data_5JJF # _model_server_result.job_id xYmoJbhWlTlkItauv4DHiQ _model_server_result.datetime_utc '2024-11-18 09:30:09' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5jjf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":303}' # _entry.id 5JJF # _exptl.entry_id 5JJF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 282.547 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description EICOSANE _entity.pdbx_number_of_molecules 12 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5JJF _cell.length_a 49.558 _cell.length_b 113.779 _cell.length_c 125.387 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5JJF _symmetry.cell_setting ? _symmetry.Int_Tables_number 24 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 7_556 -x+1/2,y,-z+1 -1 0 0 0 1 0 0 0 -1 24.779 0 125.387 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 E N N ? 5 F N N ? 5 G N N ? 5 H N N ? 5 I N N ? 5 J N N ? 5 K N N ? 5 L N N ? 5 M N N ? 5 N N N ? 5 O N N ? 5 P N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A NZ LYS 204 A LYS 205 1_555 C C15 RET . A RET 301 1_555 ? G ? ? G ? ? ? ? ? ? ? 1.318 ? covale ? covale2 A NZ LYS 204 A LYS 205 1_555 C C15 RET . A RET 301 1_555 ? M ? ? M ? ? ? ? ? ? ? 1.258 ? # _chem_comp.formula 'C20 H42' _chem_comp.formula_weight 282.547 _chem_comp.id LFA _chem_comp.mon_nstd_flag . _chem_comp.name EICOSANE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'LIPID FRAGMENT' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 LFA sing 229 n n C1 H11 LFA sing 230 n n C1 H12 LFA sing 231 n n C1 H13 LFA sing 232 n n C2 C3 LFA sing 233 n n C2 H21 LFA sing 234 n n C2 H22 LFA sing 235 n n C3 C4 LFA sing 236 n n C3 H31 LFA sing 237 n n C3 H32 LFA sing 238 n n C4 C5 LFA sing 239 n n C4 H41 LFA sing 240 n n C4 H42 LFA sing 241 n n C5 C6 LFA sing 242 n n C5 H51 LFA sing 243 n n C5 H52 LFA sing 244 n n C6 C7 LFA sing 245 n n C6 H61 LFA sing 246 n n C6 H62 LFA sing 247 n n C7 C8 LFA sing 248 n n C7 H71 LFA sing 249 n n C7 H72 LFA sing 250 n n C8 C9 LFA sing 251 n n C8 H81 LFA sing 252 n n C8 H82 LFA sing 253 n n C9 C10 LFA sing 254 n n C9 H91 LFA sing 255 n n C9 H92 LFA sing 256 n n C10 C11 LFA sing 257 n n C10 H101 LFA sing 258 n n C10 H102 LFA sing 259 n n C11 C12 LFA sing 260 n n C11 H111 LFA sing 261 n n C11 H112 LFA sing 262 n n C12 C13 LFA sing 263 n n C12 H121 LFA sing 264 n n C12 H122 LFA sing 265 n n C13 C14 LFA sing 266 n n C13 H131 LFA sing 267 n n C13 H132 LFA sing 268 n n C14 C15 LFA sing 269 n n C14 H141 LFA sing 270 n n C14 H142 LFA sing 271 n n C15 C16 LFA sing 272 n n C15 H151 LFA sing 273 n n C15 H152 LFA sing 274 n n C16 C17 LFA sing 275 n n C16 H161 LFA sing 276 n n C16 H162 LFA sing 277 n n C17 C18 LFA sing 278 n n C17 H171 LFA sing 279 n n C17 H172 LFA sing 280 n n C18 C19 LFA sing 281 n n C18 H181 LFA sing 282 n n C18 H182 LFA sing 283 n n C19 C20 LFA sing 284 n n C19 H191 LFA sing 285 n n C19 H192 LFA sing 286 n n C20 H201 LFA sing 287 n n C20 H202 LFA sing 288 n n C20 H203 LFA sing 289 n n # _atom_sites.entry_id 5JJF _atom_sites.fract_transf_matrix[1][1] 0.020178 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008789 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007975 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 RET A 1 301 301 RET RET . D 4 BOG A 1 302 1 BOG BOG . E 5 LFA A 1 303 2 LFA LFA . F 5 LFA A 1 304 3 LFA LFA . G 5 LFA A 1 305 4 LFA LFA . H 5 LFA A 1 306 5 LFA LFA . I 5 LFA A 1 307 7 LFA LFA . J 5 LFA A 1 308 8 LFA LFA . K 5 LFA A 1 309 9 LFA LFA . L 5 LFA A 1 310 1 LFA LFA . M 5 LFA A 1 311 1 LFA LFA . N 5 LFA B 1 201 1 LFA LFA . O 5 LFA B 1 202 6 LFA LFA . P 5 LFA B 1 203 1 LFA LFA . Q 6 HOH A 1 401 29 HOH HOH . Q 6 HOH A 2 402 33 HOH HOH . Q 6 HOH A 3 403 97 HOH HOH . Q 6 HOH A 4 404 30 HOH HOH . Q 6 HOH A 5 405 8 HOH HOH . Q 6 HOH A 6 406 13 HOH HOH . Q 6 HOH A 7 407 90 HOH HOH . Q 6 HOH A 8 408 19 HOH HOH . Q 6 HOH A 9 409 57 HOH HOH . Q 6 HOH A 10 410 95 HOH HOH . Q 6 HOH A 11 411 106 HOH HOH . Q 6 HOH A 12 412 51 HOH HOH . Q 6 HOH A 13 413 16 HOH HOH . Q 6 HOH A 14 414 68 HOH HOH . Q 6 HOH A 15 415 27 HOH HOH . Q 6 HOH A 16 416 88 HOH HOH . Q 6 HOH A 17 417 34 HOH HOH . Q 6 HOH A 18 418 38 HOH HOH . Q 6 HOH A 19 419 110 HOH HOH . Q 6 HOH A 20 420 7 HOH HOH . Q 6 HOH A 21 421 20 HOH HOH . Q 6 HOH A 22 422 54 HOH HOH . Q 6 HOH A 23 423 2 HOH HOH . Q 6 HOH A 24 424 65 HOH HOH . Q 6 HOH A 25 425 47 HOH HOH . Q 6 HOH A 26 426 22 HOH HOH . Q 6 HOH A 27 427 85 HOH HOH . Q 6 HOH A 28 428 104 HOH HOH . Q 6 HOH A 29 429 112 HOH HOH . Q 6 HOH A 30 430 25 HOH HOH . Q 6 HOH A 31 431 96 HOH HOH . Q 6 HOH A 32 432 82 HOH HOH . Q 6 HOH A 33 433 49 HOH HOH . Q 6 HOH A 34 434 91 HOH HOH . Q 6 HOH A 35 435 50 HOH HOH . Q 6 HOH A 36 436 107 HOH HOH . Q 6 HOH A 37 437 93 HOH HOH . Q 6 HOH A 38 438 59 HOH HOH . Q 6 HOH A 39 439 52 HOH HOH . Q 6 HOH A 40 440 99 HOH HOH . Q 6 HOH A 41 441 114 HOH HOH . Q 6 HOH A 42 442 111 HOH HOH . Q 6 HOH A 43 443 87 HOH HOH . Q 6 HOH A 44 444 117 HOH HOH . Q 6 HOH A 45 445 43 HOH HOH . Q 6 HOH A 46 446 92 HOH HOH . R 6 HOH B 1 301 17 HOH HOH . R 6 HOH B 2 302 109 HOH HOH . R 6 HOH B 3 303 28 HOH HOH . R 6 HOH B 4 304 103 HOH HOH . R 6 HOH B 5 305 94 HOH HOH . R 6 HOH B 6 306 102 HOH HOH . R 6 HOH B 7 307 55 HOH HOH . R 6 HOH B 8 308 115 HOH HOH . R 6 HOH B 9 309 84 HOH HOH . R 6 HOH B 10 310 113 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 LFA . . . E 5 -9.303 -17.005 61.43 0.49 22.76 ? C1 LFA 303 A 1 HETATM 2 C C2 LFA . . . E 5 -9.778 -16.11 62.556 0.49 32.6 ? C2 LFA 303 A 1 HETATM 3 C C3 LFA . . . E 5 -10.493 -14.879 62.011 0.49 33.16 ? C3 LFA 303 A 1 HETATM 4 C C4 LFA . . . E 5 -9.677 -13.62 62.272 0.49 30.65 ? C4 LFA 303 A 1 HETATM 5 C C5 LFA . . . E 5 -10.526 -12.362 62.111 0.49 19.47 ? C5 LFA 303 A 1 HETATM 6 C C6 LFA . . . E 5 -9.657 -11.114 62.184 0.49 18.61 ? C6 LFA 303 A 1 HETATM 7 C C7 LFA . . . E 5 -10.495 -9.849 62.328 0.49 32.55 ? C7 LFA 303 A 1 HETATM 8 C C8 LFA . . . E 5 -9.777 -8.668 61.697 0.49 23.87 ? C8 LFA 303 A 1 HETATM 9 C C9 LFA . . . E 5 -10.443 -7.356 62.082 0.49 33.14 ? C9 LFA 303 A 1 HETATM 10 C C10 LFA . . . E 5 -10.039 -6.24 61.127 0.49 30.99 ? C10 LFA 303 A 1 # _model_server_stats.io_time_ms 135 _model_server_stats.parse_time_ms 145 _model_server_stats.create_model_time_ms 26 _model_server_stats.query_time_ms 328 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 10 #