data_5JJ4 # _model_server_result.job_id 82UNVCT2lkcPzfS47PsSkQ _model_server_result.datetime_utc '2025-03-06 09:54:08' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5jj4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":1201}' # _entry.id 5JJ4 # _exptl.entry_id 5JJ4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 65.409 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ZINC ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 102.86 _cell.angle_gamma 90 _cell.entry_id 5JJ4 _cell.length_a 106.793 _cell.length_b 96.806 _cell.length_c 108.692 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5JJ4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 PISA monomeric 1 author_and_software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,D,G,H,M 1 1 B,E,I,J,N 2 1 C,F,K,L,O 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 G N N ? 3 I N N ? 3 K N N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 2 2 1 GLC GLC C1 O1 . O4 HO4 . sing 2 ? 2 3 2 GLC GLC C1 O1 . O4 HO4 . sing 3 ? 2 4 3 GLC GLC C1 O1 . O4 HO4 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n D GLC 1 D 1 GLC F 4 MTT 2 n D GLC 2 D 2 GLC F 4 MTT 2 n D GLC 3 D 3 GLC F 4 MTT 2 n D GLC 4 D 4 GLC F 4 MTT 2 n E GLC 1 E 1 GLC F 3 MTT 2 n E GLC 2 E 2 GLC F 3 MTT 2 n E GLC 3 E 3 GLC F 3 MTT 2 n E GLC 4 E 4 GLC F 3 MTT 2 n F GLC 1 F 1 GLC F 5 MTT 2 n F GLC 2 F 2 GLC F 5 MTT 2 n F GLC 3 F 3 GLC F 5 MTT 2 n F GLC 4 F 4 GLC F 5 MTT # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 D O4 GLC . D GLC 1 1_555 D C1 GLC . D GLC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.426 sing covale ? covale2 D O4 GLC . D GLC 2 1_555 D C1 GLC . D GLC 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.467 sing covale ? covale3 D O4 GLC . D GLC 3 1_555 D C1 GLC . D GLC 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.416 sing covale ? covale4 E O4 GLC . E GLC 1 1_555 E C1 GLC . E GLC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.426 sing covale ? covale5 E O4 GLC . E GLC 2 1_555 E C1 GLC . E GLC 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.457 sing covale ? covale6 E O4 GLC . E GLC 3 1_555 E C1 GLC . E GLC 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.417 sing covale ? covale7 F O4 GLC . F GLC 1 1_555 F C1 GLC . F GLC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.429 sing covale ? covale8 F O4 GLC . F GLC 2 1_555 F C1 GLC . F GLC 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.468 sing covale ? covale9 F O4 GLC . F GLC 3 1_555 F C1 GLC . F GLC 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.421 sing metalc ? metalc1 A O GLN 325 C GLN 325 1_555 H CA CA . C CA 1202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.502 ? metalc ? metalc2 A O GLY 327 C GLY 327 1_555 H CA CA . C CA 1202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.85 ? metalc ? metalc3 A ND1 HIS 419 C HIS 1056 1_555 G ZN ZN . C ZN 1201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.003 ? metalc ? metalc4 A SG CYS 450 C CYS 1087 1_555 G ZN ZN . C ZN 1201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.274 ? metalc ? metalc5 A SG CYS 453 C CYS 1090 1_555 G ZN ZN . C ZN 1201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.282 ? metalc ? metalc6 G ZN ZN . C ZN 1201 1_555 M O HOH . C HOH 1307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.085 ? metalc ? metalc7 B O GLN 325 A GLN 325 1_555 J CA CA . A CA 1202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.71 ? metalc ? metalc8 B O GLY 327 A GLY 327 1_555 J CA CA . A CA 1202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.791 ? metalc ? metalc9 B ND1 