data_5JJM
#
_model_server_result.job_id            X52cplpno7-XEtBvmKb0kA 
_model_server_result.datetime_utc      '2024-11-16 16:25:49' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5jjm 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"X","auth_seq_id":1006}' 
#
_entry.id    5JJM 
#
_exptl.entry_id    5JJM 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          8 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    8 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90.07 
_cell.angle_gamma         90 
_cell.entry_id            5JJM 
_cell.length_a            91.09 
_cell.length_b            91.01 
_cell.length_c            157.23 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5JJM 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? hexameric 6 author_defined_assembly 1 
? hexameric 6 author_defined_assembly 2 
? hexameric 6 author_defined_assembly 3 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,I,M,N,O,P,Q,R,OA 1 1 
A,B,I,M,N,O,P,Q,R,OA 1 2 
C,D,E,F,J,K,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,PA,QA 2 1 
G,H,L,GA,HA,IA,JA,KA,LA,MA,NA,RA 3 1 
G,H,L,GA,HA,IA,JA,KA,LA,MA,NA,RA 3 3 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_455 -x-1,y,-z -1 0 0 0 1 0 0 0 -1 -91.09 0 0 
3 'crystal symmetry operation' 2_456 -x-1,y,-z+1 -1 0 0 0 1 0 0 0 -1 -91.282093 0 157.229883 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 8 P N N 
? 8 V N N 
? 8 W N N 
? 8 X N N 
? 8 BA N N 
? 8 JA N N 
? 8 KA N N 
? 8 MA N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 B C FME 1 M FME 503 1_555 B N SER 2 M SER 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? 
covale ? covale2 C C VAL 18 B VAL 685 1_555 C N SNC 19 B SNC 686 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.542 ? 
covale ? covale3 C C SNC 19 B SNC 686 1_555 C N ALA 20 B ALA 687 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? 
covale ? covale4 D C FME 1 F FME 503 1_555 D N SER 2 F SER 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale5 F C FME 1 K FME 503 1_555 F N SER 2 K SER 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.341 ? 
covale ? covale6 H C FME 1 L FME 503 1_555 H N SER 2 L SER 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
metalc ? metalc1 A SG CYS 185 A CYS 852 1_555 N ZN ZN . A ZN 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.234 ? 
metalc ? metalc2 N ZN ZN . A ZN 1002 1_555 B O1 FME 1 M FME 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.646 ? 
metalc ? metalc3 C SG CYS 185 B CYS 852 1_555 T ZN ZN . B ZN 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.28 ? 
metalc ? metalc4 T ZN ZN . B ZN 1002 1_555 D O1 FME 1 F FME 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.263 ? 
metalc ? metalc5 E SG CYS 185 C CYS 852 1_555 AA ZN ZN . C ZN 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.405 ? 
metalc ? metalc6 AA ZN ZN . C ZN 1002 1_555 F N FME 1 K FME 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.367 ? 
metalc ? metalc7 AA ZN ZN . C ZN 1002 1_555 F O1 FME 1 K FME 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.636 ? 
metalc ? metalc8 G SG CYS 185 D CYS 852 1_555 GA ZN ZN . D ZN 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.299 ? 
metalc ? metalc9 GA ZN ZN . D ZN 1002 1_555 H O1 FME 1 L FME 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.464 ? 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 143 n n 
C1 C2 EDO sing 144 n n 
C1 H11 EDO sing 145 n n 
C1 H12 EDO sing 146 n n 
O1 HO1 EDO sing 147 n n 
C2 O2 EDO sing 148 n n 
C2 H21 EDO sing 149 n n 
C2 H22 EDO sing 150 n n 
O2 HO2 EDO sing 151 n n 
#
_atom_sites.entry_id                     5JJM 
_atom_sites.fract_transf_matrix[1][1]    0.010978 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.000013 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010988 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.00636 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
M 5 DHT A 1 1001 2666 DHT DHT . 
N 6 ZN A 1 1002 502 ZN ZN . 
O 7 CL A 1 1003 1804 CL CL . 
P 8 EDO A 1 1004 1906 EDO EDO . 
Q 9 GOL A 1 1005 2003 GOL GOL . 
R 10 SO4 A 1 1006 6001 SO4 SO4 . 
S 5 DHT B 1 1001 2666 DHT DHT . 
T 6 ZN B 1 1002 502 ZN ZN . 
U 7 CL B 1 1003 1802 CL CL . 
V 8 EDO B 1 1004 1901 EDO EDO . 
W 8 EDO B 1 1005 1903 EDO EDO . 
X 8 EDO B 1 1006 1909 EDO EDO . 
Y 10 SO4 B 1 1007 6004 SO4 SO4 . 
Z 5 DHT C 1 1001 2666 DHT DHT . 
AA 6 ZN C 1 1002 502 ZN ZN . 
BA 8 EDO C 1 1003 1907 EDO EDO . 
CA 9 GOL C 1 1004 2002 GOL GOL . 
DA 11 PGE C 1 1005 3001 PGE PGE . 
EA 10 SO4 C 1 1006 6002 SO4 SO4 . 
FA 10 SO4 C 1 1007 6005 SO4 SO4 . 
GA 6 ZN D 1 1002 502 ZN ZN . 
HA 5 DHT D 1 1001 2666 DHT DHT . 
IA 7 CL D 1 1003 1803 CL CL . 
JA 8 EDO D 1 1004 1902 EDO EDO . 
KA 8 EDO D 1 1005 1908 EDO EDO . 
LA 12 ACT D 1 1006 1601 ACT ACT . 
MA 8 EDO D 1 1007 1904 EDO EDO . 
NA 10 SO4 D 1 1008 6003 SO4 SO4 . 
OA 13 HOH A 1 1101 4079 HOH HOH . 
OA 13 HOH A 2 1102 4015 HOH HOH . 
OA 13 HOH A 3 1103 4017 HOH HOH . 
OA 13 HOH A 4 1104 4011 HOH HOH . 
OA 13 HOH A 5 1105 4016 HOH HOH . 
OA 13 HOH A 6 1106 4092 HOH HOH . 
OA 13 HOH A 7 1107 4094 HOH HOH . 
OA 13 HOH A 8 1108 4003 HOH HOH . 
OA 13 HOH A 9 1109 4073 HOH HOH . 
OA 13 HOH A 10 1110 4097 HOH HOH . 
OA 13 HOH A 11 1111 4083 HOH HOH . 
OA 13 HOH A 12 1112 4012 HOH HOH . 
OA 13 HOH A 13 1113 4014 HOH HOH . 
OA 13 HOH A 14 1114 4043 HOH HOH . 
OA 13 HOH A 15 1115 4086 HOH HOH . 
OA 13 HOH A 16 1116 4007 HOH HOH . 
OA 13 HOH A 17 1117 4098 HOH HOH . 
OA 13 HOH A 18 1118 4075 HOH HOH . 
OA 13 HOH A 19 1119 4074 HOH HOH . 
OA 13 HOH A 20 1120 4009 HOH HOH . 
OA 13 HOH A 21 1121 4087 HOH HOH . 
OA 13 HOH A 22 1122 4006 HOH HOH . 
OA 13 HOH A 23 1123 4055 HOH HOH . 
OA 13 HOH A 24 1124 4050 HOH HOH . 
OA 13 HOH A 25 1125 4001 HOH HOH . 
OA 13 HOH A 26 1126 4072 HOH HOH . 
PA 13 HOH B 1 1101 4031 HOH HOH . 
PA 13 HOH B 2 1102 4029 HOH HOH . 
PA 13 HOH B 3 1103 4088 HOH HOH . 
PA 13 HOH B 4 1104 4013 HOH HOH . 
PA 13 HOH B 5 1105 4063 HOH HOH . 
PA 13 HOH B 6 1106 4047 HOH HOH . 
PA 13 HOH B 7 1107 4010 HOH HOH . 
PA 13 HOH B 8 1108 4051 HOH HOH . 
PA 13 HOH B 9 1109 4052 HOH HOH . 
PA 13 HOH B 10 1110 4040 HOH HOH . 
PA 13 HOH B 11 1111 4058 HOH HOH . 
PA 13 HOH B 12 1112 4046 HOH HOH . 
PA 13 HOH B 13 1113 4026 HOH HOH . 
PA 13 HOH B 14 1114 4091 HOH HOH . 
PA 13 HOH B 15 1115 4044 HOH HOH . 
PA 13 HOH B 16 1116 4045 HOH HOH . 
PA 13 HOH B 17 1117 4059 HOH HOH . 
PA 13 HOH B 18 1118 4030 HOH HOH . 
PA 13 HOH B 19 1119 4095 HOH HOH . 
