data_5JK8
#
_model_server_result.job_id            t0fLqdoH_Vt26wEfjCDZTg 
_model_server_result.datetime_utc      '2024-11-27 20:57:50' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5jk8 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":502}' 
#
_entry.id    5JK8 
#
_exptl.entry_id    5JK8 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              239.231 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            7,8-DIHYDROBIOPTERIN 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          110.08 
_cell.angle_gamma         90 
_cell.entry_id            5JK8 
_cell.length_a            71.516 
_cell.length_b            85.668 
_cell.length_c            73.482 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5JK8 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 H N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 214 A CYS 191 1_555 A SG CYS 345 A CYS 322 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf2 B SG CYS 214 B CYS 191 1_555 B SG CYS 345 B CYS 322 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
metalc ? metalc1 A NE2 HIS 296 A HIS 273 1_555 E FE FE . A FE 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? 
metalc ? metalc2 A NE2 HIS 301 A HIS 278 1_555 E FE FE . A FE 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.959 ? 
metalc ? metalc3 A OE1 GLU 341 A GLU 318 1_555 E FE FE . A FE 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.448 ? 
metalc ? metalc4 A OE2 GLU 341 A GLU 318 1_555 E FE FE . A FE 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.3 ? 
metalc ? metalc5 E FE FE . A FE 703 1_555 K O HOH . A HOH 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.742 ? 
metalc ? metalc6 E FE FE . A FE 703 1_555 K O HOH . A HOH 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.237 ? 
metalc ? metalc7 B NE2 HIS 296 B HIS 273 1_555 I FE FE . B FE 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.105 ? 
metalc ? metalc8 B NE2 HIS 301 B HIS 278 1_555 I FE FE . B FE 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.961 ? 
metalc ? metalc9 B OE1 GLU 341 B GLU 318 1_555 I FE FE . B FE 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.339 ? 
metalc ? metalc10 B OE2 GLU 341 B GLU 318 1_555 I FE FE . B FE 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.602 ? 
metalc ? metalc11 I FE FE . B FE 503 1_555 L O HOH . B HOH 608 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.72 ? 
metalc ? metalc12 I FE FE . B FE 503 1_555 L O HOH . B HOH 622 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.011 ? 
#
_chem_comp.formula           'C9 H13 N5 O3' 
_chem_comp.formula_weight    239.231 
_chem_comp.id                HBI 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              7,8-DIHYDROBIOPTERIN 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 C2 HBI doub 129 n y 
N1 C8A HBI sing 130 n y 
N2 C2 HBI sing 131 n n 
N2 HN21 HBI sing 132 n n 
N2 HN22 HBI sing 133 n n 
C2 N3 HBI sing 134 n y 
N3 C4 HBI sing 135 n y 
N3 H3 HBI sing 136 n n 
C4 O4 HBI doub 137 n n 
C4 C4A HBI sing 138 n y 
C4A C8A HBI doub 139 n y 
C4A N5 HBI sing 140 n n 
C8A N8 HBI sing 141 n n 
N8 C7 HBI sing 142 n n 
N8 H8 HBI sing 143 n n 
C7 C6 HBI sing 144 n n 
C7 H71 HBI sing 145 n n 
C7 H72 HBI sing 146 n n 
C6 N5 HBI doub 147 n n 
C6 C9 HBI sing 148 n n 
C9 O9 HBI sing 149 n n 
C9 C10 HBI sing 150 n n 
C9 H9 HBI sing 151 n n 
O9 HO9 HBI sing 152 n n 
C10 O10 HBI sing 153 n n 
C10 C11 HBI sing 154 n n 
C10 H10 HBI sing 155 n n 
O10 HO1 HBI sing 156 n n 
C11 H111 HBI sing 157 n n 
C11 H112 HBI sing 158 n n 
C11 H113 HBI sing 159 n n 
#
_atom_sites.entry_id                     5JK8 
_atom_sites.fract_transf_matrix[1][1]    0.013983 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.005112 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011673 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.01449 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 PIN A 1 701 701 PIN PIN . 
D 3 HBI A 1 702 601 HBI HBI . 
E 4 FE A 1 703 501 FE FE . 
F 5 NLE A 1 704 901 NLE NLE . 
G 2 PIN B 1 501 702 PIN PIN . 
H 3 HBI B 1 502 602 HBI HBI . 
I 4 FE B 1 503 502 FE FE . 
J 5 NLE B 1 504 902 NLE NLE . 
K 6 HOH A 1 801 122 HOH HOH . 
K 6 HOH A 2 802 76 HOH HOH . 
K 6 HOH A 3 803 84 HOH HOH . 
K 6 HOH A 4 804 79 HOH HOH . 
K 6 HOH A 5 805 95 HOH HOH . 
K 6 HOH A 6 806 63 HOH HOH . 
K 6 HOH A 7 807 30 HOH HOH . 
K 6 HOH A 8 808 89 HOH HOH . 
K 6 HOH A 9 809 45 HOH HOH . 
K 6 HOH A 10 810 118 HOH HOH . 
K 6 HOH A 11 811 5 HOH HOH . 
K 6 HOH A 12 812 24 HOH HOH . 
K 6 HOH A 13 813 91 HOH HOH . 
K 6 HOH A 14 814 72 HOH HOH . 
K 6 HOH A 15 815 82 HOH HOH . 