HIS 419 A HIS 1056 1_555 I ZN ZN . A ZN 1201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.003 ? metalc ? metalc10 B SG CYS 450 A CYS 1087 1_555 I ZN ZN . A ZN 1201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.339 ? metalc ? metalc11 B SG CYS 453 A CYS 1090 1_555 I ZN ZN . A ZN 1201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.268 ? metalc ? metalc12 I ZN ZN . A ZN 1201 1_555 N O HOH . A HOH 1306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.092 ? metalc ? metalc13 C O GLN 325 B GLN 325 1_555 L CA CA . B CA 1202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.572 ? metalc ? metalc14 C O GLY 327 B GLY 327 1_555 L CA CA . B CA 1202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.245 ? metalc ? metalc15 C ND1 HIS 419 B HIS 1056 1_555 K ZN ZN . B ZN 1201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? metalc ? metalc16 C SG CYS 450 B CYS 1087 1_555 K ZN ZN . B ZN 1201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.265 ? metalc ? metalc17 C SG CYS 453 B CYS 1090 1_555 K ZN ZN . B ZN 1201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.281 ? metalc ? metalc18 K ZN ZN . B ZN 1201 1_555 O O HOH . B HOH 1303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.094 ? # _chem_comp.formula 'Zn 2' _chem_comp.formula_weight 65.409 _chem_comp.id ZN _chem_comp.mon_nstd_flag . _chem_comp.name 'ZINC ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5JJ4 _atom_sites.fract_transf_matrix[1][1] 0.009364 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002139 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01033 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009437 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 3 ZN C 1 1201 2 ZN ZN . H 4 CA C 1 1202 1 CA CA . I 3 ZN A 1 1201 3 ZN ZN . J 4 CA A 1 1202 2 CA CA . K 3 ZN B 1 1201 1 ZN ZN . L 4 CA B 1 1202 3 CA CA . M 5 HOH C 1 1301 11 HOH HOH . M 5 HOH C 2 1302 26 HOH HOH . M 5 HOH C 3 1303 23 HOH HOH . M 5 HOH C 4 1304 17 HOH HOH . M 5 HOH C 5 1305 15 HOH HOH . M 5 HOH C 6 1306 24 HOH HOH . M 5 HOH C 7 1307 27 HOH HOH . M 5 HOH C 8 1308 39 HOH HOH . M 5 HOH C 9 1309 25 HOH HOH . M 5 HOH C 10 1310 14 HOH HOH . M 5 HOH C 11 1311 18 HOH HOH . M 5 HOH C 12 1312 36 HOH HOH . N 5 HOH A 1 1301 8 HOH HOH . N 5 HOH A 2 1302 22 HOH HOH . N 5 HOH A 3 1303 40 HOH HOH . N 5 HOH A 4 1304 16 HOH HOH . N 5 HOH A 5 1305 34 HOH HOH . N 5 HOH A 6 1306 35 HOH HOH . N 5 HOH A 7 1307 20 HOH HOH . N 5 HOH A 8 1308 12 HOH HOH . N 5 HOH A 9 1309 28 HOH HOH . N 5 HOH A 10 1310 6 HOH HOH . N 5 HOH A 11 1311 3 HOH HOH . N 5 HOH A 12 1312 33 HOH HOH . N 5 HOH A 13 1313 7 HOH HOH . O 5 HOH B 1 1301 42 HOH HOH . O 5 HOH B 2 1302 41 HOH HOH . O 5 HOH B 3 1303 31 HOH HOH . O 5 HOH B 4 1304 43 HOH HOH . O 5 HOH B 5 1305 32 HOH HOH . O 5 HOH B 6 1306 9 HOH HOH . O 5 HOH B 7 1307 30 HOH HOH . O 5 HOH B 8 1308 29 HOH HOH . O 5 HOH B 9 1309 19 HOH HOH . O 5 HOH B 10 1310 21 HOH HOH . O 5 HOH B 11 1311 1 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol ZN _atom_site.label_atom_id ZN _atom_site.label_comp_id ZN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id K _atom_site.label_entity_id 3 _atom_site.Cartn_x 54.378 _atom_site.Cartn_y 6.849 _atom_site.Cartn_z 192.934 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 71.14 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id ZN _atom_site.auth_comp_id ZN _atom_site.auth_seq_id 1201 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 39 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 24 _model_server_stats.query_time_ms 269 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #