data_5JIX
#
_model_server_result.job_id            Gewn-8VntsgugJS0oDjTdg 
_model_server_result.datetime_utc      '2024-11-16 13:31:44' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5jix 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"J","auth_seq_id":509}' 
#
_entry.id    5JIX 
#
_exptl.entry_id    5JIX 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    5 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5JIX 
_cell.length_a            41.62 
_cell.length_b            52.09 
_cell.length_c            68.64 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5JIX 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 F N N 
? 3 G N N 
? 3 H N N 
? 3 I N N 
? 3 J N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OH TYR 41 A TYR 307 1_555 M NA NA . A NA 512 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.768 ? 
metalc ? metalc2 A O ILE 47 A ILE 313 1_555 M NA NA . A NA 512 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.735 ? 
metalc ? metalc3 A O THR 82 A THR 348 1_555 B CA CA . A CA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.407 ? 
metalc ? metalc4 A OE1 GLU 129 A GLU 395 1_555 E CA CA . A CA 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.312 ? 
metalc ? metalc5 A OE1 GLN 132 A GLN 398 1_555 E CA CA . A CA 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.451 ? 
metalc ? metalc6 B CA CA . A CA 501 1_555 N O HOH . A HOH 617 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.415 ? 
metalc ? metalc7 B CA CA . A CA 501 1_555 N O HOH . A HOH 629 2_455 ? ? ? ? ? ? ? ? ? ? ? ? 2.442 ? 
metalc ? metalc8 B CA CA . A CA 501 1_555 N O HOH . A HOH 639 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.401 ? 
metalc ? metalc9 B CA CA . A CA 501 1_555 N O HOH . A HOH 665 2_455 ? ? ? ? ? ? ? ? ? ? ? ? 2.556 ? 
metalc ? metalc10 B CA CA . A CA 501 1_555 N O HOH . A HOH 700 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.289 ? 
metalc ? metalc11 B CA CA . A CA 501 1_555 N O HOH . A HOH 712 2_455 ? ? ? ? ? ? ? ? ? ? ? ? 2.346 ? 
metalc ? metalc12 C CA CA . A CA 502 1_555 N O HOH . A HOH 718 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.927 ? 
metalc ? metalc13 D CA CA . A CA 503 1_555 N O HOH . A HOH 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.994 ? 
metalc ? metalc14 D CA CA . A CA 503 1_555 N O HOH . A HOH 607 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.452 ? 
metalc ? metalc15 D CA CA . A CA 503 1_555 N O HOH . A HOH 611 3_444 ? ? ? ? ? ? ? ? ? ? ? ? 2.48 ? 
metalc ? metalc16 D CA CA . A CA 503 1_555 N O HOH . A HOH 682 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.54 ? 
metalc ? metalc17 D CA CA . A CA 503 1_555 N O HOH . A HOH 686 3_444 ? ? ? ? ? ? ? ? ? ? ? ? 2.368 ? 
metalc ? metalc18 D CA CA . A CA 503 1_555 N O HOH . A HOH 711 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.32 ? 
metalc ? metalc19 E CA CA . A CA 504 1_555 I O2 EDO . A EDO 508 3_444 ? ? ? ? ? ? ? ? ? ? ? ? 2.429 ? 
metalc ? metalc20 E CA CA . A CA 504 1_555 I O1 EDO . A EDO 508 3_444 ? ? ? ? ? ? ? ? ? ? ? ? 2.445 ? 
metalc ? metalc21 E CA CA . A CA 504 1_555 N O HOH . A HOH 636 3_444 ? ? ? ? ? ? ? ? ? ? ? ? 2.393 ? 
metalc ? metalc22 E CA CA . A CA 504 1_555 N O HOH . A HOH 657 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.32 ? 
metalc ? metalc23 E CA CA . A CA 504 1_555 N O HOH . A HOH 667 3_444 ? ? ? ? ? ? ? ? ? ? ? ? 2.316 ? 
metalc ? metalc24 M NA NA . A NA 512 1_555 N O HOH . A HOH 606 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.915 ? 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 121 n n 
C1 C2 EDO sing 122 n n 
C1 H11 EDO sing 123 n n 
C1 H12 EDO sing 124 n n 
O1 HO1 EDO sing 125 n n 
C2 O2 EDO sing 126 n n 
C2 H21 EDO sing 127 n n 
C2 H22 EDO sing 128 n n 
O2 HO2 EDO sing 129 n n 
#
_atom_sites.entry_id                     5JIX 
_atom_sites.fract_transf_matrix[1][1]    0.024027 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.019198 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.014569 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 CA A 1 501 8 CA CA . 
