data_5JJF
#
_model_server_result.job_id            1BQEx9IgHQFMfVHFSB5a9Q 
_model_server_result.datetime_utc      '2024-11-18 09:36:20' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5jjf 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"P","auth_seq_id":203}' 
#
_entry.id    5JJF 
#
_exptl.entry_id    5JJF 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              282.547 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            EICOSANE 
_entity.pdbx_number_of_molecules    12 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5JJF 
_cell.length_a            49.558 
_cell.length_b            113.779 
_cell.length_c            125.387 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5JJF 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        24 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'I 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 7_556 -x+1/2,y,-z+1 -1 0 0 0 1 0 0 0 -1 24.779 0 125.387 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 E N N 
? 5 F N N 
? 5 G N N 
? 5 H N N 
? 5 I N N 
? 5 J N N 
? 5 K N N 
? 5 L N N 
? 5 M N N 
? 5 N N N 
? 5 O N N 
? 5 P N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A NZ LYS 204 A LYS 205 1_555 C C15 RET . A RET 301 1_555 ? G ? ? G ? ? ? ? ? ? ? 1.318 ? 
covale ? covale2 A NZ LYS 204 A LYS 205 1_555 C C15 RET . A RET 301 1_555 ? M ? ? M ? ? ? ? ? ? ? 1.258 ? 
#
_chem_comp.formula           'C20 H42' 
_chem_comp.formula_weight    282.547 
_chem_comp.id                LFA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              EICOSANE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'LIPID FRAGMENT' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 LFA sing 229 n n 
C1 H11 LFA sing 230 n n 
C1 H12 LFA sing 231 n n 
C1 H13 LFA sing 232 n n 
C2 C3 LFA sing 233 n n 
C2 H21 LFA sing 234 n n 
C2 H22 LFA sing 235 n n 
C3 C4 LFA sing 236 n n 
C3 H31 LFA sing 237 n n 
C3 H32 LFA sing 238 n n 
C4 C5 LFA sing 239 n n 
C4 H41 LFA sing 240 n n 
C4 H42 LFA sing 241 n n 
C5 C6 LFA sing 242 n n 
C5 H51 LFA sing 243 n n 
C5 H52 LFA sing 244 n n 
C6 C7 LFA sing 245 n n 
C6 H61 LFA sing 246 n n 
C6 H62 LFA sing 247 n n 
C7 C8 LFA sing 248 n n 
C7 H71 LFA sing 249 n n 
C7 H72 LFA sing 250 n n 
C8 C9 LFA sing 251 n n 
C8 H81 LFA sing 252 n n 
C8 H82 LFA sing 253 n n 
C9 C10 LFA sing 254 n n 
C9 H91 LFA sing 255 n n 
C9 H92 LFA sing 256 n n 
C10 C11 LFA sing 257 n n 
C10 H101 LFA sing 258 n n 
C10 H102 LFA sing 259 n n 
C11 C12 LFA sing 260 n n 
C11 H111 LFA sing 261 n n 
C11 H112 LFA sing 262 n n 
C12 C13 LFA sing 263 n n 
C12 H121 LFA sing 264 n n 
C12 H122 LFA sing 265 n n 
C13 C14 LFA sing 266 n n 
C13 H131 LFA sing 267 n n 
C13 H132 LFA sing 268 n n 
C14 C15 LFA sing 269 n n 
C14 H141 LFA sing 270 n n 
C14 H142 LFA sing 271 n n 
C15 C16 LFA sing 272 n n 
C15 H151 LFA sing 273 n n 
C15 H152 LFA sing 274 n n 
C16 C17 LFA sing 275 n n 
C16 H161 LFA sing 276 n n 
C16 H162 LFA sing 277 n n 
C17 C18 LFA sing 278 n n 
C17 H171 LFA sing 279 n n 
C17 H172 LFA sing 280 n n 
C18 C19 LFA sing 281 n n 
C18 H181 LFA sing 282 n n 
C18 H182 LFA sing 283 n n 
C19 C20 LFA sing 284 n n 
C19 H191 LFA sing 285 n n 
C19 H192 LFA sing 286 n n 
C20 H201 LFA sing 287 n n 
C20 H202 LFA sing 288 n n 
C20 H203 LFA sing 289 n n 
#
_atom_sites.entry_id                     5JJF 
_atom_sites.fract_transf_matrix[1][1]    0.020178 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008789 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007975 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 RET A 1 301 301 RET RET . 
D 4 BOG A 1 302 1 BOG BOG . 
E 5 LFA A 1 303 2 LFA LFA . 
F 5 LFA A 1 304 3 LFA LFA . 
G 5 LFA A 1 305 4 LFA LFA . 
H 5 LFA A 1 306 5 LFA LFA . 
I 5 LFA A 1 307 7 LFA LFA . 
J 5 LFA A 1 308 8 LFA LFA . 
K 5 LFA A 1 309 9 LFA LFA . 
L 5 LFA A 1 310 1 LFA LFA . 
M 5 LFA A 1 311 1 LFA LFA . 
N 5 LFA B 1 201 1 LFA LFA . 
O 5 LFA B 1 202 6 LFA LFA . 
P 5 LFA B 1 203 1 LFA LFA . 
Q 6 HOH A 1 401 29 HOH HOH . 
Q 6 HOH A 2 402 33 HOH HOH . 
Q 6 HOH A 3 403 97 HOH HOH . 
Q 6 HOH A 4 404 30 HOH HOH . 
Q 6 HOH A 5 405 8 HOH HOH . 
Q 6 HOH A 6 406 13 HOH HOH . 
Q 6 HOH A 7 407 90 HOH HOH . 
Q 6 HOH A 8 408 19 HOH HOH . 
Q 6 HOH A 9 409 57 HOH HOH . 
Q 6 HOH A 10 410 95 HOH HOH . 
Q 6 HOH A 11 411 106 HOH HOH . 
Q 6 HOH A 12 412 51 HOH HOH . 
Q 6 HOH A 13 413 16 HOH HOH . 
Q 6 HOH A 14 414 68 HOH HOH . 
Q 6 HOH A 15 415 27 HOH HOH . 
Q 6 HOH A 16 416 88 HOH HOH . 
Q 6 HOH A 17 417 34 HOH HOH . 
Q 6 HOH A 18 418 38 HOH HOH . 
Q 6 HOH A 19 419 110 HOH HOH . 
Q 6 HOH A 20 420 7 HOH HOH . 
Q 6 HOH A 21 421 20 HOH HOH . 
Q 6 HOH A 22 422 54 HOH HOH . 
Q 6 HOH A 23 423 2 HOH HOH . 
Q 6 HOH A 24 424 65 HOH HOH . 
Q 6 HOH A 25 425 47 HOH HOH . 
Q 6 HOH A 26 426 22 HOH HOH . 
Q 6 HOH A 27 427 85 HOH HOH . 
Q 6 HOH A 28 428 104 HOH HOH . 
Q 6 HOH A 29 429 112 HOH HOH . 
Q 6 HOH A 30 430 25 HOH HOH . 
Q 6 HOH A 31 431 96 HOH HOH . 
Q 6 HOH A 32 432 82 HOH HOH . 
Q 6 HOH A 33 433 49 HOH HOH . 
Q 6 HOH A 34 434 91 HOH HOH . 
Q 6 HOH A 35 435 50 HOH HOH . 
Q 6 HOH A 36 436 107 HOH HOH . 
Q 6 HOH A 37 437 93 HOH HOH . 
Q 6 HOH A 38 438 59 HOH HOH . 
Q 6 HOH A 39 439 52 HOH HOH . 
Q 6 HOH A 40 440 99 HOH HOH . 
Q 6 HOH A 41 441 114 HOH HOH . 
Q 6 HOH A 42 442 111 HOH HOH . 
Q 6 HOH A 43 443 87 HOH HOH . 
Q 6 HOH A 44 444 117 HOH HOH . 
Q 6 HOH A 45 445 43 HOH HOH . 
Q 6 HOH A 46 446 92 HOH HOH . 
R 6 HOH B 1 301 17 HOH HOH . 
R 6 HOH B 2 302 109 HOH HOH . 
R 6 HOH B 3 303 28 HOH HOH . 
R 6 HOH B 4 304 103 HOH HOH . 
R 6 HOH B 5 305 94 HOH HOH . 
R 6 HOH B 6 306 102 HOH HOH . 
R 6 HOH B 7 307 55 HOH HOH . 
R 6 HOH B 8 308 115 HOH HOH . 
R 6 HOH B 9 309 84 HOH HOH . 
R 6 HOH B 10 310 113 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 LFA . . . P 5 13.762 -13.63 53.421 1 73.69 ? C1 LFA 203 B 1 
HETATM 2 C C2 LFA . . . P 5 12.913 -12.859 52.434 1 75.48 ? C2 LFA 203 B 1 
HETATM 3 C C3 LFA . . . P 5 13.78 -12.147 51.399 1 76.17 ? C3 LFA 203 B 1 
HETATM 4 C C4 LFA . . . P 5 13.217 -10.767 51.077 1 77.79 ? C4 LFA 203 B 1 
HETATM 5 C C5 LFA . . . P 5 14.09 -10.021 50.075 1 75.73 ? C5 LFA 203 B 1 
HETATM 6 C C6 LFA . . . P 5 13.357 -8.802 49.524 1 74.55 ? C6 LFA 203 B 1 
HETATM 7 C C7 LFA . . . P 5 13.749 -7.512 50.239 1 76 ? C7 LFA 203 B 1 
HETATM 8 C C8 LFA . . . P 5 13.188 -6.295 49.505 1 68.24 ? C8 LFA 203 B 1 
HETATM 9 C C9 LFA . . . P 5 13.82 -4.989 49.981 1 60.15 ? C9 LFA 203 B 1 
HETATM 10 C C10 LFA . . . P 5 12.985 -3.779 49.57 1 55.09 ? C10 LFA 203 B 1 
HETATM 11 C C11 LFA . . . P 5 13.153 -3.413 48.097 1 49.39 ? C11 LFA 203 B 1 
HETATM 12 C C12 LFA . . . P 5 12.282 -2.214 47.747 1 40.12 ? C12 LFA 203 B 1 
HETATM 13 C C13 LFA . . . P 5 12.508 -1.726 46.32 1 49.03 ? C13 LFA 203 B 1 
HETATM 14 C C14 LFA . . . P 5 13.962 -1.351 46.038 1 57.14 ? C14 LFA 203 B 1 
HETATM 15 C C15 LFA . . . P 5 14.108 -0.693 44.665 1 56.24 ? C15 LFA 203 B 1 
HETATM 16 C C16 LFA . . . P 5 15.315 -1.232 43.904 1 52.83 ? C16 LFA 203 B 1 
#
_model_server_stats.io_time_ms              27 
_model_server_stats.parse_time_ms           21 
_model_server_stats.create_model_time_ms    41 
_model_server_stats.query_time_ms           383 
_model_server_stats.encode_time_ms          14 
_model_server_stats.element_count           16 
#