data_5JJW # _model_server_result.job_id UVqsf2bP_A533yugVm5c3g _model_server_result.datetime_utc '2024-12-21 13:24:29' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5jjw # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":601}' # _entry.id 5JJW # _exptl.entry_id 5JJW _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5JJW _cell.length_a 117.925 _cell.length_b 117.925 _cell.length_c 205.326 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5JJW _symmetry.cell_setting ? _symmetry.Int_Tables_number 181 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 64 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C GLU 42 A GLU 320 1_555 A N MSE 43 A MSE 321 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.319 ? covale ? covale2 A C MSE 43 A MSE 321 1_555 A N LYS 44 A LYS 322 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.364 ? covale ? covale3 A C ALA 110 A ALA 388 1_555 A N MSE 111 A MSE 389 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.348 ? covale ? covale4 A C MSE 111 A MSE 389 1_555 A N GLU 112 A GLU 390 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.318 ? covale ? covale5 A C ILE 196 A ILE 474 1_555 A N MSE 197 A MSE 475 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.354 ? covale ? covale6 A C MSE 197 A MSE 475 1_555 A N GLN 198 A GLN 476 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale7 A C ASN 210 A ASN 488 1_555 A N MSE 211 A MSE 489 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.318 ? covale ? covale8 A C MSE 211 A MSE 489 1_555 A N GLN 212 A GLN 490 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale9 A C ILE 221 A ILE 499 1_555 A N MSE 222 A MSE 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale10 A C MSE 222 A MSE 500 1_555 A N THR 223 A THR 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.342 ? covale ? covale11 A C ASN 231 A ASN 509 1_555 A N MSE 232 A MSE 510 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.344 ? covale ? covale12 A C MSE 232 A MSE 510 1_555 A N TRP 233 A TRP 511 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale13 A C THR 273 A THR 551 1_555 A N MSE 274 A MSE 552 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.344 ? covale ? covale14 A C MSE 274 A MSE 552 1_555 A N GLU 275 A GLU 553 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale15 B C GLN 55 B GLN 54 1_555 B N MSE 56 B MSE 55 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.35 ? covale ? covale16 B C MSE 56 B MSE 55 1_555 B N GLY 57 B GLY 56 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale17 B C LEU 107 B LEU 106 1_555 B N MSE 108 B MSE 107 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.357 ? covale ? covale18 B C MSE 108 B MSE 107 1_555 B N GLU 109 B GLU 108 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.355 ? covale ? covale19 B C GLY 122 B GLY 121 1_555 B N MSE 123 B MSE 122 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale20 B C MSE 123 B MSE 122 1_555 B N PHE 124 B PHE 123 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.347 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 5JJW _atom_sites.fract_transf_matrix[1][1] 0.00848 _atom_sites.fract_transf_matrix[1][2] 0.004896 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009792 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00487 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 EDO A 1 601 2 EDO EDO . D 4 UNX B 1 301 1 UNX UNX . E 5 HOH A 1 701 3 HOH HOH . E 5 HOH A 2 702 1 HOH HOH . E 5 HOH A 3 703 8 HOH HOH . E 5 HOH A 4 704 9 HOH HOH . E 5 HOH A 5 705 5 HOH HOH . E 5 HOH A 6 706 6 HOH HOH . E 5 HOH A 7 707 2 HOH HOH . E 5 HOH A 8 708 11 HOH HOH . E 5 HOH A 9 709 7 HOH HOH . E 5 HOH A 10 710 4 HOH HOH . F 5 HOH B 1 401 10 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . C 3 -5.456 57.843 34.064 1 62.02 ? C1 EDO 601 A 1 HETATM 2 O O1 EDO . . . C 3 -5.165 59.243 33.973 1 57.93 ? O1 EDO 601 A 1 HETATM 3 C C2 EDO . . . C 3 -4.326 57.01 33.326 1 64.45 ? C2 EDO 601 A 1 HETATM 4 O O2 EDO . . . C 3 -4.658 55.609 33.326 1 64.66 ? O2 EDO 601 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 35 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 299 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 4 #