PA 13 HOH B 20 1120 4032 HOH HOH . 
PA 13 HOH B 21 1121 4049 HOH HOH . 
QA 13 HOH C 1 1101 4020 HOH HOH . 
QA 13 HOH C 2 1102 4060 HOH HOH . 
QA 13 HOH C 3 1103 4068 HOH HOH . 
QA 13 HOH C 4 1104 4089 HOH HOH . 
QA 13 HOH C 5 1105 4069 HOH HOH . 
QA 13 HOH C 6 1106 4067 HOH HOH . 
QA 13 HOH C 7 1107 4061 HOH HOH . 
QA 13 HOH C 8 1108 4034 HOH HOH . 
QA 13 HOH C 9 1109 4057 HOH HOH . 
QA 13 HOH C 10 1110 4078 HOH HOH . 
QA 13 HOH C 11 1111 4076 HOH HOH . 
QA 13 HOH C 12 1112 4081 HOH HOH . 
QA 13 HOH C 13 1113 4028 HOH HOH . 
QA 13 HOH C 14 1114 4066 HOH HOH . 
QA 13 HOH C 15 1115 4096 HOH HOH . 
QA 13 HOH C 16 1116 4080 HOH HOH . 
QA 13 HOH C 17 1117 4064 HOH HOH . 
QA 13 HOH C 18 1118 4071 HOH HOH . 
QA 13 HOH C 19 1119 4062 HOH HOH . 
QA 13 HOH C 20 1120 4035 HOH HOH . 
QA 13 HOH C 21 1121 4041 HOH HOH . 
QA 13 HOH C 22 1122 4004 HOH HOH . 
QA 13 HOH C 23 1123 4005 HOH HOH . 
QA 13 HOH C 24 1124 4065 HOH HOH . 
QA 13 HOH C 25 1125 4018 HOH HOH . 
QA 13 HOH C 26 1126 4024 HOH HOH . 
QA 13 HOH C 27 1127 4023 HOH HOH . 
QA 13 HOH C 28 1128 4070 HOH HOH . 
RA 13 HOH D 1 1101 4090 HOH HOH . 
RA 13 HOH D 2 1102 4077 HOH HOH . 
RA 13 HOH D 3 1103 4053 HOH HOH . 
RA 13 HOH D 4 1104 4037 HOH HOH . 
RA 13 HOH D 5 1105 4085 HOH HOH . 
RA 13 HOH D 6 1106 4054 HOH HOH . 
RA 13 HOH D 7 1107 4002 HOH HOH . 
RA 13 HOH D 8 1108 4022 HOH HOH . 
RA 13 HOH D 9 1109 4048 HOH HOH . 
RA 13 HOH D 10 1110 4038 HOH HOH . 
RA 13 HOH D 11 1111 4025 HOH HOH . 
RA 13 HOH D 12 1112 4084 HOH HOH . 
RA 13 HOH D 13 1113 4019 HOH HOH . 
RA 13 HOH D 14 1114 4039 HOH HOH . 
RA 13 HOH D 15 1115 4093 HOH HOH . 
RA 13 HOH D 16 1116 4033 HOH HOH . 
RA 13 HOH D 17 1117 4021 HOH HOH . 
RA 13 HOH D 18 1118 4099 HOH HOH . 
RA 13 HOH D 19 1119 4036 HOH HOH . 
RA 13 HOH D 20 1120 4027 HOH HOH . 
RA 13 HOH D 21 1121 4042 HOH HOH . 
RA 13 HOH D 22 1122 4056 HOH HOH . 
RA 13 HOH D 23 1123 4082 HOH HOH . 
RA 13 HOH D 24 1124 4008 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . X 8 -25.307 6.918 34.543 1 60.13 ? C1 EDO 1006 B 1 
HETATM 2 O O1 EDO . . . X 8 -26.028 6.251 35.585 1 54.87 ? O1 EDO 1006 B 1 
HETATM 3 C C2 EDO . . . X 8 -24.839 8.223 35.215 1 63.33 ? C2 EDO 1006 B 1 
HETATM 4 O O2 EDO . . . X 8 -24.139 7.924 36.471 1 60.86 ? O2 EDO 1006 B 1 
#
_model_server_stats.io_time_ms              23 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    15 
_model_server_stats.query_time_ms           301 
_model_server_stats.encode_time_ms          14 
_model_server_stats.element_count           4 
#