data_5JJJ # _model_server_result.job_id nA8vuu6TBn12j8NYF27KQQ _model_server_result.datetime_utc '2024-11-18 12:38:24' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5jjj # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":307}' # _entry.id 5JJJ # _exptl.entry_id 5JJJ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 282.547 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description EICOSANE _entity.pdbx_number_of_molecules 8 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5JJJ _cell.length_a 66.31 _cell.length_b 66.31 _cell.length_c 170.081 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5JJJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 172 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 64' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_565 -x,-y+1,z -1 0 0 0 -1 0 0 0 1 -33.155 57.426145 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N ? 4 F N N ? 4 G N N ? 4 H N N ? 4 I N N ? 4 J N N ? 4 K N N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id NZ _struct_conn.ptnr1_label_comp_id LYS _struct_conn.ptnr1_label_seq_id 204 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id LYS _struct_conn.ptnr1_auth_seq_id 205 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id C _struct_conn.ptnr2_label_atom_id C15 _struct_conn.ptnr2_label_comp_id RET _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id RET _struct_conn.ptnr2_auth_seq_id 301 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.472 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C20 H42' _chem_comp.formula_weight 282.547 _chem_comp.id LFA _chem_comp.mon_nstd_flag . _chem_comp.name EICOSANE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'LIPID FRAGMENT' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 LFA sing 181 n n C1 H11 LFA sing 182 n n C1 H12 LFA sing 183 n n C1 H13 LFA sing 184 n n C2 C3 LFA sing 185 n n C2 H21 LFA sing 186 n n C2 H22 LFA sing 187 n n C3 C4 LFA sing 188 n n C3 H31 LFA sing 189 n n C3 H32 LFA sing 190 n n C4 C5 LFA sing 191 n n C4 H41 LFA sing 192 n n C4 H42 LFA sing 193 n n C5 C6 LFA sing 194 n n C5 H51 LFA sing 195 n n C5 H52 LFA sing 196 n n C6 C7 LFA sing 197 n n C6 H61 LFA sing 198 n n C6 H62 LFA sing 199 n n C7 C8 LFA sing 200 n n C7 H71 LFA sing 201 n n C7 H72 LFA sing 202 n n C8 C9 LFA sing 203 n n C8 H81 LFA sing 204 n n C8 H82 LFA sing 205 n n C9 C10 LFA sing 206 n n C9 H91 LFA sing 207 n n C9 H92 LFA sing 208 n n C10 C11 LFA sing 209 n n C10 H101 LFA sing 210 n n C10 H102 LFA sing 211 n n C11 C12 LFA sing 212 n n C11 H111 LFA sing 213 n n C11 H112 LFA sing 214 n n C12 C13 LFA sing 215 n n C12 H121 LFA sing 216 n n C12 H122 LFA sing 217 n n C13 C14 LFA sing 218 n n C13 H131 LFA sing 219 n n C13 H132 LFA sing 220 n n C14 C15 LFA sing 221 n n C14 H141 LFA sing 222 n n C14 H142 LFA sing 223 n n C15 C16 LFA sing 224 n n C15 H151 LFA sing 225 n n C15 H152 LFA sing 226 n n C16 C17 LFA sing 227 n n C16 H161 LFA sing 228 n n C16 H162 LFA sing 229 n n C17 C18 LFA sing 230 n n C17 H171 LFA sing 231 n n C17 H172 LFA sing 232 n n C18 C19 LFA sing 233 n n C18 H181 LFA sing 234 n n C18 H182 LFA sing 235 n n C19 C20 LFA sing 236 n n C19 H191 LFA sing 237 n n C19 H192 LFA sing 238 n n C20 H201 LFA sing 239 n n C20 H202 LFA sing 240 n n C20 H203 LFA sing 241 n n # _atom_sites.entry_id 5JJJ _atom_sites.fract_transf_matrix[1][1] 0.015081 _atom_sites.fract_transf_matrix[1][2] 0.008707 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017414 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00588 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 RET A 1 301 305 RET RET . D 4 LFA A 1 302 1 LFA LFA . E 4 LFA A 1 303 2 LFA LFA . F 4 LFA A 1 304 3 LFA LFA . G 4 LFA A 1 305 4 LFA LFA . H 4 LFA A 1 306 5 LFA LFA . I 4 LFA A 1 307 6 LFA LFA . J 4 LFA A 1 308 7 LFA LFA . K 4 LFA A 1 309 8 LFA LFA . L 5 HOH A 1 401 8 HOH HOH . L 5 HOH A 2 402 47 HOH HOH . L 5 HOH A 3 403 99 HOH HOH . L 5 HOH A 4 404 17 HOH HOH . L 5 HOH A 5 405 85 HOH HOH . L 5 HOH A 6 406 30 HOH HOH . L 5 HOH A 7 407 34 HOH HOH . L 5 HOH A 8 408 16 HOH HOH . L 5 HOH A 9 409 107 HOH HOH . L 5 HOH A 10 410 57 HOH HOH . L 5 HOH A 11 411 7 HOH HOH . L 5 HOH A 12 412 25 HOH HOH . L 5 HOH A 13 413 2 HOH HOH . L 5 HOH A 14 414 111 HOH HOH . L 5 HOH A 15 415 90 HOH HOH . L 5 HOH A 16 416 38 HOH HOH . L 5 HOH A 17 417 59 HOH HOH . L 5 HOH A 18 418 27 HOH HOH . L 5 HOH A 19 419 82 HOH HOH . L 5 HOH A 20 420 91 HOH HOH . L 5 HOH A 21 421 114 HOH HOH . L 5 HOH A 22 422 65 HOH HOH . L 5 HOH A 23 423 93 HOH HOH . L 5 HOH A 24 424 43 HOH HOH . M 5 HOH B 1 201 109 HOH HOH . M 5 HOH B 2 202 113 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 LFA . . . I 4 -23.946 37.603 5.869 1 86.93 ? C1 LFA 307 A 1 HETATM 2 C C2 LFA . . . I 4 -25.44 37.555 5.881 1 87.67 ? C2 LFA 307 A 1 HETATM 3 C C3 LFA . . . I 4 -26.172 38.207 4.751 1 86.99 ? C3 LFA 307 A 1 HETATM 4 C C4 LFA . . . I 4 -27.644 37.972 4.63 1 82.56 ? C4 LFA 307 A 1 HETATM 5 C C5 LFA . . . I 4 -28.376 38.683 3.54 1 84.53 ? C5 LFA 307 A 1 HETATM 6 C C6 LFA . . . I 4 -29.871 38.685 3.577 1 84.3 ? C6 LFA 307 A 1 HETATM 7 C C7 LFA . . . I 4 -30.574 39.986 3.379 1 82.41 ? C7 LFA 307 A 1 HETATM 8 C C8 LFA . . . I 4 -31.53 40.105 2.239 1 85.35 ? C8 LFA 307 A 1 HETATM 9 C C9 LFA . . . I 4 -31.013 39.994 0.843 1 84.36 ? C9 LFA 307 A 1 HETATM 10 C C10 LFA . . . I 4 -31.915 39.428 -0.208 1 81.01 ? C10 LFA 307 A 1 HETATM 11 C C11 LFA . . . I 4 -32.384 40.347 -1.286 1 77.89 ? C11 LFA 307 A 1 HETATM 12 C C12 LFA . . . I 4 -33.199 39.8 -2.408 1 72.03 ? C12 LFA 307 A 1 HETATM 13 C C13 LFA . . . I 4 -33.438 40.714 -3.567 1 73.91 ? C13 LFA 307 A 1 HETATM 14 C C14 LFA . . . I 4 -32.253 41.187 -4.344 1 70.8 ? C14 LFA 307 A 1 HETATM 15 C C15 LFA . . . I 4 -32.446 42.323 -5.292 1 67.3 ? C15 LFA 307 A 1 HETATM 16 C C16 LFA . . . I 4 -31.434 42.521 -6.372 1 64.03 ? C16 LFA 307 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 264 _model_server_stats.encode_time_ms 15 _model_server_stats.element_count 16 #