data_5JK8
#
_model_server_result.job_id            jVV3Fypk6-tTOOa6kv1h4A 
_model_server_result.datetime_utc      '2024-11-27 21:11:31' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5jk8 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"G","auth_seq_id":501}' 
#
_entry.id    5JK8 
#
_exptl.entry_id    5JK8 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              302.368 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "PIPERAZINE-N,N'-BIS(2-ETHANESULFONIC ACID)" 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          110.08 
_cell.angle_gamma         90 
_cell.entry_id            5JK8 
_cell.length_a            71.516 
_cell.length_b            85.668 
_cell.length_c            73.482 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5JK8 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 G N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 214 A CYS 191 1_555 A SG CYS 345 A CYS 322 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf2 B SG CYS 214 B CYS 191 1_555 B SG CYS 345 B CYS 322 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
metalc ? metalc1 A NE2 HIS 296 A HIS 273 1_555 E FE FE . A FE 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? 
metalc ? metalc2 A NE2 HIS 301 A HIS 278 1_555 E FE FE . A FE 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.959 ? 
metalc ? metalc3 A OE1 GLU 341 A GLU 318 1_555 E FE FE . A FE 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.448 ? 
metalc ? metalc4 A OE2 GLU 341 A GLU 318 1_555 E FE FE . A FE 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.3 ? 
metalc ? metalc5 E FE FE . A FE 703 1_555 K O HOH . A HOH 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.742 ? 
metalc ? metalc6 E FE FE . A FE 703 1_555 K O HOH . A HOH 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.237 ? 
metalc ? metalc7 B NE2 HIS 296 B HIS 273 1_555 I FE FE . B FE 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.105 ? 
metalc ? metalc8 B NE2 HIS 301 B HIS 278 1_555 I FE FE . B FE 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.961 ? 
metalc ? metalc9 B OE1 GLU 341 B GLU 318 1_555 I FE FE . B FE 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.339 ? 
metalc ? metalc10 B OE2 GLU 341 B GLU 318 1_555 I FE FE . B FE 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.602 ? 
metalc ? metalc11 I FE FE . B FE 503 1_555 L O HOH . B HOH 608 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.72 ? 
metalc ? metalc12 I FE FE . B FE 503 1_555 L O HOH . B HOH 622 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.011 ? 
#
_chem_comp.formula           'C8 H18 N2 O6 S2' 
_chem_comp.formula_weight    302.368 
_chem_comp.id                PIN 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "PIPERAZINE-N,N'-BIS(2-ETHANESULFONIC ACID)" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'PIPES;1,4-PIPERAZINEDIETHANESULFONIC ACID' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 PIN sing 312 n n 
C1 S1 PIN sing 313 n n 
C1 H11 PIN sing 314 n n 
C1 H12 PIN sing 315 n n 
C2 N1 PIN sing 316 n n 
C2 H21 PIN sing 317 n n 
C2 H22 PIN sing 318 n n 
N1 C3 PIN sing 319 n n 
N1 C4 PIN sing 320 n n 
C3 C4' PIN sing 321 n n 
C3 H31 PIN sing 322 n n 
C3 H32 PIN sing 323 n n 
C4 C3' PIN sing 324 n n 
C4 H41 PIN sing 325 n n 
C4 H42 PIN sing 326 n n 
C1' C2' PIN sing 327 n n 
C1' S1' PIN sing 328 n n 
C1' "H1'1" PIN sing 329 n n 
C1' "H1'2" PIN sing 330 n n 
C2' N1' PIN sing 331 n n 
C2' "H2'1" PIN sing 332 n n 
C2' "H2'2" PIN sing 333 n n 
N1' C3' PIN sing 334 n n 
N1' C4' PIN sing 335 n n 
C3' "H3'1" PIN sing 336 n n 
C3' "H3'2" PIN sing 337 n n 
C4' "H4'1" PIN sing 338 n n 
C4' "H4'2" PIN sing 339 n n 
S1 O1 PIN doub 340 n n 
S1 O2 PIN doub 341 n n 
S1 O3 PIN sing 342 n n 
S1' O1' PIN doub 343 n n 
S1' O2' PIN doub 344 n n 
S1' O3' PIN sing 345 n n 
O3 HO3 PIN sing 346 n n 
O3' HO3' PIN sing 347 n n 
#
_atom_sites.entry_id                     5JK8 
_atom_sites.fract_transf_matrix[1][1]    0.013983 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.005112 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011673 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.01449 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 PIN A 1 701 701 PIN PIN . 
D 3 HBI A 1 702 601 HBI HBI . 
E 4 FE A 1 703 501 FE FE . 
F 5 NLE A 1 704 901 NLE NLE . 
G 2 PIN B 1 501 702 PIN PIN . 
H 3 HBI B 1 502 602 HBI HBI . 
I 4 FE B 1 503 502 FE FE . 
J 5 NLE B 1 504 902 NLE NLE . 
K 6 HOH A 1 801 122 HOH HOH . 
K 6 HOH A 2 802 76 HOH HOH . 
K 6 HOH A 3 803 84 HOH HOH . 
K 6 HOH A 4 804 79 HOH HOH . 
K 6 HOH A 5 805 95 HOH HOH . 
K 6 HOH A 6 806 63 HOH HOH . 
K 6 HOH A 7 807 30 HOH HOH . 
K 6 HOH A 8 808 89 HOH HOH . 
K 6 HOH A 9 809 45 HOH HOH . 
K 6 HOH A 10 810 118 HOH HOH . 
K 6 HOH A 11 811 5 HOH HOH . 
K 6 HOH A 12 812 24 HOH HOH . 
