data_5JIM # _model_server_result.job_id kJci6SFRGUXXxMUppOcqFQ _model_server_result.datetime_utc '2024-11-24 17:04:22' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5jim # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":202}' # _entry.id 5JIM # _exptl.entry_id 5JIM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5JIM _cell.length_a 43.146 _cell.length_b 85.413 _cell.length_c 64.121 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5JIM _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G 1 1 A,B,C,D,E,F,G 1 2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 C S1 P8S . A P8S 201 1_555 C S1 P8S . A P8S 201 2_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.162 ? metalc ? metalc1 B O ASP 99 B ASP 99 1_555 E NA NA . B NA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.172 ? metalc ? metalc2 E NA NA . B NA 202 1_555 G O HOH . B HOH 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.492 ? metalc ? metalc3 E NA NA . B NA 202 1_555 G O HOH . B HOH 310 4_456 ? ? ? ? ? ? ? ? ? ? ? ? 2.202 ? metalc ? metalc4 E NA NA . B NA 202 1_555 G O HOH . B HOH 370 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.3 ? metalc ? metalc5 E NA NA . B NA 202 1_555 G O HOH . B HOH 390 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.443 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5JIM _atom_sites.fract_transf_matrix[1][1] 0.023177 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011708 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015596 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 P8S A 1 201 2 P8S P8S . D 2 P8S B 1 201 1 P8S P8S . E 3 NA B 1 202 1 NA NA . F 4 HOH A 1 301 179 HOH HOH . F 4 HOH A 2 302 1 HOH HOH . F 4 HOH A 3 303 208 HOH HOH . F 4 HOH A 4 304 143 HOH HOH . F 4 HOH A 5 305 99 HOH HOH . F 4 HOH A 6 306 2 HOH HOH . F 4 HOH A 7 307 118 HOH HOH . F 4 HOH A 8 308 138 HOH HOH . F 4 HOH A 9 309 53 HOH HOH . F 4 HOH A 10 310 135 HOH HOH . F 4 HOH A 11 311 134 HOH HOH . F 4 HOH A 12 312 67 HOH HOH . F 4 HOH A 13 313 207 HOH HOH . F 4 HOH A 14 314 141 HOH HOH . F 4 HOH A 15 315 201 HOH HOH . F 4 HOH A 16 316 120 HOH HOH . F 4 HOH A 17 317 107 HOH HOH . F 4 HOH A 18 318 197 HOH HOH . F 4 HOH A 19 319 137 HOH HOH . F 4 HOH A 20 320 65 HOH HOH . F 4 HOH A 21 321 12 HOH HOH . F 4 HOH A 22 322 63 HOH HOH . F 4 HOH A 23 323 4 HOH HOH . F 4 HOH A 24 324 73 HOH HOH . F 4 HOH A 25 325 15 HOH HOH . F 4 HOH A 26 326 71 HOH HOH . F 4 HOH A 27 327 7 HOH HOH . F 4 HOH A 28 328 14 HOH HOH . F 4 HOH A 29 329 47 HOH HOH . F 4 HOH A 30 330 38 HOH HOH . F 4 HOH A 31 331 168 HOH HOH . F 4 HOH A 32 332 94 HOH HOH . F 4 HOH A 33 333 126 HOH HOH . F 4 HOH A 34 334 117 HOH HOH . F 4 HOH A 35 335 31 HOH HOH . F 4 HOH A 36 336 9 HOH HOH . F 4 HOH A 37 337 13 HOH HOH . F 4 HOH A 38 338 140 HOH HOH . F 4 HOH A 39 339 45 