data_5JJN
#
_model_server_result.job_id            yBQwcaE3W2w790SzsOGHuQ 
_model_server_result.datetime_utc      '2024-11-24 07:41:18' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5jjn 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"N","auth_seq_id":310}' 
#
_entry.id    5JJN 
#
_exptl.entry_id    5JJN 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              284.436 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            RETINAL 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5JJN 
_cell.length_a            47.131 
_cell.length_b            109.096 
_cell.length_c            121.818 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5JJN 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 N N N 
? 5 V N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A NZ LYS 204 A LYS 205 1_555 N C15 RET . A RET 310 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.47 ? 
covale ? covale2 C NZ LYS 204 C LYS 205 1_555 V C15 RET . C RET 307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.471 ? 
#
_chem_comp.formula           'C20 H28 O' 
_chem_comp.formula_weight    284.436 
_chem_comp.id                RET 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              RETINAL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 RET sing 373 n n 
C1 C6 RET sing 374 n n 
C1 C16 RET sing 375 n n 
C1 C17 RET sing 376 n n 
C2 C3 RET sing 377 n n 
C2 H21 RET sing 378 n n 
C2 H22 RET sing 379 n n 
C3 C4 RET sing 380 n n 
C3 H31 RET sing 381 n n 
C3 H32 RET sing 382 n n 
C4 C5 RET sing 383 n n 
C4 H41 RET sing 384 n n 
C4 H42 RET sing 385 n n 
C5 C6 RET doub 386 n n 
C5 C18 RET sing 387 n n 
C6 C7 RET sing 388 n n 
C7 C8 RET doub 389 e n 
C7 H7 RET sing 390 n n 
C8 C9 RET sing 391 n n 
C8 H8 RET sing 392 n n 
C9 C10 RET doub 393 e n 
C9 C19 RET sing 394 n n 
C10 C11 RET sing 395 n n 
C10 H10 RET sing 396 n n 
C11 C12 RET doub 397 e n 
C11 H11 RET sing 398 n n 
C12 C13 RET sing 399 n n 
C12 H12 RET sing 400 n n 
C13 C14 RET doub 401 e n 
C13 C20 RET sing 402 n n 
C14 C15 RET sing 403 n n 
C14 H14 RET sing 404 n n 
C15 O1 RET doub 405 n n 
C15 H15 RET sing 406 n n 
C16 H161 RET sing 407 n n 
C16 H162 RET sing 408 n n 
C16 H163 RET sing 409 n n 
C17 H171 RET sing 410 n n 
C17 H172 RET sing 411 n n 
C17 H173 RET sing 412 n n 
C18 H181 RET sing 413 n n 
C18 H182 RET sing 414 n n 
C18 H183 RET sing 415 n n 
C19 H191 RET sing 416 n n 
C19 H192 RET sing 417 n n 
C19 H193 RET sing 418 n n 
C20 H201 RET sing 419 n n 
C20 H202 RET sing 420 n n 
C20 H203 RET sing 421 n n 
#
_atom_sites.entry_id                     5JJN 
_atom_sites.fract_transf_matrix[1][1]    0.021217 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009166 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008209 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 3 LFA A 1 301 302 LFA LFA . 
F 3 LFA A 1 302 303 LFA LFA . 
G 3 LFA A 1 303 304 LFA LFA . 
H 3 LFA A 1 304 305 LFA LFA . 
I 3 LFA A 1 305 306 LFA LFA . 
J 3 LFA A 1 306 307 LFA LFA . 
K 3 LFA A 1 307 308 LFA LFA . 
L 3 LFA A 1 308 309 LFA LFA . 
M 4 BOG A 1 309 310 BOG BOG . 
N 5 RET A 1 310 311 RET RET . 
O 3 LFA A 1 311 303 LFA LFA . 
P 3 LFA C 1 301 301 LFA LFA . 
Q 3 LFA C 1 302 301 LFA LFA . 
R 3 LFA C 1 303 302 LFA LFA . 
S 3 LFA C 1 304 304 LFA LFA . 
T 4 BOG C 1 305 305 BOG BOG . 
U 3 LFA C 1 306 306 LFA LFA . 
V 5 RET C 1 307 307 RET RET . 
W 3 LFA D 1 201 201 LFA LFA . 
