data_5JJU # _model_server_result.job_id 6wjNkyIbaNNhCxNhaFb7bw _model_server_result.datetime_utc '2024-11-05 00:24:35' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5jju # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":1001}' # _entry.id 5JJU # _exptl.entry_id 5JJU _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 54.938 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MANGANESE (II) ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5JJU _cell.length_a 58.374 _cell.length_b 99.267 _cell.length_c 108.677 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5JJU _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N ? 3 F N N ? 3 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 31 A HIS 41 1_555 E MN MN . A MN 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.357 ? metalc ? metalc2 A OD1 ASP 35 A ASP 45 1_555 E MN MN . A MN 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.305 ? metalc ? metalc3 A OD2 ASP 35 A ASP 45 1_555 E MN MN . A MN 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.628 ? metalc ? metalc4 A OD2 ASP 37 A ASP 47 1_555 D MN MN . A MN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.346 ? metalc ? metalc5 A OD2 ASP 96 A ASP 106 1_555 D MN MN . A MN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.543 ? metalc ? metalc6 A OD1 ASP 96 A ASP 106 1_555 E MN MN . A MN 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.143 ? metalc ? metalc7 A NE2 HIS 121 A HIS 131 1_555 D MN MN . A MN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.3 ? metalc ? metalc8 A OD2 ASP 171 A ASP 181 1_555 D MN MN . A MN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.223 ? metalc ? metalc9 D MN MN . A MN 1001 1_555 J O HOH . A HOH 1129 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.529 ? metalc ? metalc10 E MN MN . A MN 1002 1_555 J O HOH . A HOH 1129 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.264 ? metalc ? metalc11 E MN MN . A MN 1002 1_555 C OP1 A 2 C A 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.218 ? metalc ? metalc12 B NE2 HIS 31 B HIS 41 1_555 G MN MN . B MN 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.577 ? metalc ? metalc13 B OD1 ASP 35 B ASP 45 1_555 G MN MN . B MN 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.636 ? metalc ? metalc14 B OD2 ASP 35 B ASP 45 1_555 G MN MN . B MN 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.128 ? metalc ? metalc15 B OD2 ASP 37 B ASP 47 1_555 F MN MN . B MN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.293 ? metalc ? metalc16 B OD1 ASP 96 B ASP 106 1_555 F MN MN . B MN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.295 ? metalc ? metalc17 B OD2 ASP 96 B ASP 106 1_555 G MN MN . B MN 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? metalc ? metalc18 B NE2 HIS 121 B HIS 131 1_555 F MN MN . B MN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.26 ? metalc ? metalc19 B OD2 ASP 171 B ASP 181 1_555 F MN MN . B MN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.189 ? metalc ? metalc20 F MN MN . B MN 1001 1_555 I O1P AMP . B AMP 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.531 ? metalc ? metalc21 F MN MN . B MN 1001 1_555 I O2P AMP . B AMP 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.619 ? metalc ? metalc22 G MN MN . B MN 1002 1_555 I O2P AMP . B AMP 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.114 ? # _chem_comp.formula 'Mn 2' _chem_comp.formula_weight 54.938 _chem_comp.id MN _chem_comp.mon_nstd_flag . _chem_comp.name 'MANGANESE (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5JJU _atom_sites.fract_transf_matrix[1][1] 0.017131 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010074 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009202 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 3 MN A 1 1001 1001 MN MN . E 3 MN A 1 1002 1002 MN MN . F 3 MN B 1 1001 1001 MN MN . G 3 MN B 1 1002 1002 MN MN . H 4 AMP B 1 1003 1003 AMP AMP . I 4 AMP B 1 1004 1004 AMP AMP . J 5 HOH A 1 1101 20 HOH HOH . J 5 HOH A 2 1102 125 HOH HOH . J 5 HOH A 3 1103 116 HOH HOH . J 5 HOH A 4 1104 129 HOH HOH . J 5 HOH A 5 1105 155 HOH HOH . J 5 HOH A 6 1106 41 HOH HOH . J 5 HOH A 7 1107 93 HOH HOH . J 5 HOH A 8 1108 165 HOH HOH . J 5 HOH A 9 1109 133 HOH HOH . J 5 HOH A 10 1110 42 HOH HOH . J 5 HOH A 11 1111 88 HOH HOH . J 5 HOH A 12 1112 89 HOH HOH . J 5 HOH A 13 1113 118 HOH HOH . J 5 HOH A 14 1114 54 HOH HOH . J 5 HOH A 15 1115 162 HOH HOH . J 5 HOH A 16 1116 74 HOH HOH . J 5 HOH A 17 1117 95 HOH HOH . J 5 HOH A 18 1118 49 HOH HOH . J 5 HOH A 19 1119 23 HOH HOH . J 5 HOH A 20 1120 91 HOH HOH . J 5 HOH A 21 1121 24 HOH HOH . J 5 HOH A 22 1122 5 HOH HOH . J 5 HOH A 23 1123 3 HOH HOH . J 5 HOH A 24 1124 14 HOH HOH . J 5 HOH A 25 1125 102 HOH HOH . J 5 HOH A 26 1126 65 HOH HOH . J 5 HOH A 27 1127 11 HOH HOH . J 5 HOH A 28 1128 90 HOH HOH . J 5 HOH A 29 1129 1 HOH HOH . J 5 HOH A 30 1130 15 HOH HOH . J 5 HOH A 31 1131 34 HOH HOH . J 5 HOH A 32 1132 12 HOH HOH . J 5 HOH A 33 1133 6 HOH HOH . J 5 HOH A 34 1134 10 HOH HOH . J 5 HOH A 35 1135 83 HOH HOH . J 5 HOH A 36 1136 53 HOH HOH . J 5 HOH A 37 1137 147 HOH HOH . J 5 HOH A 38 1138 159 HOH HOH . J 5 HOH A 39 1139 82 HOH HOH . J 5 HOH A 40 1140 63 HOH HOH . J 5 HOH A 41 1141 30 HOH HOH . J 5 HOH A 42 1142 44 HOH HOH . J 5 HOH A 43 1143 60 HOH HOH . J 5 HOH A 44 1144 99 HOH HOH . J 5 HOH A 45 1145 149 HOH HOH . J 5 HOH A 46 1146 57 HOH HOH . J 5 HOH A 47 1147 71 HOH HOH . J 5 HOH A 48 1148 144 HOH HOH . J 5 HOH A 49 1149 108 HOH HOH . J 5 HOH A 50 1150 100 HOH HOH . J 5 HOH A 51 1151 151 HOH HOH . J 5 HOH A 52 1152 127 HOH HOH . J 5 HOH A 53 1153 31 HOH HOH . J 5 HOH A 54 1154 96 HOH HOH . J 5 HOH A 55 1155 113 HOH HOH . J 5 HOH A 56 1156 39 HOH HOH . J 5 HOH A 57 1157 28 HOH HOH . J 5 HOH A 58 1158 79 HOH HOH . J 5 HOH A 59 1159 68 HOH HOH . J 5 HOH A 60 1160 26 HOH HOH . J 5 HOH A 61 1161 103 HOH HOH . J 5 HOH A 62 1162 58 HOH HOH . J 5 HOH A 63 1163 107 HOH HOH . J 5 HOH A 64 1164 153 HOH HOH . J 5 HOH A 65 1165 112 HOH HOH . J 5 HOH A 66 1166 32 HOH HOH . J 5 HOH A 67 1167 37 HOH HOH . J 5 HOH A 68 1168 77 HOH HOH . J 5 HOH A 69 1169 98 HOH HOH . J 5 HOH A 70 1170 25 HOH HOH . J 5 HOH A 71 1171 138 HOH HOH . J 5 HOH A 72 1172 136 HOH HOH . J 5 HOH A 73 1173 157 HOH HOH . J 5 HOH A 74 1174 78 HOH HOH . J 5 HOH A 75 1175 132 HOH HOH . J 5 HOH A 76 1176 62 HOH HOH . J 5 HOH A 77 1177 156 HOH HOH . J 5 HOH A 78 1178 154 HOH HOH . J 5 HOH A 79 1179 143 HOH HOH . J 5 HOH A 80 1180 59 HOH HOH . J 5 HOH A 81 1181 87 HOH HOH . J 5 HOH A 82 1182 163 HOH HOH . J 5 HOH A 83 1183 122 HOH HOH . K 5 HOH B 1 1101 81 HOH HOH . K 5 HOH B 2 1102 48 HOH HOH . K 5 HOH B 3 1103 92 HOH HOH . K 5 HOH B 4 1104 150 HOH HOH . K 5 HOH B 5 1105 18 HOH HOH . K 5 HOH B 6 1106 128 HOH HOH . K 5 HOH B 7 1107 9 HOH HOH . K 5 HOH B 8 1108 27 HOH HOH . K 5 HOH B 9 1109 115 HOH HOH . K 5 HOH B 10 1110 130 HOH HOH . K 5 HOH B 11 1111 148 HOH HOH . K 5 HOH B 12 1112 124 HOH HOH . K 5 HOH B 13 1113 94 HOH HOH . K 5 HOH B 14 1114 21 HOH HOH . K 5 HOH B 15 1115 105 HOH HOH . K 5 HOH B 16 1116 123 HOH HOH . K 5 HOH B 17 1117 86 HOH HOH . K 5 HOH B 18 1118 69 HOH HOH . K 5 HOH B 19 1119 110 HOH HOH . K 5 HOH B 20 1120 38 HOH HOH . K 5 HOH B 21 1121 139 HOH HOH . K 5 HOH B 22 1122 55 HOH HOH . K 5 HOH B 23 1123 8 HOH HOH . K 5 HOH B 24 1124 43 HOH HOH . K 5 HOH B 25 1125 119 HOH HOH . K 5 HOH B 26 1126 13 HOH HOH . K 5 HOH B 27 1127 40 HOH HOH . K 5 HOH B 28 1128 160 HOH HOH . K 5 HOH B 29 1129 141 HOH HOH . K 5 HOH B 30 1130 104 HOH HOH . K 5 HOH B 31 1131 84 HOH HOH . K 5 HOH B 32 1132 4 HOH HOH . K 5 HOH B 33 1133 61 HOH HOH . K 5 HOH B 34 1134 135 HOH HOH . K 5 HOH B 35 1135 45 HOH HOH . K 5 HOH B 36 1136 164 HOH HOH . K 5 HOH B 37 1137 16 HOH HOH . K 5 HOH B 38 1138 109 HOH HOH . K 5 HOH B 39 1139 7 HOH HOH . K 5 HOH B 40 1140 2 HOH HOH . K 5 HOH B 41 1141 52 HOH HOH . K 5 HOH B 42 1142 56 HOH HOH . K 5 HOH B 43 1143 64 HOH HOH . K 5 HOH B 44 1144 117 HOH HOH . K 5 HOH B 45 1145 67 HOH HOH . K 5 HOH B 46 1146 22 HOH HOH . K 5 HOH B 47 1147 46 HOH HOH . K 5 HOH B 48 1148 97 HOH HOH . K 5 HOH B 49 1149 35 HOH HOH . K 5 HOH B 50 1150 29 HOH HOH . K 5 HOH B 51 1151 50 HOH HOH . K 5 HOH B 52 1152 17 HOH HOH . K 5 HOH B 53 1153 120 HOH HOH . K 5 HOH B 54 1154 36 HOH HOH . K 5 HOH B 55 1155 75 HOH HOH . K 5 HOH B 56 1156 85 HOH HOH . K 5 HOH B 57 1157 161 HOH HOH . K 5 HOH B 58 1158 121 HOH HOH . K 5 HOH B 59 1159 146 HOH HOH . K 5 HOH B 60 1160 137 HOH HOH . K 5 HOH B 61 1161 70 HOH HOH . K 5 HOH B 62 1162 19 HOH HOH . K 5 HOH B 63 1163 101 HOH HOH . K 5 HOH B 64 1164 152 HOH HOH . K 5 HOH B 65 1165 47 HOH HOH . K 5 HOH B 66 1166 134 HOH HOH . K 5 HOH B 67 1167 72 HOH HOH . K 5 HOH B 68 1168 51 HOH HOH . K 5 HOH B 69 1169 33 HOH HOH . K 5 HOH B 70 1170 126 HOH HOH . K 5 HOH B 71 1171 66 HOH HOH . K 5 HOH B 72 1172 166 HOH HOH . K 5 HOH B 73 1173 73 HOH HOH . K 5 HOH B 74 1174 80 HOH HOH . K 5 HOH B 75 1175 140 HOH HOH . K 5 HOH B 76 1176 76 HOH HOH . K 5 HOH B 77 1177 106 HOH HOH . K 5 HOH B 78 1178 142 HOH HOH . K 5 HOH B 79 1179 111 HOH HOH . K 5 HOH B 80 1180 145 HOH HOH . K 5 HOH B 81 1181 114 HOH HOH . K 5 HOH B 82 1182 158 HOH HOH . K 5 HOH B 83 1183 131 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MN _atom_site.label_atom_id MN _atom_site.label_comp_id MN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id F _atom_site.label_entity_id 3 _atom_site.Cartn_x 5.528 _atom_site.Cartn_y -11.644 _atom_site.Cartn_z -22.12 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 25.99 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MN _atom_site.auth_comp_id MN _atom_site.auth_seq_id 1001 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 298 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #