data_5JJN
#
_model_server_result.job_id            PQ38UzcIDD-DKuCTENhB5g 
_model_server_result.datetime_utc      '2025-02-16 11:30:04' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5jjn 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"T","auth_seq_id":305}' 
#
_entry.id    5JJN 
#
_exptl.entry_id    5JJN 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              292.369 
_entity.id                          4 
_entity.src_method                  man 
_entity.type                        non-polymer 
_entity.pdbx_description            'octyl beta-D-glucopyranoside' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5JJN 
_cell.length_a            47.131 
_cell.length_b            109.096 
_cell.length_c            121.818 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5JJN 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 M N N 
? 4 T N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A NZ LYS 204 A LYS 205 1_555 N C15 RET . A RET 310 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.47 ? 
covale ? covale2 C NZ LYS 204 C LYS 205 1_555 V C15 RET . C RET 307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.471 ? 
#
_chem_comp.formula           'C14 H28 O6' 
_chem_comp.formula_weight    292.369 
_chem_comp.id                BOG 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              'octyl beta-D-glucopyranoside' 
_chem_comp.type              d-saccharide 
_chem_comp.pdbx_synonyms     'Beta-Octylglucoside;octyl beta-D-glucoside;octyl D-glucoside;octyl glucoside' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 BOG sing 70 n n 
C1 C2 BOG sing 71 n n 
C1 O5 BOG sing 72 n n 
C1 H1 BOG sing 73 n n 
O1 C1' BOG sing 74 n n 
C2 O2 BOG sing 75 n n 
C2 C3 BOG sing 76 n n 
C2 H2 BOG sing 77 n n 
O2 HO2 BOG sing 78 n n 
C3 O3 BOG sing 79 n n 
C3 C4 BOG sing 80 n n 
C3 H3 BOG sing 81 n n 
O3 HO3 BOG sing 82 n n 
C4 O4 BOG sing 83 n n 
C4 C5 BOG sing 84 n n 
C4 H4 BOG sing 85 n n 
O4 HO4 BOG sing 86 n n 
C5 O5 BOG sing 87 n n 
C5 C6 BOG sing 88 n n 
C5 H5 BOG sing 89 n n 
C6 O6 BOG sing 90 n n 
C6 H61 BOG sing 91 n n 
C6 H62 BOG sing 92 n n 
O6 HO6 BOG sing 93 n n 
C1' C2' BOG sing 94 n n 
C1' "H1'1" BOG sing 95 n n 
C1' "H1'2" BOG sing 96 n n 
C2' C3' BOG sing 97 n n 
C2' "H2'1" BOG sing 98 n n 
C2' "H2'2" BOG sing 99 n n 
C3' C4' BOG sing 100 n n 
C3' "H3'1" BOG sing 101 n n 
C3' "H3'2" BOG sing 102 n n 
C4' C5' BOG sing 103 n n 
C4' "H4'1" BOG sing 104 n n 
C4' "H4'2" BOG sing 105 n n 
C5' C6' BOG sing 106 n n 
C5' "H5'1" BOG sing 107 n n 
C5' "H5'2" BOG sing 108 n n 
C6' C7' BOG sing 109 n n 
C6' "H6'1" BOG sing 110 n n 
C6' "H6'2" BOG sing 111 n n 
C7' C8' BOG sing 112 n n 
C7' "H7'1" BOG sing 113 n n 
C7' "H7'2" BOG sing 114 n n 
C8' "H8'1" BOG sing 115 n n 
C8' "H8'2" BOG sing 116 n n 
C8' "H8'3" BOG sing 117 n n 
#
_pdbx_chem_comp_identifier.comp_id            BOG 
_pdbx_chem_comp_identifier.identifier         b-octylglucoside 
_pdbx_chem_comp_identifier.type               'IUPAC CARBOHYDRATE SYMBOL' 
_pdbx_chem_comp_identifier.program            PDB-CARE 
_pdbx_chem_comp_identifier.program_version    1 
#
_atom_sites.entry_id                     5JJN 
_atom_sites.fract_transf_matrix[1][1]    0.021217 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009166 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008209 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 3 LFA A 1 301 302 LFA LFA . 
F 3 LFA A 1 302 303 LFA LFA . 
G 3 LFA A 1 303 304 LFA LFA . 
H 3 LFA A 1 304 305 LFA LFA . 
I 3 LFA A 1 305 306 LFA LFA . 
J 3 LFA A 1 306 307 LFA LFA . 
K 3 LFA A 1 307 308 LFA LFA . 
L 3 LFA A 1 308 309 LFA LFA . 
M 4 BOG A 1 309 310 BOG BOG . 
N 5 RET A 1 310 311 RET RET . 
O 3 LFA A 1 311 303 LFA LFA . 
P 3 LFA C 1 301 301 LFA LFA . 
Q 3 LFA C 1 302 301 LFA LFA . 
R 3 LFA C 1 303 302 LFA LFA . 
S 3 LFA C 1 304 304 LFA LFA . 
T 4 BOG C 1 305 305 BOG BOG . 
U 3 LFA C 1 306 306 LFA LFA . 
V 5 RET C 1 307 307 RET RET . 
W 3 LFA D 1 201 201 LFA LFA . 
X 6 HOH A 1 401 415 HOH HOH . 
X 6 HOH A 2 402 447 HOH HOH . 
X 6 HOH A 3 403 409 HOH HOH . 
X 6 HOH A 4 404 430 HOH HOH . 
X 6 HOH A 5 405 418 HOH HOH . 
X 6 HOH A 6 406 403 HOH HOH . 
X 6 HOH A 7 407 417 HOH HOH . 
X 6 HOH A 8 408 408 HOH HOH . 
X 6 HOH A 9 409 440 HOH HOH . 
X 6 HOH A 10 410 405 HOH HOH . 
X 6 HOH A 11 411 414 HOH HOH . 
X 6 HOH A 12 412 404 HOH HOH . 
X 6 HOH A 13 413 421 HOH HOH . 
X 6 HOH A 14 414 401 HOH HOH . 
X 6 HOH A 15 415 445 HOH HOH . 
X 6 HOH A 16 416 437 HOH HOH . 
X 6 HOH A 17 417 406 HOH HOH . 
X 6 HOH A 18 418 419 HOH HOH . 
X 6 HOH A 19 419 416 HOH HOH . 
X 6 HOH A 20 420 410 HOH HOH . 
X 6 HOH A 21 421 413 HOH HOH . 
X 6 HOH A 22 422 428 HOH HOH . 
X 6 HOH A 23 423 411 HOH HOH . 
X 6 HOH A 24 424 412 HOH HOH . 
X 6 HOH A 25 425 434 HOH HOH . 
X 6 HOH A 26 426 429 HOH HOH . 
X 6 HOH A 27 427 425 HOH HOH . 
X 6 HOH A 28 428 441 HOH HOH . 
X 6 HOH A 29 429 423 HOH HOH . 
X 6 HOH A 30 430 427 HOH HOH . 
X 6 HOH A 31 431 435 HOH HOH . 
X 6 HOH A 32 432 402 HOH HOH . 
X 6 HOH A 33 433 436 HOH HOH . 
X 6 HOH A 34 434 407 HOH HOH . 
X 6 HOH A 35 435 422 HOH HOH . 
X 6 HOH A 36 436 420 HOH HOH . 
X 6 HOH A 37 437 442 HOH HOH . 
X 6 HOH A 38 438 426 HOH HOH . 
X 6 HOH A 39 439 432 HOH HOH . 
X 6 HOH A 40 440 433 HOH HOH . 
X 6 HOH A 41 441 423 HOH HOH . 
X 6 HOH A 42 442 424 HOH HOH . 
X 6 HOH A 43 443 431 HOH HOH . 
X 6 HOH A 44 444 438 HOH HOH . 
X 6 HOH A 45 445 446 HOH HOH . 
X 6 HOH A 46 446 439 HOH HOH . 
X 6 HOH A 47 447 444 HOH HOH . 
X 6 HOH A 48 448 443 HOH HOH . 
Y 6 HOH B 1 201 202 HOH HOH . 
Y 6 HOH B 2 202 201 HOH HOH . 
Y 6 HOH B 3 203 203 HOH HOH . 
Z 6 HOH C 1 401 440 HOH HOH . 
Z 6 HOH C 2 402 408 HOH HOH . 
Z 6 HOH C 3 403 427 HOH HOH . 
Z 6 HOH C 4 404 416 HOH HOH . 
Z 6 HOH C 5 405 405 HOH HOH . 
Z 6 HOH C 6 406 437 HOH HOH . 
Z 6 HOH C 7 407 411 HOH HOH . 
Z 6 HOH C 8 408 426 HOH HOH . 
Z 6 HOH C 9 409 407 HOH HOH . 
Z 6 HOH C 10 410 406 HOH HOH . 
Z 6 HOH C 11 411 409 HOH HOH . 
Z 6 HOH C 12 412 424 HOH HOH . 
Z 6 HOH C 13 413 414 HOH HOH . 
Z 6 HOH C 14 414 417 HOH HOH . 