K 6 HOH A 13 813 91 HOH HOH . 
K 6 HOH A 14 814 72 HOH HOH . 
K 6 HOH A 15 815 82 HOH HOH . 
K 6 HOH A 16 816 77 HOH HOH . 
K 6 HOH A 17 817 51 HOH HOH . 
K 6 HOH A 18 818 29 HOH HOH . 
K 6 HOH A 19 819 8 HOH HOH . 
K 6 HOH A 20 820 80 HOH HOH . 
K 6 HOH A 21 821 4 HOH HOH . 
K 6 HOH A 22 822 44 HOH HOH . 
K 6 HOH A 23 823 6 HOH HOH . 
K 6 HOH A 24 824 81 HOH HOH . 
K 6 HOH A 25 825 98 HOH HOH . 
K 6 HOH A 26 826 2 HOH HOH . 
K 6 HOH A 27 827 9 HOH HOH . 
K 6 HOH A 28 828 26 HOH HOH . 
K 6 HOH A 29 829 109 HOH HOH . 
L 6 HOH B 1 601 121 HOH HOH . 
L 6 HOH B 2 602 99 HOH HOH . 
L 6 HOH B 3 603 78 HOH HOH . 
L 6 HOH B 4 604 11 HOH HOH . 
L 6 HOH B 5 605 67 HOH HOH . 
L 6 HOH B 6 606 93 HOH HOH . 
L 6 HOH B 7 607 12 HOH HOH . 
L 6 HOH B 8 608 34 HOH HOH . 
L 6 HOH B 9 609 22 HOH HOH . 
L 6 HOH B 10 610 18 HOH HOH . 
L 6 HOH B 11 611 19 HOH HOH . 
L 6 HOH B 12 612 23 HOH HOH . 
L 6 HOH B 13 613 14 HOH HOH . 
L 6 HOH B 14 614 60 HOH HOH . 
L 6 HOH B 15 615 10 HOH HOH . 
L 6 HOH B 16 616 104 HOH HOH . 
L 6 HOH B 17 617 20 HOH HOH . 
L 6 HOH B 18 618 75 HOH HOH . 
L 6 HOH B 19 619 94 HOH HOH . 
L 6 HOH B 20 620 13 HOH HOH . 
L 6 HOH B 21 621 61 HOH HOH . 
L 6 HOH B 22 622 120 HOH HOH . 
L 6 HOH B 23 623 17 HOH HOH . 
L 6 HOH B 24 624 15 HOH HOH . 
L 6 HOH B 25 625 7 HOH HOH . 
L 6 HOH B 26 626 57 HOH HOH . 
L 6 HOH B 27 627 21 HOH HOH . 
L 6 HOH B 28 628 73 HOH HOH . 
L 6 HOH B 29 629 107 HOH HOH . 
L 6 HOH B 30 630 56 HOH HOH . 
L 6 HOH B 31 631 16 HOH HOH . 
L 6 HOH B 32 632 111 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 PIN . . . G 2 53.543 -9.712 25.768 1 91.27 ? C1 PIN 501 B 1 
HETATM 2 C C2 PIN . . . G 2 53.067 -10.441 27.022 1 86.73 ? C2 PIN 501 B 1 
HETATM 3 N N1 PIN . . . G 2 52.199 -11.589 26.727 1 91.08 ? N1 PIN 501 B 1 
HETATM 4 C C3 PIN . . . G 2 51.299 -11.752 27.887 1 91.62 ? C3 PIN 501 B 1 
HETATM 5 C C4 PIN . . . G 2 53.051 -12.775 26.564 0.31 92.97 ? C4 PIN 501 B 1 
HETATM 6 C C1' PIN . . . G 2 51.465 -16.606 28.134 1 95.14 ? C1' PIN 501 B 1 
HETATM 7 C C2' PIN . . . G 2 50.635 -15.414 27.67 1 95.52 ? C2' PIN 501 B 1 
HETATM 8 N N1' PIN . . . G 2 51.42 -14.175 27.731 1 94.37 ? N1' PIN 501 B 1 
HETATM 9 C C3' PIN . . . G 2 52.217 -14.038 26.502 0.77 94.48 ? C3' PIN 501 B 1 
HETATM 10 C C4' PIN . . . G 2 50.505 -13.033 27.826 1 91.92 ? C4' PIN 501 B 1 
HETATM 11 S S1 PIN . . . G 2 53.953 -8.003 26.267 1 90.51 ? S1 PIN 501 B 1 
HETATM 12 S S1' PIN . . . G 2 50.718 -17.272 29.664 0.07 83.84 ? S1' PIN 501 B 1 
HETATM 13 O O1 PIN . . . G 2 55.057 -7.446 25.362 1 93.6 ? O1 PIN 501 B 1 
HETATM 14 O O2 PIN . . . G 2 52.712 -7.122 26.164 0.14 89.09 ? O2 PIN 501 B 1 
HETATM 15 O O3 PIN . . . G 2 54.44 -8.038 27.718 0.58 91.12 ? O3 PIN 501 B 1 
HETATM 16 O O1' PIN . . . G 2 49.209 -17.447 29.454 1 74.2 ? O1' PIN 501 B 1 
HETATM 17 O O2' PIN . . . G 2 51.346 -18.635 29.935 1 92.57 ? O2' PIN 501 B 1 
HETATM 18 O O3' PIN . . . G 2 50.987 -16.329 30.849 1 84.66 ? O3' PIN 501 B 1 
#
_model_server_stats.io_time_ms              20 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    26 
_model_server_stats.query_time_ms           292 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           18 
#