data_5JJN # _model_server_result.job_id vY_2vrslR4uoLPgRZLKu3Q _model_server_result.datetime_utc '2024-11-14 23:24:01' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5jjn # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":306}' # _entry.id 5JJN # _exptl.entry_id 5JJN _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 282.547 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description EICOSANE _entity.pdbx_number_of_molecules 15 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5JJN _cell.length_a 47.131 _cell.length_b 109.096 _cell.length_c 121.818 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5JJN _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 F N N ? 3 G N N ? 3 H N N ? 3 I N N ? 3 J N N ? 3 K N N ? 3 L N N ? 3 O N N ? 3 P N N ? 3 Q N N ? 3 R N N ? 3 S N N ? 3 U N N ? 3 W N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A NZ LYS 204 A LYS 205 1_555 N C15 RET . A RET 310 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.47 ? covale ? covale2 C NZ LYS 204 C LYS 205 1_555 V C15 RET . C RET 307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.471 ? # _chem_comp.formula 'C20 H42' _chem_comp.formula_weight 282.547 _chem_comp.id LFA _chem_comp.mon_nstd_flag . _chem_comp.name EICOSANE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'LIPID FRAGMENT' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 LFA sing 229 n n C1 H11 LFA sing 230 n n C1 H12 LFA sing 231 n n C1 H13 LFA sing 232 n n C2 C3 LFA sing 233 n n C2 H21 LFA sing 234 n n C2 H22 LFA sing 235 n n C3 C4 LFA sing 236 n n C3 H31 LFA sing 237 n n C3 H32 LFA sing 238 n n C4 C5 LFA sing 239 n n C4 H41 LFA sing 240 n n C4 H42 LFA sing 241 n n C5 C6 LFA sing 242 n n C5 H51 LFA sing 243 n n C5 H52 LFA sing 244 n n C6 C7 LFA sing 245 n n C6 H61 LFA sing 246 n n C6 H62 LFA sing 247 n n C7 C8 LFA sing 248 n n C7 H71 LFA sing 249 n n C7 H72 LFA sing 250 n n C8 C9 LFA sing 251 n n C8 H81 LFA sing 252 n n C8 H82 LFA sing 253 n n C9 C10 LFA sing 254 n n C9 H91 LFA sing 255 n n C9 H92 LFA sing 256 n n C10 C11 LFA sing 257 n n C10 H101 LFA sing 258 n n C10 H102 LFA sing 259 n n C11 C12 LFA sing 260 n n C11 H111 LFA sing 261 n n C11 H112 LFA sing 262 n n C12 C13 LFA sing 263 n n C12 H121 LFA sing 264 n n C12 H122 LFA sing 265 n n C13 C14 LFA sing 266 n n C13 H131 LFA sing 267 n n C13 H132 LFA sing 268 n n C14 C15 LFA sing 269 n n C14 H141 LFA sing 270 n n C14 H142 LFA sing 271 n n C15 C16 LFA sing 272 n n C15 H151 LFA sing 273 n n C15 H152 LFA sing 274 n n C16 C17 LFA sing 275 n n C16 H161 LFA sing 276 n n C16 H162 LFA sing 277 n n C17 C18 LFA sing 278 n n C17 H171 LFA sing 279 n n C17 H172 LFA sing 280 n n C18 C19 LFA sing 281 n n C18 H181 LFA sing 282 n n C18 H182 LFA sing 283 n n C19 C20 LFA sing 284 n n C19 H191 LFA sing 285 n n C19 H192 LFA sing 286 n n C20 H201 LFA sing 287 n n C20 H202 LFA sing 288 n n C20 H203 LFA sing 289 n n # _atom_sites.entry_id 5JJN _atom_sites.fract_transf_matrix[1][1] 0.021217 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009166 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008209 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 LFA A 1 301 302 LFA LFA . F 3 LFA A 1 302 303 LFA LFA . G 3 LFA A 1 303 304 LFA LFA . H 3 LFA A 1 304 305 LFA LFA . I 3 LFA A 1 305 306 LFA LFA . J 3 LFA A 1 306 307 LFA LFA . K 3 LFA A 1 307 308 LFA LFA . L 3 LFA A 1 308 309 LFA LFA . M 4 BOG A 1 309 310 BOG BOG . N 5 RET A 1 310 311 RET RET . O 3 LFA A 1 311 303 LFA LFA . P 3 LFA C 1 301 301 LFA LFA . Q 3 LFA C 1 302 301 LFA LFA . R 3 LFA C 1 303 302 LFA LFA . S 3 LFA C 1 304 304 LFA LFA . T 4 BOG C 1 305 305 BOG BOG . U 3 LFA C 1 306 306 LFA LFA . V 5 RET C 1 307 307 RET RET . W 3 LFA D 1 201 201 LFA LFA . X 6 HOH A 1 401 415 HOH HOH . X 6 HOH A 2 402 447 HOH HOH . X 