HOH HOH . F 4 HOH A 40 340 111 HOH HOH . F 4 HOH A 41 341 37 HOH HOH . F 4 HOH A 42 342 161 HOH HOH . F 4 HOH A 43 343 195 HOH HOH . F 4 HOH A 44 344 69 HOH HOH . F 4 HOH A 45 345 26 HOH HOH . F 4 HOH A 46 346 29 HOH HOH . F 4 HOH A 47 347 184 HOH HOH . F 4 HOH A 48 348 155 HOH HOH . F 4 HOH A 49 349 42 HOH HOH . F 4 HOH A 50 350 167 HOH HOH . F 4 HOH A 51 351 200 HOH HOH . F 4 HOH A 52 352 59 HOH HOH . F 4 HOH A 53 353 36 HOH HOH . F 4 HOH A 54 354 81 HOH HOH . F 4 HOH A 55 355 93 HOH HOH . F 4 HOH A 56 356 185 HOH HOH . F 4 HOH A 57 357 3 HOH HOH . F 4 HOH A 58 358 156 HOH HOH . F 4 HOH A 59 359 103 HOH HOH . F 4 HOH A 60 360 102 HOH HOH . F 4 HOH A 61 361 100 HOH HOH . F 4 HOH A 62 362 204 HOH HOH . F 4 HOH A 63 363 27 HOH HOH . F 4 HOH A 64 364 77 HOH HOH . F 4 HOH A 65 365 189 HOH HOH . F 4 HOH A 66 366 19 HOH HOH . F 4 HOH A 67 367 66 HOH HOH . F 4 HOH A 68 368 178 HOH HOH . F 4 HOH A 69 369 49 HOH HOH . F 4 HOH A 70 370 104 HOH HOH . F 4 HOH A 71 371 192 HOH HOH . F 4 HOH A 72 372 183 HOH HOH . F 4 HOH A 73 373 124 HOH HOH . F 4 HOH A 74 374 186 HOH HOH . F 4 HOH A 75 375 58 HOH HOH . F 4 HOH A 76 376 147 HOH HOH . F 4 HOH A 77 377 119 HOH HOH . F 4 HOH A 78 378 188 HOH HOH . F 4 HOH A 79 379 57 HOH HOH . F 4 HOH A 80 380 144 HOH HOH . F 4 HOH A 81 381 191 HOH HOH . F 4 HOH A 82 382 128 HOH HOH . F 4 HOH A 83 383 132 HOH HOH . F 4 HOH A 84 384 127 HOH HOH . F 4 HOH A 85 385 149 HOH HOH . F 4 HOH A 86 386 101 HOH HOH . F 4 HOH A 87 387 21 HOH HOH . F 4 HOH A 88 388 80 HOH HOH . F 4 HOH A 89 389 166 HOH HOH . F 4 HOH A 90 390 133 HOH HOH . F 4 HOH A 91 391 142 HOH HOH . F 4 HOH A 92 392 109 HOH HOH . F 4 HOH A 93 393 97 HOH HOH . F 4 HOH A 94 394 123 HOH HOH . F 4 HOH A 95 395 171 HOH HOH . F 4 HOH A 96 396 203 HOH HOH . G 4 HOH B 1 301 61 HOH HOH . G 4 HOH B 2 302 165 HOH HOH . G 4 HOH B 3 303 157 HOH HOH . G 4 HOH B 4 304 162 HOH HOH . G 4 HOH B 5 305 114 HOH HOH . G 4 HOH B 6 306 131 HOH HOH . G 4 HOH B 7 307 95 HOH HOH . G 4 HOH B 8 308 64 HOH HOH . G 4 HOH B 9 309 150 HOH HOH . G 4 HOH B 10 310 209 HOH HOH . G 4 HOH B 11 311 113 HOH HOH . G 4 HOH B 12 312 28 HOH HOH . G 4 HOH B 13 313 75 HOH HOH . G 4 HOH B 14 314 110 HOH HOH . G 4 HOH B 15 315 34 HOH HOH . G 4 HOH B 16 316 76 HOH HOH . G 4 HOH B 17 317 190 HOH HOH . G 4 HOH B 18 318 105 HOH HOH . G 4 HOH B 19 319 130 HOH HOH . G 4 HOH B 20 320 79 HOH HOH . G 4 HOH B 21 321 180 HOH HOH . G 4 HOH B 22 322 146 HOH HOH . G 4 HOH B 23 323 172 HOH HOH . G 4 HOH B 24 324 41 HOH HOH . G 4 HOH B 25 325 44 HOH HOH . G 4 HOH B 26 326 39 HOH HOH . G 4 HOH B 27 327 33 HOH HOH . G 4 HOH B 28 328 10 HOH HOH . G 4 HOH B 29 329 89 HOH HOH . G 4 HOH B 30 330 56 HOH HOH . G 4 HOH B 31 331 5 HOH HOH . G 4 HOH B 32 332 62 HOH HOH . G 4 HOH B 33 333 136 HOH HOH . G 4 HOH B 34 334 159 HOH HOH . G 4 HOH B 