data_5JIQ
#
_model_server_result.job_id            zzBARYEYNrVTI_VY87TrYQ 
_model_server_result.datetime_utc      '2024-10-14 04:23:24' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5jiq 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":202}' 
#
_entry.id    5JIQ 
#
_exptl.entry_id    5JIQ 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              22.99 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'SODIUM ION' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5JIQ 
_cell.length_a            42.943 
_cell.length_b            85.497 
_cell.length_c            64.191 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5JIQ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        18 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D,E,F,G,H 1 1 
A,B,C,D,E,F,G,H 1 2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A O ASP 99 A ASP 99 1_555 D NA NA . A NA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.284 ? 
metalc ? metalc2 D NA NA . A NA 202 1_555 G O HOH . A HOH 305 4_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.325 ? 
metalc ? metalc3 D NA NA . A NA 202 1_555 G O HOH . A HOH 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.528 ? 
metalc ? metalc4 D NA NA . A NA 202 1_555 G O HOH . A HOH 368 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.297 ? 
#
_chem_comp.formula           'Na 1' 
_chem_comp.formula_weight    22.99 
_chem_comp.id                NA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'SODIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     5JIQ 
_atom_sites.fract_transf_matrix[1][1]    0.023287 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011696 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.015579 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 27M A 1 201 1 27M 27M . 
D 3 NA A 1 202 1 NA NA . 
E 2 27M B 1 201 2 27M 27M . 
F 4 GOL B 1 202 1 GOL GOL . 
G 5 HOH A 1 301 233 HOH HOH . 
G 5 HOH A 2 302 281 HOH HOH . 
G 5 HOH A 3 303 59 HOH HOH . 
G 5 HOH A 4 304 232 HOH HOH . 
G 5 HOH A 5 305 57 HOH HOH . 
G 5 HOH A 6 306 149 HOH HOH . 
G 5 HOH A 7 307 38 HOH HOH . 
G 5 HOH A 8 308 201 HOH HOH . 
G 5 HOH A 9 309 278 HOH HOH . 
G 5 HOH A 10 310 69 HOH HOH . 
G 5 HOH A 11 311 84 HOH HOH . 
G 5 HOH A 12 312 62 HOH HOH . 
G 5 HOH A 13 313 179 HOH HOH . 
G 5 HOH A 14 314 271 HOH HOH . 
G 5 HOH A 15 315 49 HOH HOH . 
G 5 HOH A 16 316 11 HOH HOH . 
G 5 HOH A 17 317 251 HOH HOH . 
G 5 HOH A 18 318 240 HOH HOH . 
G 5 HOH A 19 319 156 HOH HOH . 
G 5 HOH A 20 320 212 HOH HOH . 
G 5 HOH A 21 321 249 HOH HOH . 
G 5 HOH A 22 322 39 HOH HOH . 
G 5 HOH A 23 323 43 HOH HOH . 
G 5 HOH A 24 324 227 HOH HOH . 
G 5 HOH A 25 325 17 HOH HOH . 
G 5 HOH A 26 326 29 HOH HOH . 
G 5 HOH A 27 327 180 HOH HOH . 
G 5 HOH A 28 328 263 HOH HOH . 
G 5 HOH A 29 329 41 HOH HOH . 
G 5 HOH A 30 330 177 HOH HOH . 
G 5 HOH A 31 331 142 HOH HOH . 
G 5 HOH A 32 332 15 HOH HOH . 
G 5 HOH A 33 333 101 HOH HOH . 
G 5 HOH A 34 334 188 HOH HOH . 
G 5 HOH A 35 335 136 HOH HOH . 
G 5 HOH A 36 336 160 HOH HOH . 
G 5 HOH A 37 337 130 HOH HOH . 
G 5 HOH A 38 338 1 HOH HOH . 
G 5 HOH A 39 339 33 HOH HOH . 
G 5 HOH A 40 340 87 HOH HOH . 
G 5 HOH A 41 341 105 HOH HOH . 
G 5 HOH A 42 342 250 HOH HOH . 
G 5 HOH A 43 343 47 HOH HOH . 