6 HOH A 3 403 409 HOH HOH . X 6 HOH A 4 404 430 HOH HOH . X 6 HOH A 5 405 418 HOH HOH . X 6 HOH A 6 406 403 HOH HOH . X 6 HOH A 7 407 417 HOH HOH . X 6 HOH A 8 408 408 HOH HOH . X 6 HOH A 9 409 440 HOH HOH . X 6 HOH A 10 410 405 HOH HOH . X 6 HOH A 11 411 414 HOH HOH . X 6 HOH A 12 412 404 HOH HOH . X 6 HOH A 13 413 421 HOH HOH . X 6 HOH A 14 414 401 HOH HOH . X 6 HOH A 15 415 445 HOH HOH . X 6 HOH A 16 416 437 HOH HOH . X 6 HOH A 17 417 406 HOH HOH . X 6 HOH A 18 418 419 HOH HOH . X 6 HOH A 19 419 416 HOH HOH . X 6 HOH A 20 420 410 HOH HOH . X 6 HOH A 21 421 413 HOH HOH . X 6 HOH A 22 422 428 HOH HOH . X 6 HOH A 23 423 411 HOH HOH . X 6 HOH A 24 424 412 HOH HOH . X 6 HOH A 25 425 434 HOH HOH . X 6 HOH A 26 426 429 HOH HOH . X 6 HOH A 27 427 425 HOH HOH . X 6 HOH A 28 428 441 HOH HOH . X 6 HOH A 29 429 423 HOH HOH . X 6 HOH A 30 430 427 HOH HOH . X 6 HOH A 31 431 435 HOH HOH . X 6 HOH A 32 432 402 HOH HOH . X 6 HOH A 33 433 436 HOH HOH . X 6 HOH A 34 434 407 HOH HOH . X 6 HOH A 35 435 422 HOH HOH . X 6 HOH A 36 436 420 HOH HOH . X 6 HOH A 37 437 442 HOH HOH . X 6 HOH A 38 438 426 HOH HOH . X 6 HOH A 39 439 432 HOH HOH . X 6 HOH A 40 440 433 HOH HOH . X 6 HOH A 41 441 423 HOH HOH . X 6 HOH A 42 442 424 HOH HOH . X 6 HOH A 43 443 431 HOH HOH . X 6 HOH A 44 444 438 HOH HOH . X 6 HOH A 45 445 446 HOH HOH . X 6 HOH A 46 446 439 HOH HOH . X 6 HOH A 47 447 444 HOH HOH . X 6 HOH A 48 448 443 HOH HOH . Y 6 HOH B 1 201 202 HOH HOH . Y 6 HOH B 2 202 201 HOH HOH . Y 6 HOH B 3 203 203 HOH HOH . Z 6 HOH C 1 401 440 HOH HOH . Z 6 HOH C 2 402 408 HOH HOH . Z 6 HOH C 3 403 427 HOH HOH . Z 6 HOH C 4 404 416 HOH HOH . Z 6 HOH C 5 405 405 HOH HOH . Z 6 HOH C 6 406 437 HOH HOH . Z 6 HOH C 7 407 411 HOH HOH . Z 6 HOH C 8 408 426 HOH HOH . Z 6 HOH C 9 409 407 HOH HOH . Z 6 HOH C 10 410 406 HOH HOH . Z 6 HOH C 11 411 409 HOH HOH . Z 6 HOH C 12 412 424 HOH HOH . Z 6 HOH C 13 413 414 HOH HOH . Z 6 HOH C 14 414 417 HOH HOH . Z 6 HOH C 15 415 419 HOH HOH . Z 6 HOH C 16 416 413 HOH HOH . Z 6 HOH C 17 417 415 HOH HOH . Z 6 HOH C 18 418 401 HOH HOH . Z 6 HOH C 19 419 435 HOH HOH . Z 6 HOH C 20 420 439 HOH HOH . Z 6 HOH C 21 421 403 HOH HOH . Z 6 HOH C 22 422 430 HOH HOH . Z 6 HOH C 23 423 420 HOH HOH . Z 6 HOH C 24 424 425 HOH HOH . Z 6 HOH C 25 425 418 HOH HOH . Z 6 HOH C 26 426 402 HOH HOH . Z 6 HOH C 27 427 441 HOH HOH . Z 6 HOH C 28 428 412 HOH HOH . Z 6 HOH C 29 429 432 HOH HOH . Z 6 HOH C 30 430 433 HOH HOH . Z 6 HOH C 31 431 404 HOH HOH . Z 6 HOH C 32 432 429 HOH HOH . Z 6 HOH C 33 433 410 HOH HOH . Z 6 HOH C 34 434 434 HOH HOH . Z 6 HOH C 35 435 438 HOH HOH . Z 6 HOH C 36 436 422 HOH HOH . Z 6 HOH C 37 437 431 HOH HOH . Z 6 HOH C 38 438 421 HOH HOH . Z 6 HOH C 39 439 428 HOH HOH . Z 6 HOH C 40 440 436 HOH HOH . AA 6 HOH D 1 301 302 HOH HOH . AA 6 HOH D 2 302 301 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 LFA . . . J 3 79.905 22.449 6.953 1 71.84 ? C1 LFA 306 A 1 HETATM 2 C C2 LFA . . . J 3 80.032 21.248 7.827 1 70.49 ? C2 LFA 306 A 1 HETATM 3 C C3 LFA . . . J 3 80.352 20.057 6.989 1 70.42 ? C3 LFA 306 A 1 HETATM 4 C C4 LFA . . . J 3 80.308 18.828 7.832 1 68.12 ? C4 LFA 306 A 1 HETATM 5 C C5 LFA . . . J 3 80.468 17.626 6.964 1 66.86 ? C5 LFA 306 A 1 HETATM 6 C C6 LFA . . . J 3 80.268 16.396 7.783 1 62.76 ? C6 LFA 306 A 1 HETATM 7 C C7 LFA . . . J 3 80.335 15.194 6.906 1 55.09 ? C7 LFA 306 A 1 HETATM 8 C C8 LFA . . . J 3 79.819 14.011 7.653 1 49.54 ? C8 LFA 306 A 1 HETATM 9 C C9 LFA . . . J 3 79.907 12.805 6.782 1 54.41 ? C9 LFA 306 A 1 HETATM 10 C C10 LFA . . . J 3 79.404 11.617 7.529 1 58.91 ? C10 LFA 306 A 1 # _model_server_stats.io_time_ms 22 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 21 _model_server_stats.query_time_ms 288 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 10 #