data_5JJE
#
_model_server_result.job_id            PzVqUhn8KwC9M18AppbMMw 
_model_server_result.datetime_utc      '2024-11-15 13:01:32' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5jje 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":301}' 
#
_entry.id    5JJE 
#
_exptl.entry_id    5JJE 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              284.436 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            RETINAL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5JJE 
_cell.length_a            49.642 
_cell.length_b            113.661 
_cell.length_c            125.995 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5JJE 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        24 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'I 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 7_556 -x+1/2,y,-z+1 -1 0 0 0 1 0 0 0 -1 24.821 0 125.995 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_struct_conn.conn_type_id                   covale 
_struct_conn.details                        ? 
_struct_conn.id                             covale1 
_struct_conn.ptnr1_label_asym_id            A 
_struct_conn.ptnr1_label_atom_id            NZ 
_struct_conn.ptnr1_label_comp_id            LYS 
_struct_conn.ptnr1_label_seq_id             204 
_struct_conn.ptnr1_auth_asym_id             A 
_struct_conn.ptnr1_auth_comp_id             LYS 
_struct_conn.ptnr1_auth_seq_id              205 
_struct_conn.ptnr1_symmetry                 1_555 
_struct_conn.ptnr2_label_asym_id            C 
_struct_conn.ptnr2_label_atom_id            C15 
_struct_conn.ptnr2_label_comp_id            RET 
_struct_conn.ptnr2_label_seq_id             . 
_struct_conn.ptnr2_auth_asym_id             A 
_struct_conn.ptnr2_auth_comp_id             RET 
_struct_conn.ptnr2_auth_seq_id              301 
_struct_conn.ptnr2_symmetry                 1_555 
_struct_conn.pdbx_ptnr1_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr1_label_alt_id        ? 
_struct_conn.pdbx_ptnr1_standard_comp_id    ? 
_struct_conn.pdbx_ptnr2_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr2_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr3_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_label_asym_id       ? 
_struct_conn.pdbx_ptnr3_label_atom_id       ? 
_struct_conn.pdbx_ptnr3_label_comp_id       ? 
_struct_conn.pdbx_ptnr3_label_seq_id        ? 
_struct_conn.pdbx_PDB_id                    ? 
_struct_conn.pdbx_dist_value                1.318 
_struct_conn.pdbx_value_order               ? 
#
_chem_comp.formula           'C20 H28 O' 
_chem_comp.formula_weight    284.436 
_chem_comp.id                RET 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              RETINAL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 RET sing 373 n n 
C1 C6 RET sing 374 n n 
C1 C16 RET sing 375 n n 
C1 C17 RET sing 376 n n 
C2 C3 RET sing 377 n n 
C2 H21 RET sing 378 n n 
C2 H22 RET sing 379 n n 
C3 C4 RET sing 380 n n 
C3 H31 RET sing 381 n n 
C3 H32 RET sing 382 n n 
C4 C5 RET sing 383 n n 
C4 H41 RET sing 384 n n 
C4 H42 RET sing 385 n n 
C5 C6 RET doub 386 n n 
C5 C18 RET sing 387 n n 
C6 C7 RET sing 388 n n 
C7 C8 RET doub 389 e n 
C7 H7 RET sing 390 n n 
C8 C9 RET sing 391 n n 
C8 H8 RET sing 392 n n 
C9 C10 RET doub 393 e n 
C9 C19 RET sing 394 n n 
C10 C11 RET sing 395 n n 
C10 H10 RET sing 396 n n 
C11 C12 RET doub 397 e n 
C11 H11 RET sing 398 n n 
C12 C13 RET sing 399 n n 
C12 H12 RET sing 400 n n 
C13 C14 RET doub 401 e n 
C13 C20 RET sing 402 n n 
C14 C15 RET sing 403 n n 
C14 H14 RET sing 404 n n 
C15 O1 RET doub 405 n n 
C15 H15 RET sing 406 n n 
C16 H161 RET sing 407 n n 
C16 H162 RET sing 408 n n 
C16 H163 RET sing 409 n n 
C17 H171 RET sing 410 n n 
C17 H172 RET sing 411 n n 
C17 H173 RET sing 412 n n 
C18 H181 RET sing 413 n n 
C18 H182 RET sing 414 n n 
C18 H183 RET sing 415 n n 
C19 H191 RET sing 416 n n 
C19 H192 RET sing 417 n n 
C19 H193 RET sing 418 n n 
C20 H201 RET sing 419 n n 
C20 H202 RET sing 420 n n 
C20 H203 RET sing 421 n n 
#
_atom_sites.entry_id                     5JJE 
_atom_sites.fract_transf_matrix[1][1]    0.020144 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008798 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007937 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 RET A 1 301 305 RET RET . 
