data_5JK3 # _model_server_result.job_id WgvzYheVvrOTK-qJyBNEEA _model_server_result.datetime_utc '2024-11-24 23:26:36' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5jk3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":601}' # _entry.id 5JK3 # _exptl.entry_id 5JK3 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 370.793 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description ~{N}-[2-[5-chloranyl-2-[(1-methylpyrazol-4-yl)amino]pyrimidin-4-yl]oxyphenyl]prop-2-enamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5JK3 _cell.length_a 58.272 _cell.length_b 133.585 _cell.length_c 144.202 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5JK3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 148 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 174 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id C25 _struct_conn.ptnr2_label_comp_id 6L4 _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id 6L4 _struct_conn.ptnr2_auth_seq_id 601 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.591 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C17 H15 Cl N6 O2' _chem_comp.formula_weight 370.793 _chem_comp.id 6L4 _chem_comp.mon_nstd_flag . _chem_comp.name ~{N}-[2-[5-chloranyl-2-[(1-methylpyrazol-4-yl)amino]pyrimidin-4-yl]oxyphenyl]prop-2-enamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms N-(2-((5-chloro-2-((1-methyl-1H-pyrazol-4-yl)amino)pyrimidin-4-yl)oxy)phenyl)acrylamide # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O26 C23 6L4 doub 1 n n C10 N09 6L4 sing 2 n n C24 C23 6L4 sing 3 n n C24 C25 6L4 doub 4 n n C23 N22 6L4 sing 5 n n C20 C19 6L4 doub 6 n y C20 C21 6L4 sing 7 n y C19 C18 6L4 sing 8 n y N09 N11 6L4 sing 9 n y N09 C08 6L4 sing 10 n y N11 C12 6L4 doub 11 n y C08 C07 6L4 doub 12 n y N22 C21 6L4 sing 13 n n C21 C16 6L4 doub 14 n y C18 C17 6L4 doub 15 n y C12 C07 6L4 sing 16 n y C07 N06 6L4 sing 17 n n N06 C05 6L4 sing 18 n n C16 C17 6L4 sing 19 n y C16 O15 6L4 sing 20 n n N13 C05 6L4 doub 21 n y N13 C14 6L4 sing 22 n y C05 N04 6L4 sing 23 n y O15 C14 6L4 sing 24 n n C14 C02 6L4 doub 25 n y N04 C03 6L4 doub 26 n y C02 C03 6L4 sing 27 n y C02 CL01 6L4 sing 28 n n C10 H1 6L4 sing 29 n n C10 H2 6L4 sing 30 n n C10 H3 6L4 sing 31 n n C17 H4 6L4 sing 32 n n C20 H5 6L4 sing 33 n n C24 H6 6L4 sing 34 n n C03 H8 6L4 sing 35 n n N06 H9 6L4 sing 36 n n C08 H10 6L4 sing 37 n n C12 H11 6L4 sing 38 n n C18 H12 6L4 sing 39 n n C19 H13 6L4 sing 40 n n N22 H14 6L4 sing 41 n n C25 H15 6L4 sing 42 n n C25 H16 6L4 sing 43 n n # _atom_sites.entry_id 5JK3 _atom_sites.fract_transf_matrix[1][1] 0.017161 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007486 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006935 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # _pdbx_nonpoly_scheme.asym_id B _pdbx_nonpoly_scheme.entity_id 2 _pdbx_nonpoly_scheme.mon_id 6L4 _pdbx_nonpoly_scheme.pdb_strand_id A _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 601 _pdbx_nonpoly_scheme.auth_seq_num 1 _pdbx_nonpoly_scheme.pdb_mon_id 6L4 _pdbx_nonpoly_scheme.auth_mon_id LIG _pdbx_nonpoly_scheme.pdb_ins_code . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 6L4 . . . B 2 -18.062 -51.398 -19.42 1 88.76 ? C10 6L4 601 A 1 HETATM 2 C C17 6L4 . . . B 2 -14.843 -51.718 -16.954 1 106.32 ? C17 6L4 601 A 1 HETATM 3 C C20 6L4 . . . B 2 -13.227 -52.904 -18.87 1 96.23 ? C20 6L4 601 A 1 HETATM 4 C C21 6L4 . . . B 2 -12.69 -52.001 -17.966 1 96.7 ? C21 6L4 601 A 1 HETATM 5 C C24 6L4 . . . B 2 -9.334 -50.276 -18.972 1 110 ? C24 6L4 601 A 1 HETATM 6 CL CL01 6L4 . . . B 2 -11.114 -48.491 -14.745 1 100.22 ? CL01 6L4 601 A 1 HETATM 7 C C02 6L4 . . . B 2 -12.722 -48.174 -15.448 1 92.44 ? C02 6L4 601 A 1 HETATM 8 C C03 6L4 . . . B 2 -13.278 -46.904 -15.406 1 93.51 ? C03 6L4 601 A 1 HETATM 9 N N04 6L4 . . . B 2 -14.47 -46.692 -15.934 1 85.63 ? N04 6L4 601 A 1 HETATM 10 C C05 6L4 . . . B 2 -15.145 -47.672 -16.503 1 92.03 ? C05 6L4 601 A 1 HETATM 11 N N06 6L4 . . . B 2 -16.454 -47.364 -17.065 1 90.86 ? N06 6L4 601 A 1 HETATM 12 C C07 6L4 . . . B 2 -17.322 -48.366 -17.67 1 85.8 ? C07 6L4 601 A 1 HETATM 13 C C08 6L4 . . . B 2 -16.94 -49.523 -18.306 1 87.83 ? C08 6L4 601 A 1 HETATM 14 N N09 6L4 . . . B 2 -18.032 -50.131 -18.707 1 103.6 ? N09 6L4 601 A 1 HETATM 15 N N11 6L4 . . . B 2 -19.139 -49.402 -18.362 1 88.79 ? N11 6L4 601 A 1 HETATM 16 C C12 6L4 . . . B 2 -18.711 -48.307 -17.722 1 88.75 ? C12 6L4 601 A 1 HETATM 17 N N13 6L4 . . . B 2 -14.653 -48.9 -16.565 1 100.15 ? N13 6L4 601 A 1 HETATM 18 C C14 6L4 . . . B 2 -13.462 -49.185 -16.06 1 93.79 ? C14 6L4 601 A 1 HETATM 19 O O15 6L4 . . . B 2 -12.91 -50.49 -16.102 1 95.75 ? O15 6L4 601 A 1 HETATM 20 C C16 6L4 . . . B 2 -13.496 -51.391 -17.011 1 101.82 ? C16 6L4 601 A 1 HETATM 21 C C18 6L4 . . . B 2 -15.386 -52.619 -17.86 1 91.98 ? C18 6L4 601 A 1 HETATM 22 C C19 6L4 . . . B 2 -14.578 -53.214 -18.818 1 95.28 ? C19 6L4 601 A 1 HETATM 23 N N22 6L4 . . . B 2 -11.276 -51.673 -18.015 1 101.09 ? N22 6L4 601 A 1 HETATM 24 C C23 6L4 . . . B 2 -10.817 -50.635 -18.92 1 103.9 ? C23 6L4 601 A 1 HETATM 25 C C25 6L4 . . . B 2 -9.096 -48.904 -18.354 1 110.9 ? C25 6L4 601 A 1 HETATM 26 O O26 6L4 . . . B 2 -11.591 -50.067 -19.607 1 101.04 ? O26 6L4 601 A 1 # _model_server_stats.io_time_ms 60 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 310 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 26 #