35 335 20 HOH HOH . G 4 HOH B 36 336 68 HOH HOH . G 4 HOH B 37 337 88 HOH HOH . G 4 HOH B 38 338 199 HOH HOH . G 4 HOH B 39 339 32 HOH HOH . G 4 HOH B 40 340 51 HOH HOH . G 4 HOH B 41 341 177 HOH HOH . G 4 HOH B 42 342 11 HOH HOH . G 4 HOH B 43 343 6 HOH HOH . G 4 HOH B 44 344 18 HOH HOH . G 4 HOH B 45 345 35 HOH HOH . G 4 HOH B 46 346 92 HOH HOH . G 4 HOH B 47 347 170 HOH HOH . G 4 HOH B 48 348 16 HOH HOH . G 4 HOH B 49 349 54 HOH HOH . G 4 HOH B 50 350 46 HOH HOH . G 4 HOH B 51 351 152 HOH HOH . G 4 HOH B 52 352 30 HOH HOH . G 4 HOH B 53 353 169 HOH HOH . G 4 HOH B 54 354 8 HOH HOH . G 4 HOH B 55 355 82 HOH HOH . G 4 HOH B 56 356 145 HOH HOH . G 4 HOH B 57 357 24 HOH HOH . G 4 HOH B 58 358 50 HOH HOH . G 4 HOH B 59 359 22 HOH HOH . G 4 HOH B 60 360 112 HOH HOH . G 4 HOH B 61 361 70 HOH HOH . G 4 HOH B 62 362 187 HOH HOH . G 4 HOH B 63 363 52 HOH HOH . G 4 HOH B 64 364 139 HOH HOH . G 4 HOH B 65 365 174 HOH HOH . G 4 HOH B 66 366 115 HOH HOH . G 4 HOH B 67 367 148 HOH HOH . G 4 HOH B 68 368 181 HOH HOH . G 4 HOH B 69 369 108 HOH HOH . G 4 HOH B 70 370 164 HOH HOH . G 4 HOH B 71 371 23 HOH HOH . G 4 HOH B 72 372 91 HOH HOH . G 4 HOH B 73 373 158 HOH HOH . G 4 HOH B 74 374 196 HOH HOH . G 4 HOH B 75 375 83 HOH HOH . G 4 HOH B 76 376 175 HOH HOH . G 4 HOH B 77 377 106 HOH HOH . G 4 HOH B 78 378 17 HOH HOH . G 4 HOH B 79 379 85 HOH HOH . G 4 HOH B 80 380 72 HOH HOH . G 4 HOH B 81 381 206 HOH HOH . G 4 HOH B 82 382 25 HOH HOH . G 4 HOH B 83 383 43 HOH HOH . G 4 HOH B 84 384 182 HOH HOH . G 4 HOH B 85 385 48 HOH HOH . G 4 HOH B 86 386 78 HOH HOH . G 4 HOH B 87 387 116 HOH HOH . G 4 HOH B 88 388 98 HOH HOH . G 4 HOH B 89 389 163 HOH HOH . G 4 HOH B 90 390 122 HOH HOH . G 4 HOH B 91 391 86 HOH HOH . G 4 HOH B 92 392 84 HOH HOH . G 4 HOH B 93 393 96 HOH HOH . G 4 HOH B 94 394 40 HOH HOH . G 4 HOH B 95 395 151 HOH HOH . G 4 HOH B 96 396 160 HOH HOH . G 4 HOH B 97 397 87 HOH HOH . G 4 HOH B 98 398 154 HOH HOH . G 4 HOH B 99 399 74 HOH HOH . G 4 HOH B 100 400 55 HOH HOH . G 4 HOH B 101 401 90 HOH HOH . G 4 HOH B 102 402 193 HOH HOH . G 4 HOH B 103 403 153 HOH HOH . G 4 HOH B 104 404 173 HOH HOH . G 4 HOH B 105 405 176 HOH HOH . G 4 HOH B 106 406 202 HOH HOH . G 4 HOH B 107 407 125 HOH HOH . G 4 HOH B 108 408 60 HOH HOH . G 4 HOH B 109 409 194 HOH HOH . G 4 HOH B 110 410 121 HOH HOH . G 4 HOH B 111 411 198 HOH HOH . G 4 HOH B 112 412 205 HOH HOH . G 4 HOH B 113 413 129 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id E _atom_site.label_entity_id 3 _atom_site.Cartn_x -22.421 _atom_site.Cartn_y 17.451 _atom_site.Cartn_z 27.667 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 82.85 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 202 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 277 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #