data_5JK8 # _model_server_result.job_id e_uACWu69Fcl-JxMsWpbrg _model_server_result.datetime_utc '2024-11-06 15:25:20' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5jk8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":501}' # _entry.id 5JK8 # _exptl.entry_id 5JK8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 302.368 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "PIPERAZINE-N,N'-BIS(2-ETHANESULFONIC ACID)" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 110.08 _cell.angle_gamma 90 _cell.entry_id 5JK8 _cell.length_a 71.516 _cell.length_b 85.668 _cell.length_c 73.482 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5JK8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 214 A CYS 191 1_555 A SG CYS 345 A CYS 322 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf2 B SG CYS 214 B CYS 191 1_555 B SG CYS 345 B CYS 322 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? metalc ? metalc1 A NE2 HIS 296 A HIS 273 1_555 E FE FE . A FE 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? metalc ? metalc2 A NE2 HIS 301 A HIS 278 1_555 E FE FE . A FE 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.959 ? metalc ? metalc3 A OE1 GLU 341 A GLU 318 1_555 E FE FE . A FE 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.448 ? metalc ? metalc4 A OE2 GLU 341 A GLU 318 1_555 E FE FE . A FE 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.3 ? metalc ? metalc5 B NE2 HIS 296 B HIS 273 1_555 I FE FE . B FE 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.105 ? metalc ? metalc6 B NE2 HIS 301 B HIS 278 1_555 I FE FE . B FE 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.961 ? metalc ? metalc7 B OE1 GLU 341 B GLU 318 1_555 I FE FE . B FE 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.339 ? metalc ? metalc8 B OE2 GLU 341 B GLU 318 1_555 I FE FE . B FE 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.602 ? metalc ? metalc9 E FE FE . A FE 703 1_555 K O HOH . A HOH 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.742 ? metalc ? metalc10 E FE FE . A FE 703 1_555 K O HOH . A HOH 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.237 ? metalc ? metalc11 I FE FE . B FE 503 1_555 L O HOH . B HOH 608 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.72 ? metalc ? metalc12 I FE FE . B FE 503 1_555 L O HOH . B HOH 622 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.011 ? # _chem_comp.formula 'C8 H18 N2 O6 S2' _chem_comp.formula_weight 302.368 _chem_comp.id PIN _chem_comp.mon_nstd_flag . _chem_comp.name "PIPERAZINE-N,N'-BIS(2-ETHANESULFONIC ACID)" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'PIPES;1,4-PIPERAZINEDIETHANESULFONIC ACID' # _atom_sites.entry_id 5JK8 _atom_sites.fract_transf_matrix[1][1] 0.013983 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.005112 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011673 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01449 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 PIN A 1 701 701 PIN PIN . D 3 HBI A 1 702 601 HBI HBI . E 4 FE A 1 703 501 FE FE . F 5 NLE A 1 704 901 NLE NLE . G 2 PIN B 1 501 702 PIN PIN . H 3 HBI B 1 502 602 HBI HBI . I 4 FE B 1 503 502 FE FE . J 5 NLE B 1 504 902 NLE NLE . K 6 HOH A 1 801 122 HOH HOH . K 6 HOH A 2 802 76 HOH HOH . K 6 HOH A 3 803 84 HOH HOH . K 6 HOH A 4 804 79 HOH HOH . K 6 HOH A 5 805 95 HOH HOH . K 6 HOH A 6 806 63 HOH HOH . K 6 HOH A 7 807 30 HOH HOH . K 6 HOH A 8 808 89 HOH HOH . K 6 HOH A 9 809 45 HOH HOH . K 6 HOH A 10 810 118 HOH HOH . K 6 HOH A 11 811 5 HOH HOH . K 6 HOH A 12 812 24 HOH HOH . K 6 HOH A 13 813 91 HOH HOH . K 6 HOH A 14 814 72 HOH HOH . K 6 HOH A 15 815 82 HOH HOH . K 6 HOH A 16 816 77 HOH HOH . K 6 HOH A 17 817 51 HOH HOH . K 6 HOH A 18 818 29 HOH HOH . K 6 HOH A 19 819 8 HOH HOH . K 6 HOH A 20 820 80 HOH HOH . K 6 HOH A 21 821 4 HOH HOH . K 6 HOH A 22 822 44 HOH HOH . K 6 HOH A 23 823 6 HOH HOH . K 6 HOH A 24 824 81 HOH HOH . K 6 HOH A 25 825 98 HOH HOH . K 6 HOH A 26 826 2 HOH HOH . K 6 HOH A 27 827 9 HOH HOH . K 6 HOH A 28 828 26 HOH HOH . K 6 HOH A 29 829 109 HOH HOH . L 6 HOH B 1 601 121 HOH HOH . L 6 HOH B 2 602 99 HOH HOH . L 6 HOH B 3 603 78 HOH HOH . L 6 HOH B 4 604 11 HOH HOH . L 6 HOH B 5 605 67 HOH HOH . L 6 HOH B 6 606 93 HOH HOH . L 6 HOH B 7 607 12 HOH HOH . L 6 HOH B 8 608 34 HOH HOH . L 6 HOH B 9 609 22 HOH HOH . L 6 HOH B 10 610 18 HOH HOH . L 6 HOH B 11 611 19 HOH HOH . L 6 HOH B 12 612 23 HOH HOH . L 6 HOH B 13 613 14 HOH HOH . L 6 HOH B 14 614 60 HOH HOH . L 6 HOH B 15 615 10 HOH HOH . L 6 HOH B 16 616 104 HOH HOH . L 6 HOH B 17 617 20 HOH HOH . L 6 HOH B 18 618 75 HOH HOH . L 6 HOH B 19 619 94 HOH HOH . L 6 HOH B 20 620 13 HOH HOH . L 6 HOH B 21 621 61 HOH HOH . L 6 HOH B 22 622 120 HOH HOH . L 6 HOH B 23 623 17 HOH HOH . L 6 HOH B 24 624 15 HOH HOH . L 6 HOH B 25 625 7 HOH HOH . L 6 HOH B 26 626 57 HOH HOH . L 6 HOH B 27 627 21 HOH HOH . L 6 HOH B 28 628 73 HOH HOH . L 6 HOH B 29 629 107 HOH HOH . L 6 HOH B 30 630 56 HOH HOH . L 6 HOH B 31 631 16 HOH HOH . L 6 HOH B 32 632 111 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 PIN . . . G 2 53.543 -9.712 25.768 1 91.27 ? C1 PIN 501 B 1 HETATM 2 C C2 PIN . . . G 2 53.067 -10.441 27.022 1 86.73 ? C2 PIN 501 B 1 HETATM 3 N N1 PIN . . . G 2 52.199 -11.589 26.727 1 91.08 ? N1 PIN 501 B 1 HETATM 4 C C3 PIN . . . G 2 51.299 -11.752 27.887 1 91.62 ? C3 PIN 501 B 1 HETATM 5 C C4 PIN . . . G 2 53.051 -12.775 26.564 0.31 92.97 ? C4 PIN 501 B 1 HETATM 6 C C1' PIN . . . G 2 51.465 -16.606 28.134 1 95.14 ? C1' PIN 501 B 1 HETATM 7 C C2' PIN . . . G 2 50.635 -15.414 27.67 1 95.52 ? C2' PIN 501 B 1 HETATM 8 N N1' PIN . . . G 2 51.42 -14.175 27.731 1 94.37 ? N1' PIN 501 B 1 HETATM 9 C C3' PIN . . . G 2 52.217 -14.038 26.502 0.77 94.48 ? C3' PIN 501 B 1 HETATM 10 C C4' PIN . . . G 2 50.505 -13.033 27.826 1 91.92 ? C4' PIN 501 B 1 HETATM 11 S S1 PIN . . . G 2 53.953 -8.003 26.267 1 90.51 ? S1 PIN 501 B 1 HETATM 12 S S1' PIN . . . G 2 50.718 -17.272 29.664 0.07 83.84 ? S1' PIN 501 B 1 HETATM 13 O O1 PIN . . . G 2 55.057 -7.446 25.362 1 93.6 ? O1 PIN 501 B 1 HETATM 14 O O2 PIN . . . G 2 52.712 -7.122 26.164 0.14 89.09 ? O2 PIN 501 B 1 HETATM 15 O O3 PIN . . . G 2 54.44 -8.038 27.718 0.58 91.12 ? O3 PIN 501 B 1 HETATM 16 O O1' PIN . . . G 2 49.209 -17.447 29.454 1 74.2 ? O1' PIN 501 B 1 HETATM 17 O O2' PIN . . . G 2 51.346 -18.635 29.935 1 92.57 ? O2' PIN 501 B 1 HETATM 18 O O3' PIN . . . G 2 50.987 -16.329 30.849 1 84.66 ? O3' PIN 501 B 1 # _model_server_stats.io_time_ms 112 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 19 _model_server_stats.query_time_ms 291 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 18 #