data_5JJN
#
_model_server_result.job_id            5iJg8P0a2JYIaYTrH8kCbw 
_model_server_result.datetime_utc      '2024-11-14 23:43:12' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5jjn 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":304}' 
#
_entry.id    5JJN 
#
_exptl.entry_id    5JJN 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              282.547 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            EICOSANE 
_entity.pdbx_number_of_molecules    15 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5JJN 
_cell.length_a            47.131 
_cell.length_b            109.096 
_cell.length_c            121.818 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5JJN 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 E N N 
? 3 F N N 
? 3 G N N 
? 3 H N N 
? 3 I N N 
? 3 J N N 
? 3 K N N 
? 3 L N N 
? 3 O N N 
? 3 P N N 
? 3 Q N N 
? 3 R N N 
? 3 S N N 
? 3 U N N 
? 3 W N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A NZ LYS 204 A LYS 205 1_555 N C15 RET . A RET 310 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.47 ? 
covale ? covale2 C NZ LYS 204 C LYS 205 1_555 V C15 RET . C RET 307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.471 ? 
#
_chem_comp.formula           'C20 H42' 
_chem_comp.formula_weight    282.547 
_chem_comp.id                LFA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              EICOSANE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'LIPID FRAGMENT' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 LFA sing 229 n n 
C1 H11 LFA sing 230 n n 
C1 H12 LFA sing 231 n n 
C1 H13 LFA sing 232 n n 
C2 C3 LFA sing 233 n n 
C2 H21 LFA sing 234 n n 
C2 H22 LFA sing 235 n n 
C3 C4 LFA sing 236 n n 
C3 H31 LFA sing 237 n n 
C3 H32 LFA sing 238 n n 
C4 C5 LFA sing 239 n n 
C4 H41 LFA sing 240 n n 
C4 H42 LFA sing 241 n n 
C5 C6 LFA sing 242 n n 
C5 H51 LFA sing 243 n n 
C5 H52 LFA sing 244 n n 
C6 C7 LFA sing 245 n n 
C6 H61 LFA sing 246 n n 
C6 H62 LFA sing 247 n n 
C7 C8 LFA sing 248 n n 
C7 H71 LFA sing 249 n n 
C7 H72 LFA sing 250 n n 
C8 C9 LFA sing 251 n n 
C8 H81 LFA sing 252 n n 
C8 H82 LFA sing 253 n n 
C9 C10 LFA sing 254 n n 
C9 H91 LFA sing 255 n n 
C9 H92 LFA sing 256 n n 
C10 C11 LFA sing 257 n n 
C10 H101 LFA sing 258 n n 
C10 H102 LFA sing 259 n n 
C11 C12 LFA sing 260 n n 
C11 H111 LFA sing 261 n n 
C11 H112 LFA sing 262 n n 
C12 C13 LFA sing 263 n n 
C12 H121 LFA sing 264 n n 
C12 H122 LFA sing 265 n n 
C13 C14 LFA sing 266 n n 
C13 H131 LFA sing 267 n n 
C13 H132 LFA sing 268 n n 
C14 C15 LFA sing 269 n n 
C14 H141 LFA sing 270 n n 
C14 H142 LFA sing 271 n n 
C15 C16 LFA sing 272 n n 
C15 H151 LFA sing 273 n n 
C15 H152 LFA sing 274 n n 
C16 C17 LFA sing 275 n n 
C16 H161 LFA sing 276 n n 
C16 H162 LFA sing 277 n n 
C17 C18 LFA sing 278 n n 
C17 H171 LFA sing 279 n n 
C17 H172 LFA sing 280 n n 
C18 C19 LFA sing 281 n n 
C18 H181 LFA sing 282 n n 
C18 H182 LFA sing 283 n n 
C19 C20 LFA sing 284 n n 
C19 H191 LFA sing 285 n n 
C19 H192 LFA sing 286 n n 
C20 H201 LFA sing 287 n n 
C20 H202 LFA sing 288 n n 
C20 H203 LFA sing 289 n n 
#
_atom_sites.entry_id                     5JJN 
_atom_sites.fract_transf_matrix[1][1]    0.021217 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009166 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008209 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 3 LFA A 1 301 302 LFA LFA . 
