data_5JIJ # _model_server_result.job_id zwbJbVq2BvMtdnKbn2GsOw _model_server_result.datetime_utc '2024-11-27 09:35:54' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5jij # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":509}' # _entry.id 5JIJ # _exptl.entry_id 5JIJ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 9 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5JIJ _cell.length_a 126.86 _cell.length_b 126.86 _cell.length_c 207.19 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5JIJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 98 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 41 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I,J,K,L 1 1 A,B,C,D,E,F,G,H,I,J,K,L 1 2 A,B,C,D,E,F,G,H,I,J,K,L 1 3 A,B,C,D,E,F,G,H,I,J,K,L 1 4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 7_545 y+1/2,x-1/2,-z+1/2 0 1 0 1 0 0 0 0 -1 63.43 -63.43 103.595 3 'crystal symmetry operation' 10_655 -x+1,-y,z -1 0 0 0 -1 0 0 0 1 126.86 0 0 4 'crystal symmetry operation' 16_555 -y+1/2,-x+1/2,-z+1/2 0 -1 0 -1 0 0 0 0 -1 63.43 63.43 103.595 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 E N N ? 3 F N N ? 3 G N N ? 3 H N N ? 3 I N N ? 3 J N N ? 3 K N N # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 5JIJ _atom_sites.fract_transf_matrix[1][1] 0.007883 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007883 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004826 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NHE A 1 501 1 NHE NHE . C 3 EDO A 1 502 1 EDO EDO . D 3 EDO A 1 503 2 EDO EDO . E 3 EDO A 1 504 3 EDO EDO . F 3 EDO A 1 505 4 EDO EDO . G 3 EDO A 1 506 5 EDO EDO . H 3 EDO A 1 507 6 EDO EDO . I 3 EDO A 1 508 7 EDO EDO . J 3 EDO A 1 509 8 EDO EDO . K 3 EDO A 1 510 9 EDO EDO . L 4 HOH A 1 601 197 HOH HOH . L 4 HOH A 2 602 175 HOH HOH . L 4 HOH A 3 603 70 HOH HOH . L 4 HOH A 4 604 209 HOH HOH . L 4 HOH A 5 605 142 HOH HOH . L 4 HOH A 6 606 167 HOH HOH . L 4 HOH A 7 607 185 HOH HOH . L 4 HOH A 8 608 169 HOH HOH . L 4 HOH A 9 609 177 HOH HOH . L 4 HOH A 10 610 34 HOH HOH . L 4 HOH A 11 611 257 HOH HOH . L 4 HOH A 12 612 200 HOH HOH . L 4 HOH A 13 613 222 HOH HOH . L 4 HOH A 14 614 270 HOH HOH . L 4 HOH A 15 615 181 HOH HOH . L 4 HOH A 16 616 176 HOH HOH . L 4 HOH A 17 617 277 HOH HOH . L 4 HOH A 18 618 252 HOH HOH . L 4 HOH A 19 619 246 HOH HOH . L 4 HOH A 20 620 22 HOH HOH . L 4 HOH A 21 621 224 HOH HOH . L 4 HOH A 22 622 255 HOH HOH . L 4 HOH A 23 623 73 HOH HOH . L 4 HOH A 24 624 241 HOH HOH . L 4 HOH A 25 625 129 HOH HOH . L 4 HOH A 26 626 184 HOH HOH . L 4 HOH A 27 627 143 HOH HOH . L 4 HOH A 28 628 174 HOH HOH . L 4 HOH A 29 629 96 HOH HOH . L 4 HOH A 30 630 130 HOH HOH . L 4 HOH A 31 631 140 HOH HOH . L 4 HOH A 32 632 20 HOH HOH . L 4 HOH A 33 633 189 HOH HOH . L 4 HOH A 34 634 198 HOH HOH . L 4 HOH A 35 635 232 HOH HOH . L 4 HOH A 36 636 36 HOH HOH . L 4 HOH A 37 637 172 