data_5JIY # _model_server_result.job_id pTm74JftPTN_eMRd5L3KxA _model_server_result.datetime_utc '2024-11-15 21:37:33' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5jiy # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":1204}' # _entry.id 5JIY # _exptl.entry_id 5JIY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 65.409 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ZINC ION' _entity.pdbx_number_of_molecules 8 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90.28 _cell.angle_gamma 90 _cell.entry_id 5JIY _cell.length_a 56.611 _cell.length_b 78.463 _cell.length_c 73.084 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5JIY _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 F N N ? 3 G N N ? 3 H N N ? 3 J N N ? 3 K N N ? 3 L N N ? 3 M N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 B C ARG 6 F ARG 8 1_555 B N NLE 7 F NLE 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.359 ? covale ? covale2 B C NLE 7 F NLE 9 1_555 B N SER 8 F SER 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.309 ? covale ? covale3 D C ARG 6 G ARG 8 1_555 D N NLE 7 G NLE 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale4 D C NLE 7 G NLE 9 1_555 D N SER 8 G SER 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.344 ? metalc ? metalc1 A SG CYS 59 A CYS 974 1_555 E ZN ZN . A ZN 1201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.368 ? metalc ? metalc2 A SG CYS 59 A CYS 974 1_555 F ZN ZN . A ZN 1202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.375 ? metalc ? metalc3 A SG CYS 61 A CYS 976 1_555 F ZN ZN . A ZN 1202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.312 ? metalc ? metalc4 A SG CYS 65 A CYS 980 1_555 F ZN ZN . A ZN 1202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.375 ? metalc ? metalc5 A SG CYS 65 A CYS 980 1_555 G ZN ZN . A ZN 1203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.336 ? metalc ? metalc6 A SG CYS 70 A CYS 985 1_555 F ZN ZN . A ZN 1202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.277 ? metalc ? metalc7 A SG CYS 72 A CYS 987 1_555 E ZN ZN . A ZN 1201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.366 ? metalc ? metalc8 A SG CYS 102 A CYS 1017 1_555 E ZN ZN . A ZN 1201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.375 ? metalc ? metalc9 A SG CYS 102 A CYS 1017 1_555 G ZN ZN . A ZN 1203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.356 ? metalc ? metalc10 A SG CYS 106 A CYS 1021 1_555 E ZN ZN . A ZN 1201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.277 ? metalc ? metalc11 A SG CYS 108 A CYS 1023 1_555 G ZN ZN . A ZN 1203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.262 ? metalc ? metalc12 A SG CYS 112 A CYS 1027 1_555 G ZN ZN . A ZN 1203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.351 ? metalc ? metalc13 A SG CYS 200 A CYS 1115 1_555 H ZN ZN . A ZN 1204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.409 ? metalc ? metalc14 A SG CYS 253 A CYS 1168 1_555 H ZN ZN . A ZN 1204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.274 ? metalc ? metalc15 A SG CYS 255 A CYS 1170 1_555 H ZN ZN . A ZN 1204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.361 ? metalc ? metalc16 A SG CYS 260 A CYS 1175 1_555 H ZN ZN . A ZN 1204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.26 ? metalc ? metalc17 C SG CYS 59 B CYS 974 1_555 J ZN ZN . B ZN 1201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.415 ? metalc ? metalc18 C SG CYS 59 B CYS 974 1_555 L ZN ZN . B ZN 1203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.359 ? metalc ? metalc19 C SG CYS 61 B CYS 976 1_555 L ZN ZN . B ZN 1203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.316 ? metalc ? metalc20 C SG CYS 65 B CYS 980 1_555 K ZN ZN . B ZN 1202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.295 ? metalc ? metalc21 C SG CYS 65 B CYS 980 1_555 L ZN ZN . B ZN 1203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.372 ? metalc ? metalc22 C SG CYS 70 B CYS 985 1_555 L ZN ZN . B ZN 1203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.323 ? metalc ? metalc23 C SG CYS 72 B CYS 987 1_555 J ZN ZN . B ZN 1201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.357 ? metalc ? metalc24 C SG CYS 102 B CYS 1017 1_555 J ZN ZN . B ZN 1201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.367 ? metalc ? metalc25 C SG CYS 102 B CYS 1017 1_555 K ZN ZN . B ZN 1202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.405 ? metalc ? metalc26 C SG CYS 106 B CYS 1021 1_555 J ZN ZN . B ZN 1201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.317 ? metalc ? metalc27 C SG CYS 108 B CYS 1023 1_555 K ZN ZN . B ZN 1202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.308 ? metalc ? metalc28 C SG CYS 112 B CYS 1027 1_555 K ZN ZN . B ZN 1202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.33 ? metalc ? metalc29 C SG CYS 200 B CYS 1115 1_555 M ZN ZN . B ZN 1204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.46 ? metalc ? metalc30 C SG CYS 253 B CYS 1168 1_555 M ZN ZN . B ZN 1204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.275 ? metalc ? metalc31 C SG CYS 255 B CYS 1170 1_555 M ZN ZN . B ZN 1204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.33 ? metalc ? metalc32 C SG CYS 260 B CYS 1175 1_555 M ZN ZN . B ZN 1204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.265 ? # _chem_comp.formula 'Zn 2' _chem_comp.formula_weight 65.409 _chem_comp.id ZN _chem_comp.mon_nstd_flag . _chem_comp.name 'ZINC ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5JIY _atom_sites.fract_transf_matrix[1][1] 0.017664 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000087 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012745 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013683 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 ZN A 1 1201 1 ZN ZN . F 3 ZN A 1 1202 2 ZN ZN . G 3 ZN A 1 1203 3 ZN ZN . H 3 ZN A 1 1204 8 ZN ZN . I 4 SAM A 1 1205 1 SAM SAM . J 3 ZN B 1 1201 4 ZN ZN . K 3 ZN B 1 1202 5 ZN ZN . L 3 ZN B 1 1203 6 ZN ZN . M 3 ZN B 1 1204 7 ZN ZN . N 4 SAM B 1 1205 2 SAM SAM . O 5 HOH A 1 1301 65 HOH HOH . O 5 HOH A 2 1302 85 HOH HOH . O 5 HOH A 3 1303 116 HOH HOH . O 5 HOH A 4 1304 12 HOH HOH . O 5 HOH A 5 1305 59 HOH HOH . O 5 HOH A 6 1306 101 HOH HOH . O 5 HOH A 7 1307 77 HOH HOH . O 5 HOH A 8 1308 57 HOH HOH . O 5 HOH A 9 1309 87 HOH HOH . O 5 HOH A 10 1310 110 HOH HOH . O 5 HOH A 11 1311 107 HOH HOH . O 5 HOH A 12 1312 29 HOH HOH . O 5 HOH A 13 1313 123 HOH HOH . O 5 HOH A 14 1314 51 HOH HOH . O 5 HOH A 15 1315 80 HOH HOH . O 5 HOH A 16 1316 82 HOH HOH . O 5 HOH A 17 1317 5 HOH HOH . O 5 HOH A 18 1318 8 HOH HOH . O 5 HOH A 19 1319 61 HOH HOH . O 5 HOH A 20 1320 54 HOH HOH . O 5 HOH A 21 1321 103 HOH HOH . O 5 HOH A 22 1322 7 HOH HOH . O 5 HOH A 23 1323 22 HOH HOH . O 5 HOH A 24 1324 27 HOH HOH . O 5 HOH A 25 1325 26 HOH HOH . O 5 HOH A 26 1326 115 HOH HOH . O 5 HOH A 27 1327 21 HOH HOH . O 5 HOH A 28 1328 3 HOH HOH . O 5 HOH A 29 1329 129 HOH HOH . O 5 HOH A 30 1330 53 HOH HOH . O 5 HOH A 31 1331 67 HOH HOH . O 5 HOH A 32 1332 52 HOH HOH . O 5 HOH A 33 1333 111 HOH HOH . O 5 HOH A 34 1334 128 HOH HOH . O 5 HOH A 35 1335 126 HOH HOH . O 5 HOH A 36 1336 4 HOH HOH . O 5 HOH A 37 1337 132 HOH HOH . O 5 HOH A 38 1338 135 HOH HOH . O 5 HOH A 39 1339 19 HOH HOH . O 5 HOH A 40 1340 64 HOH HOH . O 5 HOH A 41 1341 6 HOH HOH . O 5 HOH A 42 1342 76 HOH HOH . O 5 HOH A 43 1343 10 HOH HOH . O 5 HOH A 44 1344 130 HOH HOH . O 5 HOH A 45 1345 104 HOH HOH . O 5 HOH A 46 1346 18 HOH HOH . O 5 HOH A 47 1347 78 HOH HOH . O 5 HOH A 48 1348 69 HOH HOH . O 5 HOH A 49 1349 60 HOH HOH . O 5 HOH A 50 1350 68 HOH HOH . O 5 HOH A 51 1351 84 HOH HOH . O 5 HOH A 52 1352 23 HOH HOH . O 5 HOH A 53 1353 95 HOH HOH . O 5 HOH A 54 1354 66 HOH HOH . O 5 HOH A 55 1355 112 HOH HOH . O 5 HOH A 56 1356 102 HOH HOH . O 5 HOH A 57 1357 70 HOH HOH . O 5 HOH A 58 1358 121 HOH HOH . O 5 HOH A 59 1359 71 HOH HOH . O 5 HOH A 60 1360 55 HOH HOH . O 5 HOH A 61 1361 20 HOH HOH . O 5 HOH A 62 1362 124 HOH HOH . O 5 HOH A 63 1363 133 HOH HOH . O 5 HOH A 64 1364 106 HOH HOH . O 5 HOH A 65 1365 98 HOH HOH . O 5 HOH A 66 1366 1 HOH HOH . O 5 HOH A 67 1367 58 HOH HOH . O 5 HOH A 68 1368 94 HOH HOH . O 5 HOH A 69 1369 30 HOH HOH . O 5 HOH A 70 1370 125 HOH HOH . O 5 HOH A 71 1371 127 HOH HOH . O 5 HOH A 72 1372 131 HOH HOH . O 5 HOH A 73 1373 114 HOH HOH . O 5 HOH A 74 1374 122 HOH HOH . O 5 HOH A 75 1375 137 HOH HOH . O 5 HOH A 76 1376 113 HOH HOH . O 5 HOH A 77 1377 83 HOH HOH . P 5 HOH F 1 101 105 HOH HOH . Q 5 HOH B 1 1301 91 HOH HOH . Q 5 HOH B 2 1302 75 HOH HOH . Q 5 HOH B 3 1303 96 HOH HOH . Q 5 HOH B 4 1304 81 HOH HOH . Q 5 HOH B 5 1305 31 HOH HOH . Q 5 HOH B 6 1306 37 HOH HOH . Q 5 HOH B 7 1307 88 HOH HOH . Q 5 HOH B 8 1308 79 HOH HOH . Q 5 HOH B 9 1309 63 HOH HOH . Q 5 HOH B 10 1310 9 HOH HOH . Q 5 HOH B 11 1311 25 HOH HOH . Q 5 HOH B 12 1312 62 HOH HOH . Q 5 HOH B 13 1313 92 HOH HOH . Q 5 HOH B 14 1314 97 HOH HOH . Q 5 HOH B 15 1315 14 HOH HOH . Q 5 HOH B 16 1316 13 HOH HOH . Q 5 HOH B 17 1317 90 HOH HOH . Q 5 HOH B 18 1318 56 HOH HOH . Q 5 HOH B 19 1319 136 HOH HOH . Q 5 HOH B 20 1320 50 HOH HOH . Q 5 HOH B 21 1321 41 HOH HOH . Q 5 HOH B 22 1322 2 HOH HOH . Q 5 HOH B 23 1323 89 HOH HOH . Q 5 HOH B 24 1324 42 HOH HOH . Q 5 HOH B 25 1325 109 HOH HOH . Q 5 HOH B 26 1326 93 HOH HOH . Q 5 HOH B 27 1327 32 HOH HOH . Q 5 HOH B 28 1328 117 HOH HOH . Q 5 HOH B 29 1329 38 HOH HOH . Q 5 HOH B 30 1330 39 HOH HOH . Q 5 HOH B 31 1331 33 HOH HOH . Q 5 HOH B 32 1332 73 HOH HOH . Q 5 HOH B 33 1333 99 HOH HOH . Q 5 HOH B 34 1334 86 HOH HOH . Q 5 HOH B 35 1335 119 HOH HOH . Q 5 HOH B 36 1336 35 HOH HOH . Q 5 HOH B 37 1337 15 HOH HOH . Q 5 HOH B 38 1338 28 HOH HOH . Q 5 HOH B 39 1339 134 HOH HOH . Q 5 HOH B 40 1340 45 HOH HOH . Q 5 HOH B 41 1341 72 HOH HOH . Q 5 HOH B 42 1342 108 HOH HOH . Q 5 HOH B 43 1343 36 HOH HOH . Q 5 HOH B 44 1344 48 HOH HOH . Q 5 HOH B 45 1345 34 HOH HOH . Q 5 HOH B 46 1346 17 HOH HOH . Q 5 HOH B 47 1347 24 HOH HOH . Q 5 HOH B 48 1348 16 HOH HOH . Q 5 HOH B 49 1349 49 HOH HOH . Q 5 HOH B 50 1350 118 HOH HOH . Q 5 HOH B 51 1351 47 HOH HOH . Q 5 HOH B 52 1352 44 HOH HOH . Q 5 HOH B 53 1353 43 HOH HOH . Q 5 HOH B 54 1354 46 HOH HOH . Q 5 HOH B 55 1355 120 HOH HOH . Q 5 HOH B 56 1356 100 HOH HOH . Q 5 HOH B 57 1357 74 HOH HOH . Q 5 HOH B 58 1358 40 HOH HOH . Q 5 HOH B 59 1359 11 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol ZN _atom_site.label_atom_id ZN _atom_site.label_comp_id ZN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id H _atom_site.label_entity_id 3 _atom_site.Cartn_x 96.154 _atom_site.Cartn_y -1.839 _atom_site.Cartn_z 121.69 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 24.6 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id ZN _atom_site.auth_comp_id ZN _atom_site.auth_seq_id 1204 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 324 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 1 #