data_5JJE # _model_server_result.job_id u3rLcWnY3M7IXQ0C0Elpdg _model_server_result.datetime_utc '2024-11-15 12:50:15' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5jje # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":302}' # _entry.id 5JJE # _exptl.entry_id 5JJE _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 292.369 _entity.id 4 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 'octyl beta-D-glucopyranoside' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5JJE _cell.length_a 49.642 _cell.length_b 113.661 _cell.length_c 125.995 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5JJE _symmetry.cell_setting ? _symmetry.Int_Tables_number 24 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 7_556 -x+1/2,y,-z+1 -1 0 0 0 1 0 0 0 -1 24.821 0 125.995 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id NZ _struct_conn.ptnr1_label_comp_id LYS _struct_conn.ptnr1_label_seq_id 204 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id LYS _struct_conn.ptnr1_auth_seq_id 205 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id C _struct_conn.ptnr2_label_atom_id C15 _struct_conn.ptnr2_label_comp_id RET _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id RET _struct_conn.ptnr2_auth_seq_id 301 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.318 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C14 H28 O6' _chem_comp.formula_weight 292.369 _chem_comp.id BOG _chem_comp.mon_nstd_flag n _chem_comp.name 'octyl beta-D-glucopyranoside' _chem_comp.type d-saccharide _chem_comp.pdbx_synonyms 'Beta-Octylglucoside;octyl beta-D-glucoside;octyl D-glucoside;octyl glucoside' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 BOG sing 70 n n C1 C2 BOG sing 71 n n C1 O5 BOG sing 72 n n C1 H1 BOG sing 73 n n O1 C1' BOG sing 74 n n C2 O2 BOG sing 75 n n C2 C3 BOG sing 76 n n C2 H2 BOG sing 77 n n O2 HO2 BOG sing 78 n n C3 O3 BOG sing 79 n n C3 C4 BOG sing 80 n n C3 H3 BOG sing 81 n n O3 HO3 BOG sing 82 n n C4 O4 BOG sing 83 n n C4 C5 BOG sing 84 n n C4 H4 BOG sing 85 n n O4 HO4 BOG sing 86 n n C5 O5 BOG sing 87 n n C5 C6 BOG sing 88 n n C5 H5 BOG sing 89 n n C6 O6 BOG sing 90 n n C6 H61 BOG sing 91 n n C6 H62 BOG sing 92 n n O6 HO6 BOG sing 93 n n C1' C2' BOG sing 94 n n C1' "H1'1" BOG sing 95 n n C1' "H1'2" BOG sing 96 n n C2' C3' BOG sing 97 n n C2' "H2'1" BOG sing 98 n n C2' "H2'2" BOG sing 99 n n C3' C4' BOG sing 100 n n C3' "H3'1" BOG sing 101 n n C3' "H3'2" BOG sing 102 n n C4' C5' BOG sing 103 n n C4' "H4'1" BOG sing 104 n n C4' "H4'2" BOG sing 105 n n C5' C6' BOG sing 106 n n C5' "H5'1" BOG sing 107 n n C5' "H5'2" BOG sing 108 n n C6' C7' BOG sing 109 n n C6' "H6'1" BOG sing 110 n n C6' "H6'2" BOG sing 111 n n C7' C8' BOG sing 112 n n C7' "H7'1" BOG sing 113 n n C7' "H7'2" BOG sing 114 n n C8' "H8'1" BOG sing 115 n n C8' "H8'2" BOG sing 116 n n C8' "H8'3" BOG sing 117 n n # _pdbx_chem_comp_identifier.comp_id BOG _pdbx_chem_comp_identifier.identifier b-octylglucoside _pdbx_chem_comp_identifier.type 'IUPAC CARBOHYDRATE SYMBOL' _pdbx_chem_comp_identifier.program PDB-CARE _pdbx_chem_comp_identifier.program_version 1 # _atom_sites.entry_id 5JJE _atom_sites.fract_transf_matrix[1][1] 0.020144 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008798 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007937 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 RET A 1 301 305 RET RET . D 4 BOG A 1 302 1 BOG BOG . E 5 LFA A 1 303 2 LFA LFA . F 5 LFA A 1 304 3 LFA LFA . G 5 LFA A 1 305 4 LFA LFA . H 5 LFA A 1 306 5 LFA LFA . I 5 LFA A 1 307 7 LFA LFA . J 5 LFA A 1 308 8 LFA LFA . K 5 LFA A 1 309 9 LFA LFA . L 5 LFA A 1 310 1 LFA LFA . M 5 LFA A 1 311 1 LFA LFA . N 5 LFA B 1 201 1 LFA LFA . O 5 LFA B 1 202 6 LFA LFA . P 5 LFA B 1 203 1 LFA LFA . Q 6 HOH A 1 401 29 HOH HOH . Q 6 HOH A 2 402 33 HOH HOH . Q 6 HOH A 3 403 97 HOH HOH . Q 6 HOH A 4 404 30 HOH HOH . Q 6 HOH A 5 405 8 HOH HOH . Q 6 HOH A 6 406 13 HOH HOH . Q 6 HOH A 7 407 90 HOH HOH . Q 6 HOH A 8 408 19 HOH HOH . Q 6 HOH A 9 409 57 HOH HOH . Q 6 HOH A 10 410 95 HOH HOH . Q 6 HOH A 11 411 106 HOH HOH . Q 6 HOH A 12 412 51 HOH HOH . Q 6 HOH A 13 413 16 HOH HOH . Q 6 HOH A 14 414 68 HOH HOH . Q 6 HOH A 15 415 27 HOH HOH . Q 6 HOH A 16 416 88 HOH HOH . Q 6 HOH A 17 417 34 HOH HOH . Q 6 HOH A 18 418 38 HOH HOH . Q 6 HOH A 19 419 110 HOH HOH . Q 6 HOH A 20 420 7 HOH HOH . Q 6 HOH A 21 421 20 HOH HOH . Q 6 HOH A 22 422 54 HOH HOH . Q 6 HOH A 23 423 2 HOH HOH . Q 6 HOH A 24 424 65 HOH HOH . Q 6 HOH A 25 425 96 HOH HOH . Q 6 HOH A 26 426 47 HOH HOH . Q 6 HOH A 27 427 22 HOH HOH . Q 6 HOH A 28 428 85 HOH HOH . Q 6 HOH A 29 429 104 HOH HOH . Q 6 HOH A 30 430 112 HOH HOH . Q 6 HOH A 31 431 25 HOH HOH . Q 6 HOH A 32 432 82 HOH HOH . Q 6 HOH A 33 433 49 HOH HOH . Q 6 HOH A 34 434 91 HOH HOH . Q 6 HOH A 35 435 50 HOH HOH . Q 6 HOH A 36 436 107 HOH HOH . Q 6 HOH A 37 437 93 HOH HOH . Q 6 HOH A 38 438 59 HOH HOH . Q 6 HOH A 39 439 52 HOH HOH . Q 6 HOH A 40 440 99 HOH HOH . Q 6 HOH A 41 441 114 HOH HOH . Q 6 HOH A 42 442 111 HOH HOH . Q 6 HOH A 43 443 87 HOH HOH . Q 6 HOH A 44 444 117 HOH HOH . Q 6 HOH A 45 445 43 HOH HOH . Q 6 HOH A 46 446 92 HOH HOH . R 6 HOH B 1 301 17 HOH HOH . R 6 HOH B 2 302 109 HOH HOH . R 6 HOH B 3 303 28 HOH HOH . R 6 HOH B 4 304 103 HOH HOH . R 6 HOH B 5 305 94 HOH HOH . R 6 HOH B 6 306 102 HOH HOH . R 6 HOH B 7 307 55 HOH HOH . R 6 HOH B 8 308 115 HOH HOH . R 6 HOH B 9 309 84 HOH HOH . R 6 HOH B 10 310 113 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 BOG . . . D 4 2.35 -23.11 41.446 1 66.13 ? C1 BOG 302 A 1 HETATM 2 O O1 BOG . . . D 4 2.451 -22.499 42.714 1 55.93 ? O1 BOG 302 A 1 HETATM 3 C C2 BOG . . . D 4 3.309 -24.294 41.491 1 73.72 ? C2 BOG 302 A 1 HETATM 4 O O2 BOG . . . D 4 4.209 -24.21 40.375 1 75.71 ? O2 BOG 302 A 1 HETATM 5 C C3 BOG . . . D 4 2.555 -25.623 41.529 1 77.67 ? C3 BOG 302 A 1 HETATM 6 O O3 BOG . . . D 4 1.866 -25.764 42.78 1 77.85 ? O3 BOG 302 A 1 HETATM 7 C C4 BOG . . . D 4 1.564 -25.732 40.369 1 79.49 ? C4 BOG 302 A 1 HETATM 8 O O4 BOG . . . D 4 2.25 -26.15 39.176 1 80.95 ? O4 BOG 302 A 1 HETATM 9 C C5 BOG . . . D 4 0.828 -24.415 40.114 1 76.09 ? C5 BOG 302 A 1 HETATM 10 O O5 BOG . . . D 4 0.992 -23.489 41.198 1 71.02 ? O5 BOG 302 A 1 HETATM 11 C C6 BOG . . . D 4 -0.655 -24.69 39.889 1 77.53 ? C6 BOG 302 A 1 HETATM 12 O O6 BOG . . . D 4 -1.291 -23.491 39.432 1 80.06 ? O6 BOG 302 A 1 HETATM 13 C C1' BOG . . . D 4 1.791 -21.251 42.764 1 54.24 ? C1' BOG 302 A 1 HETATM 14 C C2' BOG . . . D 4 2.707 -20.264 43.476 1 49.84 ? C2' BOG 302 A 1 HETATM 15 C C3' BOG . . . D 4 3.939 -19.948 42.639 1 44.92 ? C3' BOG 302 A 1 HETATM 16 C C4' BOG . . . D 4 4.512 -18.616 43.094 1 37.49 ? C4' BOG 302 A 1 HETATM 17 C C5' BOG . . . D 4 5.532 -18.076 42.106 1 33.51 ? C5' BOG 302 A 1 HETATM 18 C C6' BOG . . . D 4 5.762 -16.578 42.31 1 29.19 ? C6' BOG 302 A 1 HETATM 19 C C7' BOG . . . D 4 6.852 -16.125 41.353 1 27.53 ? C7' BOG 302 A 1 HETATM 20 C C8' BOG . . . D 4 6.984 -14.63 41.241 1 20.93 ? C8' BOG 302 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 263 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 20 #