HOH HOH . L 4 HOH A 38 638 221 HOH HOH . L 4 HOH A 39 639 233 HOH HOH . L 4 HOH A 40 640 228 HOH HOH . L 4 HOH A 41 641 295 HOH HOH . L 4 HOH A 42 642 116 HOH HOH . L 4 HOH A 43 643 65 HOH HOH . L 4 HOH A 44 644 111 HOH HOH . L 4 HOH A 45 645 41 HOH HOH . L 4 HOH A 46 646 258 HOH HOH . L 4 HOH A 47 647 141 HOH HOH . L 4 HOH A 48 648 91 HOH HOH . L 4 HOH A 49 649 17 HOH HOH . L 4 HOH A 50 650 25 HOH HOH . L 4 HOH A 51 651 37 HOH HOH . L 4 HOH A 52 652 245 HOH HOH . L 4 HOH A 53 653 60 HOH HOH . L 4 HOH A 54 654 57 HOH HOH . L 4 HOH A 55 655 81 HOH HOH . L 4 HOH A 56 656 251 HOH HOH . L 4 HOH A 57 657 259 HOH HOH . L 4 HOH A 58 658 3 HOH HOH . L 4 HOH A 59 659 93 HOH HOH . L 4 HOH A 60 660 263 HOH HOH . L 4 HOH A 61 661 48 HOH HOH . L 4 HOH A 62 662 136 HOH HOH . L 4 HOH A 63 663 40 HOH HOH . L 4 HOH A 64 664 121 HOH HOH . L 4 HOH A 65 665 110 HOH HOH . L 4 HOH A 66 666 249 HOH HOH . L 4 HOH A 67 667 35 HOH HOH . L 4 HOH A 68 668 281 HOH HOH . L 4 HOH A 69 669 144 HOH HOH . L 4 HOH A 70 670 279 HOH HOH . L 4 HOH A 71 671 66 HOH HOH . L 4 HOH A 72 672 261 HOH HOH . L 4 HOH A 73 673 11 HOH HOH . L 4 HOH A 74 674 44 HOH HOH . L 4 HOH A 75 675 109 HOH HOH . L 4 HOH A 76 676 100 HOH HOH . L 4 HOH A 77 677 223 HOH HOH . L 4 HOH A 78 678 79 HOH HOH . L 4 HOH A 79 679 250 HOH HOH . L 4 HOH A 80 680 191 HOH HOH . L 4 HOH A 81 681 4 HOH HOH . L 4 HOH A 82 682 132 HOH HOH . L 4 HOH A 83 683 80 HOH HOH . L 4 HOH A 84 684 168 HOH HOH . L 4 HOH A 85 685 98 HOH HOH . L 4 HOH A 86 686 204 HOH HOH . L 4 HOH A 87 687 213 HOH HOH . L 4 HOH A 88 688 63 HOH HOH . L 4 HOH A 89 689 28 HOH HOH . L 4 HOH A 90 690 7 HOH HOH . L 4 HOH A 91 691 135 HOH HOH . L 4 HOH A 92 692 104 HOH HOH . L 4 HOH A 93 693 292 HOH HOH . L 4 HOH A 94 694 30 HOH HOH . L 4 HOH A 95 695 193 HOH HOH . L 4 HOH A 96 696 29 HOH HOH . L 4 HOH A 97 697 186 HOH HOH . L 4 HOH A 98 698 1 HOH HOH . L 4 HOH A 99 699 154 HOH HOH . L 4 HOH A 100 700 285 HOH HOH . L 4 HOH A 101 701 52 HOH HOH . L 4 HOH A 102 702 94 HOH HOH . L 4 HOH A 103 703 89 HOH HOH . L 4 HOH A 104 704 236 HOH HOH . L 4 HOH A 105 705 54 HOH HOH . L 4 HOH A 106 706 74 HOH HOH . L 4 HOH A 107 707 278 HOH HOH . L 4 HOH A 108 708 164 HOH HOH . L 4 HOH A 109 709 64 HOH HOH . L 4 HOH A 110 710 137 HOH HOH . L 4 HOH A 111 711 6 HOH HOH . L 4 HOH A 112 712 240 HOH HOH . L 4 HOH A 113 713 12 HOH HOH . L 4 HOH A 114 714 46 HOH HOH . L 4 HOH A 115 715 146 HOH HOH . L 4 HOH A 116 716 138 HOH HOH . L 4 HOH A 117 717 124 HOH HOH . L 4 HOH A 118 718 43 HOH HOH . L 4 HOH A 119 719 211 HOH HOH . L 4 HOH A 120 720 15 HOH HOH . L 4 HOH A 121 721 39 HOH HOH . L 4 HOH A 122 722 14 HOH HOH . L 4 HOH A 123 723 5 HOH HOH . L 4 HOH A 124 724 214 HOH HOH . L 4 HOH A 125 725 83 HOH HOH . L 4 HOH A 126 726 71 HOH HOH . L 4 HOH A 127 727 210 HOH HOH . L 4 HOH A 128 728 105 HOH HOH . L 4 HOH A 129 729 27 HOH HOH . L 4 HOH A 130 730 19 HOH HOH . L 