K 6 HOH A 16 816 77 HOH HOH . 
K 6 HOH A 17 817 51 HOH HOH . 
K 6 HOH A 18 818 29 HOH HOH . 
K 6 HOH A 19 819 8 HOH HOH . 
K 6 HOH A 20 820 80 HOH HOH . 
K 6 HOH A 21 821 4 HOH HOH . 
K 6 HOH A 22 822 44 HOH HOH . 
K 6 HOH A 23 823 6 HOH HOH . 
K 6 HOH A 24 824 81 HOH HOH . 
K 6 HOH A 25 825 98 HOH HOH . 
K 6 HOH A 26 826 2 HOH HOH . 
K 6 HOH A 27 827 9 HOH HOH . 
K 6 HOH A 28 828 26 HOH HOH . 
K 6 HOH A 29 829 109 HOH HOH . 
L 6 HOH B 1 601 121 HOH HOH . 
L 6 HOH B 2 602 99 HOH HOH . 
L 6 HOH B 3 603 78 HOH HOH . 
L 6 HOH B 4 604 11 HOH HOH . 
L 6 HOH B 5 605 67 HOH HOH . 
L 6 HOH B 6 606 93 HOH HOH . 
L 6 HOH B 7 607 12 HOH HOH . 
L 6 HOH B 8 608 34 HOH HOH . 
L 6 HOH B 9 609 22 HOH HOH . 
L 6 HOH B 10 610 18 HOH HOH . 
L 6 HOH B 11 611 19 HOH HOH . 
L 6 HOH B 12 612 23 HOH HOH . 
L 6 HOH B 13 613 14 HOH HOH . 
L 6 HOH B 14 614 60 HOH HOH . 
L 6 HOH B 15 615 10 HOH HOH . 
L 6 HOH B 16 616 104 HOH HOH . 
L 6 HOH B 17 617 20 HOH HOH . 
L 6 HOH B 18 618 75 HOH HOH . 
L 6 HOH B 19 619 94 HOH HOH . 
L 6 HOH B 20 620 13 HOH HOH . 
L 6 HOH B 21 621 61 HOH HOH . 
L 6 HOH B 22 622 120 HOH HOH . 
L 6 HOH B 23 623 17 HOH HOH . 
L 6 HOH B 24 624 15 HOH HOH . 
L 6 HOH B 25 625 7 HOH HOH . 
L 6 HOH B 26 626 57 HOH HOH . 
L 6 HOH B 27 627 21 HOH HOH . 
L 6 HOH B 28 628 73 HOH HOH . 
L 6 HOH B 29 629 107 HOH HOH . 
L 6 HOH B 30 630 56 HOH HOH . 
L 6 HOH B 31 631 16 HOH HOH . 
L 6 HOH B 32 632 111 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 HBI . . . H 3 51.044 0.584 48.578 1 102.72 ? N1 HBI 502 B 1 
HETATM 2 N N2 HBI . . . H 3 51.472 2.575 47.485 1 105.16 ? N2 HBI 502 B 1 
HETATM 3 C C2 HBI . . . H 3 51.835 1.337 47.796 1 106.48 ? C2 HBI 502 B 1 
HETATM 4 N N3 HBI . . . H 3 53.052 0.833 47.303 1 110.6 ? N3 HBI 502 B 1 
HETATM 5 C C4 HBI . . . H 3 53.443 -0.469 47.631 1 107.62 ? C4 HBI 502 B 1 
HETATM 6 O O4 HBI . . . H 3 54.508 -0.916 47.201 1 102.08 ? O4 HBI 502 B 1 
HETATM 7 C C4A HBI . . . H 3 52.588 -1.233 48.43 1 108.25 ? C4A HBI 502 B 1 
HETATM 8 C C8A HBI . . . H 3 51.398 -0.673 48.9 1 104.07 ? C8A HBI 502 B 1 
HETATM 9 N N8 HBI . . . H 3 50.561 -1.442 49.711 1 97.42 ? N8 HBI 502 B 1 
HETATM 10 C C7 HBI . . . H 3 50.777 -2.903 49.802 1 95.54 ? C7 HBI 502 B 1 
HETATM 11 C C6 HBI . . . H 3 52.091 -3.286 49.486 1 101.61 ? C6 HBI 502 B 1 
HETATM 12 N N5 HBI . . . H 3 52.925 -2.482 48.798 1 105.27 ? N5 HBI 502 B 1 
HETATM 13 C C9 HBI . . . H 3 52.573 -4.534 49.913 1 104.09 ? C9 HBI 502 B 1 
HETATM 14 O O9 HBI . . . H 3 52.251 -4.72 51.3 1 108.23 ? O9 HBI 502 B 1 
HETATM 15 C C10 HBI . . . H 3 52.016 -5.721 49.116 1 99.82 ? C10 HBI 502 B 1 
HETATM 16 O O10 HBI . . . H 3 50.686 -6.003 49.544 1 106.49 ? O10 HBI 502 B 1 
HETATM 17 C C11 HBI . . . H 3 52.02 -5.421 47.62 1 92.54 ? C11 HBI 502 B 1 
#
_model_server_stats.io_time_ms              24 
_model_server_stats.parse_time_ms           18 
_model_server_stats.create_model_time_ms    28 
_model_server_stats.query_time_ms           334 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           17 
#