X 6 HOH A 1 401 415 HOH HOH . 
X 6 HOH A 2 402 447 HOH HOH . 
X 6 HOH A 3 403 409 HOH HOH . 
X 6 HOH A 4 404 430 HOH HOH . 
X 6 HOH A 5 405 418 HOH HOH . 
X 6 HOH A 6 406 403 HOH HOH . 
X 6 HOH A 7 407 417 HOH HOH . 
X 6 HOH A 8 408 408 HOH HOH . 
X 6 HOH A 9 409 440 HOH HOH . 
X 6 HOH A 10 410 405 HOH HOH . 
X 6 HOH A 11 411 414 HOH HOH . 
X 6 HOH A 12 412 404 HOH HOH . 
X 6 HOH A 13 413 421 HOH HOH . 
X 6 HOH A 14 414 401 HOH HOH . 
X 6 HOH A 15 415 445 HOH HOH . 
X 6 HOH A 16 416 437 HOH HOH . 
X 6 HOH A 17 417 406 HOH HOH . 
X 6 HOH A 18 418 419 HOH HOH . 
X 6 HOH A 19 419 416 HOH HOH . 
X 6 HOH A 20 420 410 HOH HOH . 
X 6 HOH A 21 421 413 HOH HOH . 
X 6 HOH A 22 422 428 HOH HOH . 
X 6 HOH A 23 423 411 HOH HOH . 
X 6 HOH A 24 424 412 HOH HOH . 
X 6 HOH A 25 425 434 HOH HOH . 
X 6 HOH A 26 426 429 HOH HOH . 
X 6 HOH A 27 427 425 HOH HOH . 
X 6 HOH A 28 428 441 HOH HOH . 
X 6 HOH A 29 429 423 HOH HOH . 
X 6 HOH A 30 430 427 HOH HOH . 
X 6 HOH A 31 431 435 HOH HOH . 
X 6 HOH A 32 432 402 HOH HOH . 
X 6 HOH A 33 433 436 HOH HOH . 
X 6 HOH A 34 434 407 HOH HOH . 
X 6 HOH A 35 435 422 HOH HOH . 
X 6 HOH A 36 436 420 HOH HOH . 
X 6 HOH A 37 437 442 HOH HOH . 
X 6 HOH A 38 438 426 HOH HOH . 
X 6 HOH A 39 439 432 HOH HOH . 
X 6 HOH A 40 440 433 HOH HOH . 
X 6 HOH A 41 441 423 HOH HOH . 
X 6 HOH A 42 442 424 HOH HOH . 
X 6 HOH A 43 443 431 HOH HOH . 
X 6 HOH A 44 444 438 HOH HOH . 
X 6 HOH A 45 445 446 HOH HOH . 
X 6 HOH A 46 446 439 HOH HOH . 
X 6 HOH A 47 447 444 HOH HOH . 
X 6 HOH A 48 448 443 HOH HOH . 
Y 6 HOH B 1 201 202 HOH HOH . 
Y 6 HOH B 2 202 201 HOH HOH . 
Y 6 HOH B 3 203 203 HOH HOH . 
Z 6 HOH C 1 401 440 HOH HOH . 
Z 6 HOH C 2 402 408 HOH HOH . 
Z 6 HOH C 3 403 427 HOH HOH . 
Z 6 HOH C 4 404 416 HOH HOH . 
Z 6 HOH C 5 405 405 HOH HOH . 
Z 6 HOH C 6 406 437 HOH HOH . 
Z 6 HOH C 7 407 411 HOH HOH . 
Z 6 HOH C 8 408 426 HOH HOH . 
Z 6 HOH C 9 409 407 HOH HOH . 
Z 6 HOH C 10 410 406 HOH HOH . 
Z 6 HOH C 11 411 409 HOH HOH . 
Z 6 HOH C 12 412 424 HOH HOH . 
Z 6 HOH C 13 413 414 HOH HOH . 
Z 6 HOH C 14 414 417 HOH HOH . 
Z 6 HOH C 15 415 419 HOH HOH . 
Z 6 HOH C 16 416 413 HOH HOH . 
Z 6 HOH C 17 417 415 HOH HOH . 
Z 6 HOH C 18 418 401 HOH HOH . 
Z 6 HOH C 19 419 435 HOH HOH . 