F 3 LFA A 1 302 303 LFA LFA . 
G 3 LFA A 1 303 304 LFA LFA . 
H 3 LFA A 1 304 305 LFA LFA . 
I 3 LFA A 1 305 306 LFA LFA . 
J 3 LFA A 1 306 307 LFA LFA . 
K 3 LFA A 1 307 308 LFA LFA . 
L 3 LFA A 1 308 309 LFA LFA . 
M 4 BOG A 1 309 310 BOG BOG . 
N 5 RET A 1 310 311 RET RET . 
O 3 LFA A 1 311 303 LFA LFA . 
P 3 LFA C 1 301 301 LFA LFA . 
Q 3 LFA C 1 302 301 LFA LFA . 
R 3 LFA C 1 303 302 LFA LFA . 
S 3 LFA C 1 304 304 LFA LFA . 
T 4 BOG C 1 305 305 BOG BOG . 
U 3 LFA C 1 306 306 LFA LFA . 
V 5 RET C 1 307 307 RET RET . 
W 3 LFA D 1 201 201 LFA LFA . 
X 6 HOH A 1 401 415 HOH HOH . 
X 6 HOH A 2 402 447 HOH HOH . 
X 6 HOH A 3 403 409 HOH HOH . 
X 6 HOH A 4 404 430 HOH HOH . 
X 6 HOH A 5 405 418 HOH HOH . 
X 6 HOH A 6 406 403 HOH HOH . 
X 6 HOH A 7 407 417 HOH HOH . 
X 6 HOH A 8 408 408 HOH HOH . 
X 6 HOH A 9 409 440 HOH HOH . 
X 6 HOH A 10 410 405 HOH HOH . 
X 6 HOH A 11 411 414 HOH HOH . 
X 6 HOH A 12 412 404 HOH HOH . 
X 6 HOH A 13 413 421 HOH HOH . 
X 6 HOH A 14 414 401 HOH HOH . 
X 6 HOH A 15 415 445 HOH HOH . 
X 6 HOH A 16 416 437 HOH HOH . 
X 6 HOH A 17 417 406 HOH HOH . 
X 6 HOH A 18 418 419 HOH HOH . 
X 6 HOH A 19 419 416 HOH HOH . 
X 6 HOH A 20 420 410 HOH HOH . 
X 6 HOH A 21 421 413 HOH HOH . 
X 6 HOH A 22 422 428 HOH HOH . 
X 6 HOH A 23 423 411 HOH HOH . 
X 6 HOH A 24 424 412 HOH HOH . 
X 6 HOH A 25 425 434 HOH HOH . 
X 6 HOH A 26 426 429 HOH HOH . 
X 6 HOH A 27 427 425 HOH HOH . 
X 6 HOH A 28 428 441 HOH HOH . 
X 6 HOH A 29 429 423 HOH HOH . 
X 6 HOH A 30 430 427 HOH HOH . 
X 6 HOH A 31 431 435 HOH HOH . 
X 6 HOH A 32 432 402 HOH HOH . 
X 6 HOH A 33 433 436 HOH HOH . 
X 6 HOH A 34 434 407 HOH HOH . 
X 6 HOH A 35 435 422 HOH HOH . 
X 6 HOH A 36 436 420 HOH HOH . 
X 6 HOH A 37 437 442 HOH HOH . 
X 6 HOH A 38 438 426 HOH HOH . 
X 6 HOH A 39 439 432 HOH HOH . 
X 6 HOH A 40 440 433 HOH HOH . 
X 6 HOH A 41 441 423 HOH HOH . 
X 6 HOH A 42 442 424 HOH HOH . 
X 6 HOH A 43 443 431 HOH HOH . 
X 6 HOH A 44 444 438 HOH HOH . 
X 6 HOH A 45 445 446 HOH HOH . 
X 6 HOH A 46 446 439 HOH HOH . 
X 6 HOH A 47 447 444 HOH HOH . 
X 6 HOH A 48 448 443 HOH HOH . 
Y 6 HOH B 1 201 202 HOH HOH . 
Y 6 HOH B 2 202 201 HOH HOH . 
Y 6 HOH B 3 203 203 HOH HOH . 
Z 6 HOH C 1 401 440 HOH HOH . 
