data_5JID # _model_server_result.job_id 90iiMjb1faJnryw-uq_Hzg _model_server_result.datetime_utc '2024-11-24 16:35:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5jid # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":301}' # _entry.id 5JID # _exptl.entry_id 5JID _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 414.068 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'pentadecafluorooctanoic acid' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5JID _cell.length_a 42.653 _cell.length_b 85.674 _cell.length_c 63.42 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5JID _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G 1 1 A,B,C,D,E,F,G 1 2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 B O ASP 99 B ASP 99 1_555 E NA NA . B NA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.178 ? metalc ? metalc2 E NA NA . B NA 302 1_555 G O HOH . B HOH 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.225 ? metalc ? metalc3 E NA NA . B NA 302 1_555 G O HOH . B HOH 457 4_456 ? ? ? ? ? ? ? ? ? ? ? ? 2.462 ? metalc ? metalc4 E NA NA . B NA 302 1_555 G O HOH . B HOH 459 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.314 ? metalc ? metalc5 E NA NA . B NA 302 1_555 G O HOH . B HOH 480 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.59 ? # _chem_comp.formula 'C8 H F15 O2' _chem_comp.formula_weight 414.068 _chem_comp.id 8PF _chem_comp.mon_nstd_flag . _chem_comp.name 'pentadecafluorooctanoic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O09 C07 8PF doub 1 n n O08 C07 8PF sing 2 n n C07 C04 8PF sing 3 n n F06 C04 8PF sing 4 n n C04 F05 8PF sing 5 n n C04 C02 8PF sing 6 n n F01 C02 8PF sing 7 n n C02 F03 8PF sing 8 n n C02 C10 8PF sing 9 n n F11 C10 8PF sing 10 n n C10 F12 8PF sing 11 n n C10 C13 8PF sing 12 n n F14 C13 8PF sing 13 n n C13 F15 8PF sing 14 n n C13 C16 8PF sing 15 n n F17 C16 8PF sing 16 n n C16 F18 8PF sing 17 n n C16 C19 8PF sing 18 n n F24 C22 8PF sing 19 n n C19 C22 8PF sing 20 n n C19 F21 8PF sing 21 n n C19 F20 8PF sing 22 n n C22 F25 8PF sing 23 n n C22 F23 8PF sing 24 n n O08 H1 8PF sing 25 n n # _atom_sites.entry_id 5JID _atom_sites.fract_transf_matrix[1][1] 0.023445 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011672 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015768 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 8PF A 1 301 301 8PF PFO . D 2 8PF B 1 301 301 8PF PFO . E 3 NA B 1 302 1 NA NA . F 4 HOH A 1 401 181 HOH HOH . F 4 HOH A 2 402 42 HOH HOH . F 4 HOH A 3 403 120 HOH HOH . F 4 HOH A 4 404 91 HOH HOH . F 4 HOH A 5 405 70 HOH HOH . F 4 HOH A 6 406 168 HOH HOH . F 4 HOH A 7 407 131 HOH HOH . F 4 HOH A 8 408 82 HOH HOH . F 4 HOH A 9 409 162 HOH HOH . F 4 HOH A 10 410 169 HOH HOH . F 4 