G 5 HOH A 44 344 217 HOH HOH . 
G 5 HOH A 45 345 108 HOH HOH . 
G 5 HOH A 46 346 8 HOH HOH . 
G 5 HOH A 47 347 5 HOH HOH . 
G 5 HOH A 48 348 174 HOH HOH . 
G 5 HOH A 49 349 223 HOH HOH . 
G 5 HOH A 50 350 16 HOH HOH . 
G 5 HOH A 51 351 269 HOH HOH . 
G 5 HOH A 52 352 37 HOH HOH . 
G 5 HOH A 53 353 275 HOH HOH . 
G 5 HOH A 54 354 267 HOH HOH . 
G 5 HOH A 55 355 31 HOH HOH . 
G 5 HOH A 56 356 4 HOH HOH . 
G 5 HOH A 57 357 274 HOH HOH . 
G 5 HOH A 58 358 20 HOH HOH . 
G 5 HOH A 59 359 133 HOH HOH . 
G 5 HOH A 60 360 197 HOH HOH . 
G 5 HOH A 61 361 127 HOH HOH . 
G 5 HOH A 62 362 7 HOH HOH . 
G 5 HOH A 63 363 95 HOH HOH . 
G 5 HOH A 64 364 162 HOH HOH . 
G 5 HOH A 65 365 123 HOH HOH . 
G 5 HOH A 66 366 22 HOH HOH . 
G 5 HOH A 67 367 264 HOH HOH . 
G 5 HOH A 68 368 110 HOH HOH . 
G 5 HOH A 69 369 102 HOH HOH . 
G 5 HOH A 70 370 25 HOH HOH . 
G 5 HOH A 71 371 153 HOH HOH . 
G 5 HOH A 72 372 30 HOH HOH . 
G 5 HOH A 73 373 12 HOH HOH . 
G 5 HOH A 74 374 58 HOH HOH . 
G 5 HOH A 75 375 126 HOH HOH . 
G 5 HOH A 76 376 65 HOH HOH . 
G 5 HOH A 77 377 163 HOH HOH . 
G 5 HOH A 78 378 50 HOH HOH . 
G 5 HOH A 79 379 276 HOH HOH . 
G 5 HOH A 80 380 144 HOH HOH . 
G 5 HOH A 81 381 141 HOH HOH . 
G 5 HOH A 82 382 286 HOH HOH . 
G 5 HOH A 83 383 32 HOH HOH . 
G 5 HOH A 84 384 244 HOH HOH . 
G 5 HOH A 85 385 165 HOH HOH . 
G 5 HOH A 86 386 129 HOH HOH . 
G 5 HOH A 87 387 154 HOH HOH . 
G 5 HOH A 88 388 48 HOH HOH . 
G 5 HOH A 89 389 75 HOH HOH . 
G 5 HOH A 90 390 52 HOH HOH . 
G 5 HOH A 91 391 131 HOH HOH . 
G 5 HOH A 92 392 185 HOH HOH . 
G 5 HOH A 93 393 67 HOH HOH . 
G 5 HOH A 94 394 77 HOH HOH . 
G 5 HOH A 95 395 239 HOH HOH . 
G 5 HOH A 96 396 145 HOH HOH . 
G 5 HOH A 97 397 137 HOH HOH . 
G 5 HOH A 98 398 172 HOH HOH . 
G 5 HOH A 99 399 146 HOH HOH . 
G 5 HOH A 100 400 76 HOH HOH . 
G 5 HOH A 101 401 71 HOH HOH . 
G 5 HOH A 102 402 115 HOH HOH . 
G 5 HOH A 103 403 199 HOH HOH . 
G 5 HOH A 104 404 42 HOH HOH . 
G 5 HOH A 105 405 90 HOH HOH . 
G 5 HOH A 106 406 285 HOH HOH . 
G 5 HOH A 107 407 187 HOH HOH . 
G 5 HOH A 108 408 46 HOH HOH . 
G 5 HOH A 109 409 245 HOH HOH . 
G 5 HOH A 110 410 175 HOH HOH . 
G 5 HOH A 111 411 237 HOH HOH . 
G 5 HOH A 112 412 167 HOH HOH . 