Z 6 HOH C 2 402 408 HOH HOH . 
Z 6 HOH C 3 403 427 HOH HOH . 
Z 6 HOH C 4 404 416 HOH HOH . 
Z 6 HOH C 5 405 405 HOH HOH . 
Z 6 HOH C 6 406 437 HOH HOH . 
Z 6 HOH C 7 407 411 HOH HOH . 
Z 6 HOH C 8 408 426 HOH HOH . 
Z 6 HOH C 9 409 407 HOH HOH . 
Z 6 HOH C 10 410 406 HOH HOH . 
Z 6 HOH C 11 411 409 HOH HOH . 
Z 6 HOH C 12 412 424 HOH HOH . 
Z 6 HOH C 13 413 414 HOH HOH . 
Z 6 HOH C 14 414 417 HOH HOH . 
Z 6 HOH C 15 415 419 HOH HOH . 
Z 6 HOH C 16 416 413 HOH HOH . 
Z 6 HOH C 17 417 415 HOH HOH . 
Z 6 HOH C 18 418 401 HOH HOH . 
Z 6 HOH C 19 419 435 HOH HOH . 
Z 6 HOH C 20 420 439 HOH HOH . 
Z 6 HOH C 21 421 403 HOH HOH . 
Z 6 HOH C 22 422 430 HOH HOH . 
Z 6 HOH C 23 423 420 HOH HOH . 
Z 6 HOH C 24 424 425 HOH HOH . 
Z 6 HOH C 25 425 418 HOH HOH . 
Z 6 HOH C 26 426 402 HOH HOH . 
Z 6 HOH C 27 427 441 HOH HOH . 
Z 6 HOH C 28 428 412 HOH HOH . 
Z 6 HOH C 29 429 432 HOH HOH . 
Z 6 HOH C 30 430 433 HOH HOH . 
Z 6 HOH C 31 431 404 HOH HOH . 
Z 6 HOH C 32 432 429 HOH HOH . 
Z 6 HOH C 33 433 410 HOH HOH . 
Z 6 HOH C 34 434 434 HOH HOH . 
Z 6 HOH C 35 435 438 HOH HOH . 
Z 6 HOH C 36 436 422 HOH HOH . 
Z 6 HOH C 37 437 431 HOH HOH . 
Z 6 HOH C 38 438 421 HOH HOH . 
Z 6 HOH C 39 439 428 HOH HOH . 
Z 6 HOH C 40 440 436 HOH HOH . 
AA 6 HOH D 1 301 302 HOH HOH . 
AA 6 HOH D 2 302 301 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 LFA . . . H 3 43.804 -5.516 3.625 1 49.93 ? C1 LFA 304 A 1 
HETATM 2 C C2 LFA . . . H 3 45.284 -5.371 3.512 1 48 ? C2 LFA 304 A 1 
HETATM 3 C C3 LFA . . . H 3 45.651 -3.942 3.281 1 43.54 ? C3 LFA 304 A 1 
HETATM 4 C C4 LFA . . . H 3 45.089 -3.092 4.369 1 44.17 ? C4 LFA 304 A 1 
HETATM 5 C C5 LFA . . . H 3 45.789 -1.773 4.413 1 39.76 ? C5 LFA 304 A 1 
HETATM 6 C C6 LFA . . . H 3 44.998 -0.824 5.25 1 42.85 ? C6 LFA 304 A 1 
HETATM 7 C C7 LFA . . . H 3 45.886 -0.068 6.181 1 47.67 ? C7 LFA 304 A 1 
HETATM 8 C C8 LFA . . . H 3 45.237 1.236 6.51 1 48.93 ? C8 LFA 304 A 1 
HETATM 9 C C9 LFA . . . H 3 46.172 2.094 7.292 1 44.15 ? C9 LFA 304 A 1 
HETATM 10 C C10 LFA . . . H 3 46.013 3.517 6.87 1 45.37 ? C10 LFA 304 A 1 
#
_model_server_stats.io_time_ms              348 
_model_server_stats.parse_time_ms           421 
_model_server_stats.create_model_time_ms    41 
_model_server_stats.query_time_ms           830 
_model_server_stats.encode_time_ms          8 
_model_server_stats.element_count           10 
#