D 4 BOG A 1 302 1 BOG BOG . 
E 5 LFA A 1 303 2 LFA LFA . 
F 5 LFA A 1 304 3 LFA LFA . 
G 5 LFA A 1 305 4 LFA LFA . 
H 5 LFA A 1 306 5 LFA LFA . 
I 5 LFA A 1 307 7 LFA LFA . 
J 5 LFA A 1 308 8 LFA LFA . 
K 5 LFA A 1 309 9 LFA LFA . 
L 5 LFA A 1 310 1 LFA LFA . 
M 5 LFA A 1 311 1 LFA LFA . 
N 5 LFA B 1 201 1 LFA LFA . 
O 5 LFA B 1 202 6 LFA LFA . 
P 5 LFA B 1 203 1 LFA LFA . 
Q 6 HOH A 1 401 29 HOH HOH . 
Q 6 HOH A 2 402 33 HOH HOH . 
Q 6 HOH A 3 403 97 HOH HOH . 
Q 6 HOH A 4 404 30 HOH HOH . 
Q 6 HOH A 5 405 8 HOH HOH . 
Q 6 HOH A 6 406 13 HOH HOH . 
Q 6 HOH A 7 407 90 HOH HOH . 
Q 6 HOH A 8 408 19 HOH HOH . 
Q 6 HOH A 9 409 57 HOH HOH . 
Q 6 HOH A 10 410 95 HOH HOH . 
Q 6 HOH A 11 411 106 HOH HOH . 
Q 6 HOH A 12 412 51 HOH HOH . 
Q 6 HOH A 13 413 16 HOH HOH . 
Q 6 HOH A 14 414 68 HOH HOH . 
Q 6 HOH A 15 415 27 HOH HOH . 
Q 6 HOH A 16 416 88 HOH HOH . 
Q 6 HOH A 17 417 34 HOH HOH . 
Q 6 HOH A 18 418 38 HOH HOH . 
Q 6 HOH A 19 419 110 HOH HOH . 
Q 6 HOH A 20 420 7 HOH HOH . 
Q 6 HOH A 21 421 20 HOH HOH . 
Q 6 HOH A 22 422 54 HOH HOH . 
Q 6 HOH A 23 423 2 HOH HOH . 
Q 6 HOH A 24 424 65 HOH HOH . 
Q 6 HOH A 25 425 96 HOH HOH . 
Q 6 HOH A 26 426 47 HOH HOH . 
Q 6 HOH A 27 427 22 HOH HOH . 
Q 6 HOH A 28 428 85 HOH HOH . 
Q 6 HOH A 29 429 104 HOH HOH . 
Q 6 HOH A 30 430 112 HOH HOH . 
Q 6 HOH A 31 431 25 HOH HOH . 
Q 6 HOH A 32 432 82 HOH HOH . 
Q 6 HOH A 33 433 49 HOH HOH . 
Q 6 HOH A 34 434 91 HOH HOH . 
Q 6 HOH A 35 435 50 HOH HOH . 
Q 6 HOH A 36 436 107 HOH HOH . 
Q 6 HOH A 37 437 93 HOH HOH . 
Q 6 HOH A 38 438 59 HOH HOH . 
Q 6 HOH A 39 439 52 HOH HOH . 
Q 6 HOH A 40 440 99 HOH HOH . 
Q 6 HOH A 41 441 114 HOH HOH . 
Q 6 HOH A 42 442 111 HOH HOH . 
Q 6 HOH A 43 443 87 HOH HOH . 
Q 6 HOH A 44 444 117 HOH HOH . 
Q 6 HOH A 45 445 43 HOH HOH . 
Q 6 HOH A 46 446 92 HOH HOH . 
R 6 HOH B 1 301 17 HOH HOH . 
R 6 HOH B 2 302 109 HOH HOH . 
R 6 HOH B 3 303 28 HOH HOH . 
R 6 HOH B 4 304 103 HOH HOH . 
R 6 HOH B 5 305 94 HOH HOH . 
R 6 HOH B 6 306 102 HOH HOH . 
R 6 HOH B 7 307 55 HOH HOH . 
R 6 HOH B 8 308 115 HOH HOH . 
R 6 HOH B 9 309 84 HOH HOH . 
R 6 HOH B 10 310 113 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 RET . . . C 3 -6.688 5.385 51.221 1 12.49 ? C1 RET 301 A 1 
HETATM 2 C C2 RET . . . C 3 -7.419 6.528 51.87 1 15.76 ? C2 RET 301 A 1 
HETATM 3 C C3 RET . . . C 3 -8.782 5.979 52.226 1 11.52 ? C3 RET 301 A 1 
HETATM 4 C C4 RET . . . C 3 -8.517 4.871 53.272 1 16.62 ? C4 RET 301 A 1 
HETATM 5 C C5 RET . . . C 3 -7.561 3.724 53.008 1 5.4 ? C5 RET 301 A 1 
HETATM 6 C C6 RET . . . C 3 -6.736 4.009 51.96 1 6.12 ? C6 RET 301 A 1 
HETATM 7 C C7 RET . . . C 3 -5.828 2.897 51.61 1 11.35 ? C7 RET 301 A 1 
HETATM 8 C C8 RET . . . C 3 -4.867 2.908 50.622 1 9.6 ? C8 RET 301 A 1 
HETATM 9 C C9 RET . . . C 3 -3.99 1.809 50.227 1 8.97 ? C9 RET 301 A 1 
HETATM 10 C C10 RET . . . C 3 -3.11 2.029 49.197 1 8.2 ? C10 RET 301 A 1 
HETATM 11 C C11 RET . . . C 3 -2.195 0.925 48.792 1 10.15 ? C11 RET 301 A 1 
HETATM 12 C C12 RET . . . C 3 -1.482 1.256 47.659 1 8.48 ? C12 RET 301 A 1 
HETATM 13 C C13 RET . . . C 3 -0.471 0.346 47.089 1 7.03 ? C13 RET 301 A 1 
HETATM 14 C C14 RET . . . C 3 0.159 0.823 45.98 1 9.63 ? C14 RET 301 A 1 
HETATM 15 C C15 RET . . . C 3 1.086 0.029 45.175 1 10.42 ? C15 RET 301 A 1 
HETATM 16 C C16 RET . . . C 3 -7.187 5.179 49.732 1 7.04 ? C16 RET 301 A 1 
HETATM 17 C C17 RET . . . C 3 -5.214 6.03 51.141 1 4.62 ? C17 RET 301 A 1 
HETATM 18 C C18 RET . . . C 3 -7.67 2.485 53.831 1 11.8 ? C18 RET 301 A 1 
HETATM 19 C C19 RET . . . C 3 -4.036 0.566 51.043 1 6.53 ? C19 RET 301 A 1 
HETATM 20 C C20 RET . . . C 3 -0.349 -1.056 47.618 1 3.89 ? C20 RET 301 A 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    23 
_model_server_stats.query_time_ms           266 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           20 
#