C 2 CA A 1 502 9 CA CA . 
D 2 CA A 1 503 10 CA CA . 
E 2 CA A 1 504 11 CA CA . 
F 3 EDO A 1 505 1 EDO EDO . 
G 3 EDO A 1 506 2 EDO EDO . 
H 3 EDO A 1 507 3 EDO EDO . 
I 3 EDO A 1 508 4 EDO EDO . 
J 3 EDO A 1 509 5 EDO EDO . 
K 4 PE5 A 1 510 1 PE5 PE5 . 
L 5 6J7 A 1 511 1 6J7 8br . 
M 6 NA A 1 512 1 NA NA . 
N 7 HOH A 1 601 125 HOH HOH . 
N 7 HOH A 2 602 75 HOH HOH . 
N 7 HOH A 3 603 88 HOH HOH . 
N 7 HOH A 4 604 35 HOH HOH . 
N 7 HOH A 5 605 46 HOH HOH . 
N 7 HOH A 6 606 28 HOH HOH . 
N 7 HOH A 7 607 17 HOH HOH . 
N 7 HOH A 8 608 41 HOH HOH . 
N 7 HOH A 9 609 3 HOH HOH . 
N 7 HOH A 10 610 116 HOH HOH . 
N 7 HOH A 11 611 24 HOH HOH . 
N 7 HOH A 12 612 72 HOH HOH . 
N 7 HOH A 13 613 13 HOH HOH . 
N 7 HOH A 14 614 45 HOH HOH . 
N 7 HOH A 15 615 22 HOH HOH . 
N 7 HOH A 16 616 54 HOH HOH . 
N 7 HOH A 17 617 21 HOH HOH . 
N 7 HOH A 18 618 111 HOH HOH . 
N 7 HOH A 19 619 7 HOH HOH . 
N 7 HOH A 20 620 58 HOH HOH . 
N 7 HOH A 21 621 79 HOH HOH . 
N 7 HOH A 22 622 105 HOH HOH . 
N 7 HOH A 23 623 67 HOH HOH . 
N 7 HOH A 24 624 12 HOH HOH . 
N 7 HOH A 25 625 81 HOH HOH . 
N 7 HOH A 26 626 29 HOH HOH . 
N 7 HOH A 27 627 107 HOH HOH . 
N 7 HOH A 28 628 85 HOH HOH . 
N 7 HOH A 29 629 42 HOH HOH . 
N 7 HOH A 30 630 49 HOH HOH . 
N 7 HOH A 31 631 56 HOH HOH . 
N 7 HOH A 32 632 60 HOH HOH . 
N 7 HOH A 33 633 37 HOH HOH . 
N 7 HOH A 34 634 47 HOH HOH . 
N 7 HOH A 35 635 1 HOH HOH . 
N 7 HOH A 36 636 4 HOH HOH . 
N 7 HOH A 37 637 5 HOH HOH . 
N 7 HOH A 38 638 73 HOH HOH . 
N 7 HOH A 39 639 19 HOH HOH . 
N 7 HOH A 40 640 20 HOH HOH . 
N 7 HOH A 41 641 23 HOH HOH . 
N 7 HOH A 42 642 55 HOH HOH . 
N 7 HOH A 43 643 2 HOH HOH . 
N 7 HOH A 44 644 89 HOH HOH . 
N 7 HOH A 45 645 77 HOH HOH . 
N 7 HOH A 46 646 44 HOH HOH . 
N 7 HOH A 47 647 61 HOH HOH . 
N 7 HOH A 48 648 10 HOH HOH . 
N 7 HOH A 49 649 36 HOH HOH . 
N 7 HOH A 50 650 27 HOH HOH . 
N 7 HOH A 51 651 39 HOH HOH . 
N 7 HOH A 52 652 70 HOH HOH . 
N 7 HOH A 53 653 126 HOH HOH . 
N 7 HOH A 54 654 43 HOH HOH . 
N 7 HOH A 55 655 83 HOH HOH . 
N 7 HOH A 56 656 32 HOH HOH . 
N 7 HOH A 57 657 11 HOH HOH . 
N 7 HOH A 58 658 14 HOH HOH . 
N 7 HOH A 59 659 57 HOH HOH . 
N 7 HOH A 60 660 25 HOH HOH . 
N 7 HOH A 61 661 109 HOH HOH . 
N 7 HOH A 62 662 52 HOH HOH . 
N 7 HOH A 63 663 65 HOH HOH . 
N 7 HOH A 64 664 51 HOH HOH . 
N 7 HOH A 65 665 9 HOH HOH . 
N 7 HOH A 66 666 94 HOH HOH . 
N 7 HOH A 67 667 8 HOH HOH . 
N 7 HOH A 68 668 98 HOH HOH . 
N 7 HOH A 69 669 18 HOH HOH . 
N 7 HOH A 70 670 84 HOH HOH . 
N 7 HOH A 71 671 30 HOH HOH . 
N 7 HOH A 72 672 6 HOH HOH . 
N 7 HOH A 73 673 80 HOH HOH . 
N 7 HOH A 74 674 62 HOH HOH . 
N 7 HOH A 75 675 101 HOH HOH . 
N 7 HOH A 76 676 59 HOH HOH . 
N 7 HOH A 77 677 26 HOH HOH . 
N 7 HOH A 78 678 68 HOH HOH . 
N 7 HOH A 79 679 64 HOH HOH . 
N 7 HOH A 80 680 102 HOH HOH . 
N 7 HOH A 81 681 96 HOH HOH . 
N 7 HOH A 82 682 31 HOH HOH . 
N 7 HOH A 83 683 15 HOH HOH . 
N 7 HOH A 84 684 38 HOH HOH . 
N 7 HOH A 85 685 78 HOH HOH . 
N 7 HOH A 86 686 71 HOH HOH . 
N 7 HOH A 87 687 82 HOH HOH . 
N 7 HOH A 88 688 50 HOH HOH . 
N 7 HOH A 89 689 34 HOH HOH . 
N 7 HOH A 90 690 63 HOH HOH . 
N 7 HOH A 91 691 115 HOH HOH . 
N 7 HOH A 92 692 93 HOH HOH . 
N 7 HOH A 93 693 16 HOH HOH . 
N 7 HOH A 94 694 92 HOH HOH . 
N 7 HOH A 95 695 110 HOH HOH . 
N 7 HOH A 96 696 87 HOH HOH . 
N 7 HOH A 97 697 33 HOH HOH . 
N 7 HOH A 98 698 90 HOH HOH . 
N 7 HOH A 99 699 118 HOH HOH . 
N 7 HOH A 100 700 74 HOH HOH . 
N 7 HOH A 101 701 103 HOH HOH . 
N 7 HOH A 102 702 69 HOH HOH . 
N 7 HOH A 103 703 106 HOH HOH . 
N 7 HOH A 104 704 66 HOH HOH . 
N 7 HOH A 105 705 95 HOH HOH . 
N 7 HOH A 106 706 76 HOH HOH . 
N 7 HOH A 107 707 127 HOH HOH . 
N 7 HOH A 108 708 112 HOH HOH . 
N 7 HOH A 109 709 120 HOH HOH . 
N 7 HOH A 110 710 100 HOH HOH . 
N 7 HOH A 111 711 40 HOH HOH . 
N 7 HOH A 112 712 48 HOH HOH . 
N 7 HOH A 113 713 128 HOH HOH . 
N 7 HOH A 114 714 53 HOH HOH . 
N 7 HOH A 115 715 124 HOH HOH . 
N 7 HOH A 116 716 97 HOH HOH . 
N 7 HOH A 117 717 108 HOH HOH . 
N 7 HOH A 118 718 104 HOH HOH . 
N 7 HOH A 119 719 129 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . J 3 -12.115 -1.093 -8.451 1 26.53 ? C1 EDO 509 A 1 
HETATM 2 O O1 EDO . . . J 3 -11.284 0.061 -8.645 1 19.82 ? O1 EDO 509 A 1 
HETATM 3 C C2 EDO . . . J 3 -12.558 -1.145 -7 1 32.94 ? C2 EDO 509 A 1 
HETATM 4 O O2 EDO . . . J 3 -11.388 -1.232 -6.184 1 31.76 ? O2 EDO 509 A 1 
HETATM 5 H H11 EDO . . . J 3 -12.988 -1.036 -9.104 1 31.83 ? H11 EDO 509 A 1 
HETATM 6 H H12 EDO . . . J 3 -11.558 -1.998 -8.702 1 31.83 ? H12 EDO 509 A 1 
HETATM 7 H HO1 EDO . . . J 3 -10.998 0.1 -9.568 1 23.78 ? HO1 EDO 509 A 1 
HETATM 8 H H21 EDO . . . J 3 -13.124 -0.247 -6.748 1 39.52 ? H21 EDO 509 A 1 
HETATM 9 H H22 EDO . . . J 3 -13.196 -2.016 -6.834 1 39.52 ? H22 EDO 509 A 1 
HETATM 10 H HO2 EDO . . . J 3 -11.646 -1.266 -5.253 1 38.11 ? HO2 EDO 509 A 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           252 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           10 
#