HOH A 11 411 190 HOH HOH . F 4 HOH A 12 412 139 HOH HOH . F 4 HOH A 13 413 161 HOH HOH . F 4 HOH A 14 414 180 HOH HOH . F 4 HOH A 15 415 90 HOH HOH . F 4 HOH A 16 416 37 HOH HOH . F 4 HOH A 17 417 195 HOH HOH . F 4 HOH A 18 418 72 HOH HOH . F 4 HOH A 19 419 17 HOH HOH . F 4 HOH A 20 420 149 HOH HOH . F 4 HOH A 21 421 184 HOH HOH . F 4 HOH A 22 422 194 HOH HOH . F 4 HOH A 23 423 14 HOH HOH . F 4 HOH A 24 424 62 HOH HOH . F 4 HOH A 25 425 5 HOH HOH . F 4 HOH A 26 426 171 HOH HOH . F 4 HOH A 27 427 60 HOH HOH . F 4 HOH A 28 428 8 HOH HOH . F 4 HOH A 29 429 108 HOH HOH . F 4 HOH A 30 430 163 HOH HOH . F 4 HOH A 31 431 93 HOH HOH . F 4 HOH A 32 432 40 HOH HOH . F 4 HOH A 33 433 188 HOH HOH . F 4 HOH A 34 434 30 HOH HOH . F 4 HOH A 35 435 21 HOH HOH . F 4 HOH A 36 436 154 HOH HOH . F 4 HOH A 37 437 23 HOH HOH . F 4 HOH A 38 438 13 HOH HOH . F 4 HOH A 39 439 200 HOH HOH . F 4 HOH A 40 440 210 HOH HOH . F 4 HOH A 41 441 11 HOH HOH . F 4 HOH A 42 442 3 HOH HOH . F 4 HOH A 43 443 98 HOH HOH . F 4 HOH A 44 444 186 HOH HOH . F 4 HOH A 45 445 141 HOH HOH . F 4 HOH A 46 446 146 HOH HOH . F 4 HOH A 47 447 4 HOH HOH . F 4 HOH A 48 448 47 HOH HOH . F 4 HOH A 49 449 12 HOH HOH . F 4 HOH A 50 450 24 HOH HOH . F 4 HOH A 51 451 29 HOH HOH . F 4 HOH A 52 452 89 HOH HOH . F 4 HOH A 53 453 185 HOH HOH . F 4 HOH A 54 454 28 HOH HOH . F 4 HOH A 55 455 55 HOH HOH . F 4 HOH A 56 456 132 HOH HOH . F 4 HOH A 57 457 211 HOH HOH . F 4 HOH A 58 458 201 HOH HOH . F 4 HOH A 59 459 41 HOH HOH . F 4 HOH A 60 460 25 HOH HOH . F 4 HOH A 61 461 112 HOH HOH . F 4 HOH A 62 462 157 HOH HOH . F 4 HOH A 63 463 51 HOH HOH . F 4 HOH A 64 464 109 HOH HOH . F 4 HOH A 65 465 133 HOH HOH . F 4 HOH A 66 466 153 HOH HOH . F 4 HOH A 67 467 130 HOH HOH . F 4 HOH A 68 468 2 HOH HOH . F 4 HOH A 69 469 16 HOH HOH . F 4 HOH A 70 470 83 HOH HOH . F 4 HOH A 71 471 121 HOH HOH . F 4 HOH A 72 472 178 HOH HOH . F 4 HOH A 73 473 88 HOH HOH . F 4 HOH A 74 474 6 HOH HOH . F 4 HOH A 75 475 34 HOH HOH . F 4 HOH A 76 476 43 HOH HOH . F 4 HOH A 77 477 61 HOH HOH . F 4 HOH A 78 478 84 HOH HOH . F 4 HOH A 79 479 145 HOH HOH . F 4 HOH A 80 480 74 HOH HOH . F 4 HOH A 81 481 170 HOH HOH . F 4 HOH A 82 482 175 HOH HOH . F 4 HOH A 83 483 156 HOH HOH . F 4 HOH A 84 484 94 HOH HOH . F 4 HOH A 85 485 189 HOH HOH . F 4 HOH A 86 486 159 HOH HOH . F 4 HOH A 87 487 209 HOH HOH . F 4 HOH A 88 488 97 HOH HOH . F 4 HOH A 89 489 152 HOH HOH . F 4 HOH A 90 490 125 HOH HOH . F 4 HOH A 91 491 99 HOH HOH . F 4 HOH A 92 492 78 HOH HOH . F 4 HOH A 93 493 27 HOH HOH . F 4 HOH A 94 494 202 HOH HOH . F 4 HOH A 95 495 191 HOH HOH . F 4 HOH A 96 496 96 HOH HOH . F 4 HOH A 97 497 107 HOH HOH . F 4 HOH A 98 498 67 HOH HOH . F 4 HOH A 99 499 192 HOH HOH . F 4 HOH A 100 500 198 HOH HOH . F 4 HOH A 101 501 77 HOH HOH . G 4 HOH B 1 401 76 HOH HOH . G 4 HOH B 2 402 127 HOH HOH . G 4 HOH B 3 403 155 HOH HOH . G 4 HOH B 4 404 102 HOH HOH . G 4 HOH B 5 405 80 HOH HOH . G 4 HOH B 6 406 103 HOH HOH . G 4 HOH B 7 407 36 HOH HOH . G 4 HOH B 8 408 174 HOH HOH . G 4 HOH B 9 409 49 HOH HOH . G 4 HOH B 10 410 100 HOH HOH . G 4 HOH B 11 411 204 HOH HOH . G 4 HOH B 12 412 46 HOH HOH . G 4 HOH B 13 413 65 HOH HOH . G 4 HOH B 14 414 52 HOH HOH . G 4 HOH B 15 415 20 HOH HOH . G 4 HOH B 16 416 79 HOH HOH . G 4 HOH B 17 417 75 HOH HOH . G 4 HOH B 18 418 10 HOH HOH . G 4 HOH B 19 419 105 HOH HOH . G 4 HOH B 20 420 19 HOH HOH . G 4 HOH B 21 421 147 HOH HOH . G 4 HOH B 22 422 205 HOH HOH . G 4 HOH B 23 423 203 HOH HOH . G 4 HOH B 24 424 39 HOH HOH . G 4 HOH B 25 425 48 HOH HOH . G 4 HOH B 26 426 117 HOH HOH . G 4 HOH B 27 427 56 HOH HOH . G 4 HOH B 28 428 197 HOH HOH . G 4 HOH B 29 429 143 HOH HOH . G 4 HOH B 30 430 31 HOH HOH . G 4 HOH B 31 431 126 HOH HOH . G 4 HOH B 32 432 164 HOH HOH . G 4 HOH B 33 433 144 HOH HOH . G 4 HOH B 34 434 54 HOH HOH . G 4 HOH B 35 435 124 HOH HOH . G 4 HOH B 36 436 58 HOH HOH . G 4 HOH B 37 437 142 HOH HOH . G 4 HOH B 38 438 38 HOH HOH . G 4 HOH B 39 439 114 HOH HOH . G 4 HOH B 40 440 137 HOH HOH . G 4 HOH B 41 441 73 HOH HOH . G 4 HOH B 42 442 166 HOH HOH . G 4 HOH B 43 443 26 HOH HOH . G 4 HOH B 44 444 33 HOH HOH . G 4 HOH B 45 445 208 HOH HOH . G 4 HOH B 46 446 15 HOH HOH . G 4 HOH B 47 447 148 HOH HOH . G 4 HOH B 48 448 50 HOH HOH . G 4 HOH B 49 449 123 HOH HOH . G 4 HOH B 50 450 22 HOH HOH . G 4 HOH B 51 451 44 HOH HOH . G 4 HOH B 52 452 32 HOH HOH . G 4 HOH B 53 453 101 HOH HOH . G 4 HOH B 54 454 53 HOH HOH . G 4 HOH B 55 455 7 HOH HOH . G 4 HOH B 56 456 176 HOH HOH . G 4 HOH B 57 457 104 HOH HOH . G 4 HOH B 58 458 111 HOH HOH . G 4 HOH B 59 459 63 HOH HOH . G 4 HOH B 60 460 68 HOH HOH . G 4 HOH B 61 461 9 HOH HOH . G 4 HOH B 62 462 86 HOH HOH . G 4 HOH B 63 463 151 HOH HOH . G 4 HOH B 64 464 45 HOH HOH . G 4 HOH B 65 465 110 HOH HOH . G 4 HOH B 66 466 92 HOH HOH . G 4 HOH B 67 467 199 HOH HOH . G 4 HOH B 68 468 35 HOH HOH . G 4 HOH B 69 469 179 HOH HOH . G 4 HOH B 70 470 69 HOH HOH . G 4 HOH B 71 471 113 HOH HOH . G 4 HOH B 72 472 71 HOH HOH . G 4 HOH B 73 473 18 HOH HOH . G 4 HOH B 74 474 136 HOH HOH . G 4 HOH B 75 475 182 HOH HOH . G 4 HOH B 76 476 140 HOH HOH . G 4 HOH B 77 477 106 HOH HOH . G 4 HOH B 78 478 1 HOH HOH . G 4 HOH B 79 479 115 HOH HOH . G 4 HOH B 80 480 87 HOH HOH . G 4 HOH B 81 481 122 HOH HOH . G 4 HOH B 82 482 119 HOH HOH . G 4 HOH B 83 483 207 HOH HOH . G 4 HOH B 84 484 150 HOH HOH . G 4 HOH B 85 485 193 HOH HOH . G 4 HOH B 86 486 81 HOH HOH . G 4 HOH B 87 487 134 HOH HOH . G 4 HOH B 88 488 64 HOH HOH . G 4 HOH B 89 489 173 HOH HOH . G 4 HOH B 90 490 85 HOH HOH . G 4 HOH B 91 491 167 HOH HOH . G 4 HOH B 92 492 118 HOH HOH . G 4 HOH B 93 493 129 HOH HOH . G 4 HOH B 94 494 128 HOH HOH . G 4 HOH B 95 495 177 HOH HOH . G 4 HOH B 96 496 206 HOH HOH . G 4 HOH B 97 497 172 HOH HOH . G 4 HOH B 98 498 95 HOH HOH . G 4 HOH B 99 499 135 HOH HOH . G 4 HOH B 100 500 116 HOH HOH . G 4 HOH B 101 501 57 HOH HOH . G 4 HOH B 102 502 165 HOH HOH . G 4 HOH B 103 503 183 HOH HOH . G 4 HOH B 104 504 160 HOH HOH . G 4 HOH B 105 505 196 HOH HOH . G 4 HOH B 106 506 138 HOH HOH . G 4 HOH B 107 507 59 HOH HOH . G 4 HOH B 108 508 187 HOH HOH . G 4 HOH B 109 509 66 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C13 8PF . . . D 2 0.096 -0.557 24.65 0.5 33.72 ? C13 8PF 301 B 1 HETATM 2 C C16 8PF . . . D 2 0.384 0.096 23.295 0.5 33.35 ? C16 8PF 301 B 1 HETATM 3 C C19 8PF . . . D 2 -0.499 -0.52 22.238 0.5 37.92 ? C19 8PF 301 B 1 HETATM 4 C C10 8PF . . . D 2 -0.102 0.426 25.78 0.5 34.04 ? C10 8PF 301 B 1 HETATM 5 C C22 8PF . . . D 2 0.04 -1.861 21.77 0.5 39.22 ? C22 8PF 301 B 1 HETATM 6 F F01 8PF . . . D 2 -1.143 -0.94 27.356 0.5 36.59 ? F01 8PF 301 B 1 HETATM 7 C C02 8PF . . . D 2 0.019 -0.328 27.091 0.5 37.44 ? C02 8PF 301 B 1 HETATM 8 F F03 8PF . . . D 2 1.001 -1.237 27.017 0.5 38.09 ? F03 8PF 301 B 1 HETATM 9 C C04 8PF . . . D 2 0.373 0.611 28.218 0.5 40.87 ? C04 8PF 301 B 1 HETATM 10 F F05 8PF . . . D 2 -0.56 1.566 28.335 0.5 41.54 ? F05 8PF 301 B 1 HETATM 11 F F06 8PF . . . D 2 1.549 1.179 27.936 0.5 41.39 ? F06 8PF 301 B 1 HETATM 12 C C07 8PF . . . D 2 0.488 -0.192 29.499 0.5 42.62 ? C07 8PF 301 B 1 HETATM 13 O O08 8PF . . . D 2 -0.374 -0.047 30.404 0.5 43.04 ? O08 8PF 301 B 1 HETATM 14 O O09 8PF . . . D 2 1.436 -1.014 29.657 0.5 43.23 -1 O09 8PF 301 B 1 HETATM 15 F F11 8PF . . . D 2 0.857 1.36 25.722 0.5 32.84 ? F11 8PF 301 B 1 HETATM 16 F F12 8PF . . . D 2 -1.333 0.963 25.704 0.5 32.29 ? F12 8PF 301 B 1 HETATM 17 F F14 8PF . . . D 2 -0.951 -1.406 24.621 0.5 35.01 ? F14 8PF 301 B 1 HETATM 18 F F15 8PF . . . D 2 1.181 -1.266 24.965 0.5 33.41 ? F15 8PF 301 B 1 HETATM 19 F F17 8PF . . . D 2 1.674 -0.127 22.981 0.5 30.83 ? F17 8PF 301 B 1 HETATM 20 F F18 8PF . . . D 2 0.153 1.428 23.276 0.5 33.45 ? F18 8PF 301 B 1 HETATM 21 F F20 8PF . . . D 2 -0.625 0.318 21.196 0.5 39.62 ? F20 8PF 301 B 1 HETATM 22 F F21 8PF . . . D 2 -1.69 -0.66 22.827 0.5 39.47 ? F21 8PF 301 B 1 HETATM 23 F F23 8PF . . . D 2 0.111 -2.703 22.8 0.5 38.63 ? F23 8PF 301 B 1 HETATM 24 F F24 8PF . . . D 2 1.257 -1.734 21.223 0.5 39.33 ? F24 8PF 301 B 1 HETATM 25 F F25 8PF . . . D 2 -0.778 -2.393 20.861 0.5 41.19 ? F25 8PF 301 B 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 386 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 25 #