G 5 HOH A 113 413 195 HOH HOH . 
G 5 HOH A 114 414 266 HOH HOH . 
G 5 HOH A 115 415 272 HOH HOH . 
G 5 HOH A 116 416 135 HOH HOH . 
G 5 HOH A 117 417 265 HOH HOH . 
G 5 HOH A 118 418 200 HOH HOH . 
G 5 HOH A 119 419 183 HOH HOH . 
G 5 HOH A 120 420 198 HOH HOH . 
G 5 HOH A 121 421 186 HOH HOH . 
H 5 HOH B 1 301 202 HOH HOH . 
H 5 HOH B 2 302 70 HOH HOH . 
H 5 HOH B 3 303 192 HOH HOH . 
H 5 HOH B 4 304 74 HOH HOH . 
H 5 HOH B 5 305 191 HOH HOH . 
H 5 HOH B 6 306 284 HOH HOH . 
H 5 HOH B 7 307 53 HOH HOH . 
H 5 HOH B 8 308 257 HOH HOH . 
H 5 HOH B 9 309 204 HOH HOH . 
H 5 HOH B 10 310 109 HOH HOH . 
H 5 HOH B 11 311 224 HOH HOH . 
H 5 HOH B 12 312 56 HOH HOH . 
H 5 HOH B 13 313 173 HOH HOH . 
H 5 HOH B 14 314 61 HOH HOH . 
H 5 HOH B 15 315 28 HOH HOH . 
H 5 HOH B 16 316 91 HOH HOH . 
H 5 HOH B 17 317 26 HOH HOH . 
H 5 HOH B 18 318 171 HOH HOH . 
H 5 HOH B 19 319 96 HOH HOH . 
H 5 HOH B 20 320 143 HOH HOH . 
H 5 HOH B 21 321 86 HOH HOH . 
H 5 HOH B 22 322 44 HOH HOH . 
H 5 HOH B 23 323 193 HOH HOH . 
H 5 HOH B 24 324 125 HOH HOH . 
H 5 HOH B 25 325 3 HOH HOH . 
H 5 HOH B 26 326 259 HOH HOH . 
H 5 HOH B 27 327 23 HOH HOH . 
H 5 HOH B 28 328 79 HOH HOH . 
H 5 HOH B 29 329 10 HOH HOH . 
H 5 HOH B 30 330 116 HOH HOH . 
H 5 HOH B 31 331 6 HOH HOH . 
H 5 HOH B 32 332 21 HOH HOH . 
H 5 HOH B 33 333 9 HOH HOH . 
H 5 HOH B 34 334 279 HOH HOH . 
H 5 HOH B 35 335 81 HOH HOH . 
H 5 HOH B 36 336 2 HOH HOH . 
H 5 HOH B 37 337 205 HOH HOH . 
H 5 HOH B 38 338 27 HOH HOH . 
H 5 HOH B 39 339 236 HOH HOH . 
H 5 HOH B 40 340 88 HOH HOH . 
H 5 HOH B 41 341 114 HOH HOH . 
H 5 HOH B 42 342 94 HOH HOH . 
H 5 HOH B 43 343 99 HOH HOH . 
H 5 HOH B 44 344 151 HOH HOH . 
H 5 HOH B 45 345 35 HOH HOH . 
H 5 HOH B 46 346 134 HOH HOH . 
H 5 HOH B 47 347 148 HOH HOH . 
H 5 HOH B 48 348 45 HOH HOH . 
H 5 HOH B 49 349 18 HOH HOH . 
H 5 HOH B 50 350 34 HOH HOH . 
H 5 HOH B 51 351 270 HOH HOH . 
H 5 HOH B 52 352 103 HOH HOH . 
H 5 HOH B 53 353 206 HOH HOH . 
H 5 HOH B 54 354 40 HOH HOH . 
H 5 HOH B 55 355 150 HOH HOH . 
H 5 HOH B 56 356 80 HOH HOH . 
H 5 HOH B 57 357 63 HOH HOH . 
H 5 HOH B 58 358 92 HOH HOH . 
H 5 HOH B 59 359 78 HOH HOH . 