4 HOH A 131 731 296 HOH HOH . L 4 HOH A 132 732 10 HOH HOH . L 4 HOH A 133 733 242 HOH HOH . L 4 HOH A 134 734 8 HOH HOH . L 4 HOH A 135 735 2 HOH HOH . L 4 HOH A 136 736 260 HOH HOH . L 4 HOH A 137 737 68 HOH HOH . L 4 HOH A 138 738 23 HOH HOH . L 4 HOH A 139 739 31 HOH HOH . L 4 HOH A 140 740 47 HOH HOH . L 4 HOH A 141 741 139 HOH HOH . L 4 HOH A 142 742 117 HOH HOH . L 4 HOH A 143 743 21 HOH HOH . L 4 HOH A 144 744 182 HOH HOH . L 4 HOH A 145 745 95 HOH HOH . L 4 HOH A 146 746 218 HOH HOH . L 4 HOH A 147 747 87 HOH HOH . L 4 HOH A 148 748 33 HOH HOH . L 4 HOH A 149 749 269 HOH HOH . L 4 HOH A 150 750 127 HOH HOH . L 4 HOH A 151 751 103 HOH HOH . L 4 HOH A 152 752 265 HOH HOH . L 4 HOH A 153 753 283 HOH HOH . L 4 HOH A 154 754 188 HOH HOH . L 4 HOH A 155 755 67 HOH HOH . L 4 HOH A 156 756 77 HOH HOH . L 4 HOH A 157 757 24 HOH HOH . L 4 HOH A 158 758 297 HOH HOH . L 4 HOH A 159 759 134 HOH HOH . L 4 HOH A 160 760 229 HOH HOH . L 4 HOH A 161 761 165 HOH HOH . L 4 HOH A 162 762 227 HOH HOH . L 4 HOH A 163 763 108 HOH HOH . L 4 HOH A 164 764 282 HOH HOH . L 4 HOH A 165 765 190 HOH HOH . L 4 HOH A 166 766 291 HOH HOH . L 4 HOH A 167 767 101 HOH HOH . L 4 HOH A 168 768 125 HOH HOH . L 4 HOH A 169 769 75 HOH HOH . L 4 HOH A 170 770 196 HOH HOH . L 4 HOH A 171 771 38 HOH HOH . L 4 HOH A 172 772 9 HOH HOH . L 4 HOH A 173 773 266 HOH HOH . L 4 HOH A 174 774 256 HOH HOH . L 4 HOH A 175 775 195 HOH HOH . L 4 HOH A 176 776 234 HOH HOH . L 4 HOH A 177 777 159 HOH HOH . L 4 HOH A 178 778 244 HOH HOH . L 4 HOH A 179 779 133 HOH HOH . L 4 HOH A 180 780 97 HOH HOH . L 4 HOH A 181 781 18 HOH HOH . L 4 HOH A 182 782 56 HOH HOH . L 4 HOH A 183 783 62 HOH HOH . L 4 HOH A 184 784 115 HOH HOH . L 4 HOH A 185 785 247 HOH HOH . L 4 HOH A 186 786 53 HOH HOH . L 4 HOH A 187 787 55 HOH HOH . L 4 HOH A 188 788 118 HOH HOH . L 4 HOH A 189 789 76 HOH HOH . L 4 HOH A 190 790 276 HOH HOH . L 4 HOH A 191 791 267 HOH HOH . L 4 HOH A 192 792 235 HOH HOH . L 4 HOH A 193 793 131 HOH HOH . L 4 HOH A 194 794 237 HOH HOH . L 4 HOH A 195 795 149 HOH HOH . L 4 HOH A 196 796 92 HOH HOH . L 4 HOH A 197 797 262 HOH HOH . L 4 HOH A 198 798 158 HOH HOH . L 4 HOH A 199 799 203 HOH HOH . L 4 HOH A 200 800 32 HOH HOH . L 4 HOH A 201 801 51 HOH HOH . L 4 HOH A 202 802 180 HOH HOH . L 4 HOH A 203 803 42 HOH HOH . L 4 HOH A 204 804 58 HOH HOH . L 4 HOH A 205 805 253 HOH HOH . L 4 HOH A 206 806 49 HOH HOH . L 4 HOH A 207 807 225 HOH HOH . L 4 HOH A 208 808 274 HOH HOH . L 4 HOH A 209 809 199 HOH HOH . L 4 HOH A 210 810 88 HOH HOH . L 4 HOH A 211 811 273 HOH HOH . L 4 HOH A 212 812 120 HOH HOH . L 4 HOH A 213 813 13 HOH HOH . L 4 HOH A 214 814 112 HOH HOH . L 4 HOH A 215 815 119 HOH HOH . L 4 HOH A 216 816 82 HOH HOH . L 4 HOH A 217 817 114 HOH HOH . L 4 HOH A 218 818 128 HOH HOH . L 4 HOH A 219 819 90 HOH HOH . L 4 HOH A 220 820 26 HOH HOH . L 4 HOH A 221 821 155 HOH HOH . L 