Z 6 HOH C 20 420 439 HOH HOH . 
Z 6 HOH C 21 421 403 HOH HOH . 
Z 6 HOH C 22 422 430 HOH HOH . 
Z 6 HOH C 23 423 420 HOH HOH . 
Z 6 HOH C 24 424 425 HOH HOH . 
Z 6 HOH C 25 425 418 HOH HOH . 
Z 6 HOH C 26 426 402 HOH HOH . 
Z 6 HOH C 27 427 441 HOH HOH . 
Z 6 HOH C 28 428 412 HOH HOH . 
Z 6 HOH C 29 429 432 HOH HOH . 
Z 6 HOH C 30 430 433 HOH HOH . 
Z 6 HOH C 31 431 404 HOH HOH . 
Z 6 HOH C 32 432 429 HOH HOH . 
Z 6 HOH C 33 433 410 HOH HOH . 
Z 6 HOH C 34 434 434 HOH HOH . 
Z 6 HOH C 35 435 438 HOH HOH . 
Z 6 HOH C 36 436 422 HOH HOH . 
Z 6 HOH C 37 437 431 HOH HOH . 
Z 6 HOH C 38 438 421 HOH HOH . 
Z 6 HOH C 39 439 428 HOH HOH . 
Z 6 HOH C 40 440 436 HOH HOH . 
AA 6 HOH D 1 301 302 HOH HOH . 
AA 6 HOH D 2 302 301 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 RET . . . N 5 70.526 -0.672 5.354 1 30.95 ? C1 RET 310 A 1 
HETATM 2 C C2 RET . . . N 5 71.504 -1.899 5.241 1 26.03 ? C2 RET 310 A 1 
HETATM 3 C C3 RET . . . N 5 72.524 -1.408 4.262 1 23.46 ? C3 RET 310 A 1 
HETATM 4 C C4 RET . . . N 5 73.069 -0.192 5.115 1 29.15 ? C4 RET 310 A 1 
HETATM 5 C C5 RET . . . N 5 72.296 0.852 5.556 1 28.35 ? C5 RET 310 A 1 
HETATM 6 C C6 RET . . . N 5 70.962 0.604 5.765 1 17.7 ? C6 RET 310 A 1 
HETATM 7 C C7 RET . . . N 5 70.213 1.709 6.212 1 14.86 ? C7 RET 310 A 1 
HETATM 8 C C8 RET . . . N 5 68.731 1.553 6.464 1 13.34 ? C8 RET 310 A 1 
HETATM 9 C C9 RET . . . N 5 67.921 2.721 6.936 1 22.23 ? C9 RET 310 A 1 
HETATM 10 C C10 RET . . . N 5 66.46 2.424 7.142 1 16.15 ? C10 RET 310 A 1 
HETATM 11 C C11 RET . . . N 5 65.591 3.55 7.611 1 23.98 ? C11 RET 310 A 1 
HETATM 12 C C12 RET . . . N 5 64.181 3.044 7.75 1 19.99 ? C12 RET 310 A 1 
HETATM 13 C C13 RET . . . N 5 63.167 4.048 8.209 1 21.2 ? C13 RET 310 A 1 
HETATM 14 C C14 RET . . . N 5 61.739 3.559 8.357 1 26.27 ? C14 RET 310 A 1 
HETATM 15 C C15 RET . . . N 5 60.723 4.579 8.813 1 30.02 ? C15 RET 310 A 1 
HETATM 16 C C16 RET . . . N 5 69.629 -0.582 4.11 1 33.66 ? C16 RET 310 A 1 
HETATM 17 C C17 RET . . . N 5 69.699 -1.313 6.495 1 29.06 ? C17 RET 310 A 1 
HETATM 18 C C18 RET . . . N 5 72.845 2.115 5.782 1 23.46 ? C18 RET 310 A 1 
HETATM 19 C C19 RET . . . N 5 68.542 4.085 7.251 1 23.07 ? C19 RET 310 A 1 
HETATM 20 C C20 RET . . . N 5 63.601 5.459 8.603 1 19.37 ? C20 RET 310 A 1 
#
_model_server_stats.io_time_ms              15 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    13 
_model_server_stats.query_time_ms           302 
_model_server_stats.encode_time_ms          20 
_model_server_stats.element_count           20 
#