H 5 HOH B 60 360 247 HOH HOH . 
H 5 HOH B 61 361 104 HOH HOH . 
H 5 HOH B 62 362 277 HOH HOH . 
H 5 HOH B 63 363 184 HOH HOH . 
H 5 HOH B 64 364 72 HOH HOH . 
H 5 HOH B 65 365 210 HOH HOH . 
H 5 HOH B 66 366 83 HOH HOH . 
H 5 HOH B 67 367 118 HOH HOH . 
H 5 HOH B 68 368 112 HOH HOH . 
H 5 HOH B 69 369 14 HOH HOH . 
H 5 HOH B 70 370 234 HOH HOH . 
H 5 HOH B 71 371 139 HOH HOH . 
H 5 HOH B 72 372 124 HOH HOH . 
H 5 HOH B 73 373 119 HOH HOH . 
H 5 HOH B 74 374 68 HOH HOH . 
H 5 HOH B 75 375 121 HOH HOH . 
H 5 HOH B 76 376 235 HOH HOH . 
H 5 HOH B 77 377 97 HOH HOH . 
H 5 HOH B 78 378 85 HOH HOH . 
H 5 HOH B 79 379 128 HOH HOH . 
H 5 HOH B 80 380 260 HOH HOH . 
H 5 HOH B 81 381 229 HOH HOH . 
H 5 HOH B 82 382 93 HOH HOH . 
H 5 HOH B 83 383 106 HOH HOH . 
H 5 HOH B 84 384 220 HOH HOH . 
H 5 HOH B 85 385 178 HOH HOH . 
H 5 HOH B 86 386 120 HOH HOH . 
H 5 HOH B 87 387 273 HOH HOH . 
H 5 HOH B 88 388 168 HOH HOH . 
H 5 HOH B 89 389 222 HOH HOH . 
H 5 HOH B 90 390 138 HOH HOH . 
H 5 HOH B 91 391 231 HOH HOH . 
H 5 HOH B 92 392 98 HOH HOH . 
H 5 HOH B 93 393 166 HOH HOH . 
H 5 HOH B 94 394 221 HOH HOH . 
H 5 HOH B 95 395 258 HOH HOH . 
H 5 HOH B 96 396 164 HOH HOH . 
H 5 HOH B 97 397 213 HOH HOH . 
H 5 HOH B 98 398 241 HOH HOH . 
H 5 HOH B 99 399 283 HOH HOH . 
H 5 HOH B 100 400 248 HOH HOH . 
H 5 HOH B 101 401 261 HOH HOH . 
H 5 HOH B 102 402 66 HOH HOH . 
H 5 HOH B 103 403 132 HOH HOH . 
H 5 HOH B 104 404 243 HOH HOH . 
H 5 HOH B 105 405 214 HOH HOH . 
H 5 HOH B 106 406 225 HOH HOH . 
H 5 HOH B 107 407 226 HOH HOH . 
H 5 HOH B 108 408 242 HOH HOH . 
H 5 HOH B 109 409 24 HOH HOH . 
H 5 HOH B 110 410 228 HOH HOH . 
H 5 HOH B 111 411 215 HOH HOH . 
H 5 HOH B 112 412 218 HOH HOH . 
H 5 HOH B 113 413 246 HOH HOH . 
H 5 HOH B 114 414 55 HOH HOH . 
H 5 HOH B 115 415 219 HOH HOH . 
H 5 HOH B 116 416 280 HOH HOH . 
H 5 HOH B 117 417 216 HOH HOH . 
H 5 HOH B 118 418 282 HOH HOH . 
H 5 HOH B 119 419 170 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           NA 
_atom_site.label_atom_id         NA 
_atom_site.label_comp_id         NA 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         D 
_atom_site.label_entity_id       3 
_atom_site.Cartn_x               22.878 
_atom_site.Cartn_y               17.448 
_atom_site.Cartn_z               4.355 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        69.89 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          NA 
_atom_site.auth_comp_id          NA 
_atom_site.auth_seq_id           202 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              14 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    14 
_model_server_stats.query_time_ms           323 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           1 
#