4 HOH A 222 822 215 HOH HOH . L 4 HOH A 223 823 208 HOH HOH . L 4 HOH A 224 824 239 HOH HOH . L 4 HOH A 225 825 248 HOH HOH . L 4 HOH A 226 826 106 HOH HOH . L 4 HOH A 227 827 86 HOH HOH . L 4 HOH A 228 828 294 HOH HOH . L 4 HOH A 229 829 107 HOH HOH . L 4 HOH A 230 830 113 HOH HOH . L 4 HOH A 231 831 226 HOH HOH . L 4 HOH A 232 832 85 HOH HOH . L 4 HOH A 233 833 59 HOH HOH . L 4 HOH A 234 834 178 HOH HOH . L 4 HOH A 235 835 206 HOH HOH . L 4 HOH A 236 836 243 HOH HOH . L 4 HOH A 237 837 290 HOH HOH . L 4 HOH A 238 838 16 HOH HOH . L 4 HOH A 239 839 284 HOH HOH . L 4 HOH A 240 840 102 HOH HOH . L 4 HOH A 241 841 264 HOH HOH . L 4 HOH A 242 842 194 HOH HOH . L 4 HOH A 243 843 268 HOH HOH . L 4 HOH A 244 844 231 HOH HOH . L 4 HOH A 245 845 187 HOH HOH . L 4 HOH A 246 846 286 HOH HOH . L 4 HOH A 247 847 288 HOH HOH . L 4 HOH A 248 848 238 HOH HOH . L 4 HOH A 249 849 156 HOH HOH . L 4 HOH A 250 850 280 HOH HOH . L 4 HOH A 251 851 160 HOH HOH . L 4 HOH A 252 852 173 HOH HOH . L 4 HOH A 253 853 254 HOH HOH . L 4 HOH A 254 854 230 HOH HOH . L 4 HOH A 255 855 212 HOH HOH . L 4 HOH A 256 856 163 HOH HOH . L 4 HOH A 257 857 122 HOH HOH . L 4 HOH A 258 858 293 HOH HOH . L 4 HOH A 259 859 145 HOH HOH . L 4 HOH A 260 860 151 HOH HOH . L 4 HOH A 261 861 166 HOH HOH . L 4 HOH A 262 862 202 HOH HOH . L 4 HOH A 263 863 150 HOH HOH . L 4 HOH A 264 864 157 HOH HOH . L 4 HOH A 265 865 170 HOH HOH . L 4 HOH A 266 866 298 HOH HOH . L 4 HOH A 267 867 84 HOH HOH . L 4 HOH A 268 868 69 HOH HOH . L 4 HOH A 269 869 126 HOH HOH . L 4 HOH A 270 870 148 HOH HOH . L 4 HOH A 271 871 205 HOH HOH . L 4 HOH A 272 872 72 HOH HOH . L 4 HOH A 273 873 289 HOH HOH . L 4 HOH A 274 874 275 HOH HOH . L 4 HOH A 275 875 78 HOH HOH . L 4 HOH A 276 876 271 HOH HOH . L 4 HOH A 277 877 183 HOH HOH . L 4 HOH A 278 878 207 HOH HOH . L 4 HOH A 279 879 152 HOH HOH . L 4 HOH A 280 880 162 HOH HOH . L 4 HOH A 281 881 192 HOH HOH . L 4 HOH A 282 882 153 HOH HOH . L 4 HOH A 283 883 147 HOH HOH . L 4 HOH A 284 884 201 HOH HOH . L 4 HOH A 285 885 161 HOH HOH . L 4 HOH A 286 886 99 HOH HOH . L 4 HOH A 287 887 287 HOH HOH . L 4 HOH A 288 888 123 HOH HOH . L 4 HOH A 289 889 50 HOH HOH . L 4 HOH A 290 890 219 HOH HOH . L 4 HOH A 291 891 217 HOH HOH . L 4 HOH A 292 892 61 HOH HOH . L 4 HOH A 293 893 179 HOH HOH . L 4 HOH A 294 894 220 HOH HOH . L 4 HOH A 295 895 272 HOH HOH . L 4 HOH A 296 896 171 HOH HOH . L 4 HOH A 297 897 45 HOH HOH . L 4 HOH A 298 898 216 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . J 3 49.664 2.814 38.909 1 52.23 ? C1 EDO 509 A 1 HETATM 2 O O1 EDO . . . J 3 50.046 3.946 38.115 1 60.92 ? O1 EDO 509 A 1 HETATM 3 C C2 EDO . . . J 3 49.569 1.587 38 1 45.53 ? C2 EDO 509 A 1 HETATM 4 O O2 EDO . . . J 3 49.084 1.988 36.71 1 32.77 ? O2 EDO 509 A 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 301 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 4 #