 554 HOH HOH . F 5 HOH A 103 703 626 HOH HOH . F 5 HOH A 104 704 622 HOH HOH . F 5 HOH A 105 705 570 HOH HOH . F 5 HOH A 106 706 590 HOH HOH . F 5 HOH A 107 707 627 HOH HOH . F 5 HOH A 108 708 623 HOH HOH . F 5 HOH A 109 709 578 HOH HOH . F 5 HOH A 110 710 540 HOH HOH . F 5 HOH A 111 711 566 HOH HOH . F 5 HOH A 112 712 592 HOH HOH . F 5 HOH A 113 713 609 HOH HOH . F 5 HOH A 114 714 575 HOH HOH . F 5 HOH A 115 715 579 HOH HOH . F 5 HOH A 116 716 618 HOH HOH . F 5 HOH A 117 717 629 HOH HOH . F 5 HOH A 118 718 640 HOH HOH . F 5 HOH A 119 719 591 HOH HOH . F 5 HOH A 120 720 586 HOH HOH . F 5 HOH A 121 721 562 HOH HOH . F 5 HOH A 122 722 638 HOH HOH . F 5 HOH A 123 723 585 HOH HOH . F 5 HOH A 124 724 620 HOH HOH . F 5 HOH A 125 725 615 HOH HOH . F 5 HOH A 126 726 576 HOH HOH . F 5 HOH A 127 727 583 HOH HOH . F 5 HOH A 128 728 588 HOH HOH . F 5 HOH A 129 729 573 HOH HOH . F 5 HOH A 130 730 552 HOH HOH . F 5 HOH A 131 731 532 HOH HOH . F 5 HOH A 132 732 550 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C5 6KN . . . E 4 13.954 30.489 18.697 1 77.85 ? C5 6KN 504 A 1 HETATM 2 C C6 6KN . . . E 4 15.184 30.381 18.072 1 72.87 ? C6 6KN 504 A 1 HETATM 3 C C7 6KN . . . E 4 15.453 31.122 16.905 1 65.63 ? C7 6KN 504 A 1 HETATM 4 C C8 6KN . . . E 4 16.802 30.984 16.276 1 64.4 ? C8 6KN 504 A 1 HETATM 5 C C10 6KN . . . E 4 18.825 32.056 15.461 1 61.82 ? C10 6KN 504 A 1 HETATM 6 C C17 6KN . . . E 4 17.387 29.724 15.955 1 68.41 ? C17 6KN 504 A 1 HETATM 7 C C1 6KN . . . E 4 14.556 32.858 15.211 1 64.67 ? C1 6KN 504 A 1 HETATM 8 C C2 6KN . . . E 4 14.426 31.985 16.436 1 72.32 ? C2 6KN 504 A 1 HETATM 9 C C3 6KN . . . E 4 13.226 32.032 17.131 1 79.93 ? C3 6KN 504 A 1 HETATM 10 N N4 6KN . . . E 4 13.026 31.3 18.215 1 82.51 ? N4 6KN 504 A 1 HETATM 11 C C9 6KN . . . E 4 17.558 32.124 16.029 1 63.85 ? C9 6KN 504 A 1 HETATM 12 C C11 6KN . . . E 4 19.404 30.842 15.13 1 51.27 ? C11 6KN 504 A 1 HETATM 13 C C12 6KN . . . E 4 18.689 29.668 15.38 1 63.18 ? C12 6KN 504 A 1 HETATM 14 N N13 6KN . . . E 4 18.972 28.343 15.182 1 60.3 ? N13 6KN 504 A 1 HETATM 15 N N15 6KN . . . E 4 17.876 27.599 15.637 1 67.75 ? N15 6KN 504 A 1 HETATM 16 C C16 6KN . . . E 4 16.944 28.39 16.078 1 58.92 ? C16 6KN 504 A 1 HETATM 17 C C18 6KN . . . E 4 19.544 33.356 15.232 1 55.7 ? C18 6KN 504 A 1 HETATM 18 F F19 6KN . . . E 4 20.018 33.786 16.462 1 56.29 ? F19 6KN 504 A 1 HETATM 19 F F20 6KN . . . E 4 20.617 33.192 14.349 1 53.74 ? F20 6KN 504 A 1 HETATM 20 F F21 6KN . . . E 4 18.653 34.325 14.769 1 58.46 ? F21 6KN 504 A 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 302 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 20 #