Z 6 HOH C 15 415 419 HOH HOH . 
Z 6 HOH C 16 416 413 HOH HOH . 
Z 6 HOH C 17 417 415 HOH HOH . 
Z 6 HOH C 18 418 401 HOH HOH . 
Z 6 HOH C 19 419 435 HOH HOH . 
Z 6 HOH C 20 420 439 HOH HOH . 
Z 6 HOH C 21 421 403 HOH HOH . 
Z 6 HOH C 22 422 430 HOH HOH . 
Z 6 HOH C 23 423 420 HOH HOH . 
Z 6 HOH C 24 424 425 HOH HOH . 
Z 6 HOH C 25 425 418 HOH HOH . 
Z 6 HOH C 26 426 402 HOH HOH . 
Z 6 HOH C 27 427 441 HOH HOH . 
Z 6 HOH C 28 428 412 HOH HOH . 
Z 6 HOH C 29 429 432 HOH HOH . 
Z 6 HOH C 30 430 433 HOH HOH . 
Z 6 HOH C 31 431 404 HOH HOH . 
Z 6 HOH C 32 432 429 HOH HOH . 
Z 6 HOH C 33 433 410 HOH HOH . 
Z 6 HOH C 34 434 434 HOH HOH . 
Z 6 HOH C 35 435 438 HOH HOH . 
Z 6 HOH C 36 436 422 HOH HOH . 
Z 6 HOH C 37 437 431 HOH HOH . 
Z 6 HOH C 38 438 421 HOH HOH . 
Z 6 HOH C 39 439 428 HOH HOH . 
Z 6 HOH C 40 440 436 HOH HOH . 
AA 6 HOH D 1 301 302 HOH HOH . 
AA 6 HOH D 2 302 301 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 BOG . . . T 4 84.563 27.696 50.489 1 90.59 ? C1 BOG 305 C 1 
HETATM 2 O O1 BOG . . . T 4 83.926 26.993 49.47 1 85.17 ? O1 BOG 305 C 1 
HETATM 3 C C2 BOG . . . T 4 84.138 29.14 50.488 1 93.21 ? C2 BOG 305 C 1 
HETATM 4 O O2 BOG . . . T 4 85.045 29.89 49.786 1 93.7 ? O2 BOG 305 C 1 
HETATM 5 C C3 BOG . . . T 4 83.967 29.736 51.894 1 95.91 ? C3 BOG 305 C 1 
HETATM 6 O O3 BOG . . . T 4 82.618 29.828 52.215 1 98.08 ? O3 BOG 305 C 1 
HETATM 7 C C4 BOG . . . T 4 84.708 29.019 52.995 1 96.56 ? C4 BOG 305 C 1 
HETATM 8 O O4 BOG . . . T 4 85.844 29.738 53.383 1 98.48 ? O4 BOG 305 C 1 
HETATM 9 C C5 BOG . . . T 4 85.124 27.633 52.629 1 97.12 ? C5 BOG 305 C 1 
HETATM 10 O O5 BOG . . . T 4 84.272 27.088 51.681 1 96.38 ? O5 BOG 305 C 1 
HETATM 11 C C6 BOG . . . T 4 85.147 26.79 53.868 1 97.81 ? C6 BOG 305 C 1 
HETATM 12 O O6 BOG . . . T 4 84.355 27.37 54.847 1 98.93 ? O6 BOG 305 C 1 
HETATM 13 C C1' BOG . . . T 4 84.689 26.215 48.607 1 79.49 ? C1' BOG 305 C 1 
HETATM 14 C C2' BOG . . . T 4 84.652 24.756 49.056 1 69.73 ? C2' BOG 305 C 1 
HETATM 15 C C3' BOG . . . T 4 84.612 23.859 47.827 1 61.83 ? C3' BOG 305 C 1 
HETATM 16 C C4' BOG . . . T 4 85.741 22.823 47.896 1 55.75 ? C4' BOG 305 C 1 
HETATM 17 C C5' BOG . . . T 4 85.503 21.738 46.816 1 45.23 ? C5' BOG 305 C 1 
HETATM 18 C C6' BOG . . . T 4 86.841 21.269 46.258 1 41.27 ? C6' BOG 305 C 1 
HETATM 19 C C7' BOG . . . T 4 86.887 19.739 46.278 1 41.48 ? C7' BOG 305 C 1 
HETATM 20 C C8' BOG . . . T 4 87.802 19.241 45.17 1 42.26 ? C8' BOG 305 C 1 
#
_model_server_stats.io_time_ms              15 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           267 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           20 
#