data_5JK8 # _model_server_result.job_id 1T4MpjTd1UNmRFmIetf7DQ _model_server_result.datetime_utc '2024-11-27 21:19:14' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5jk8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":504}' # _entry.id 5JK8 # _exptl.entry_id 5JK8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 131.173 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description NORLEUCINE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 110.08 _cell.angle_gamma 90 _cell.entry_id 5JK8 _cell.length_a 71.516 _cell.length_b 85.668 _cell.length_c 73.482 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5JK8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 F N N ? 5 J N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 214 A CYS 191 1_555 A SG CYS 345 A CYS 322 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf2 B SG CYS 214 B CYS 191 1_555 B SG CYS 345 B CYS 322 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? metalc ? metalc1 A NE2 HIS 296 A HIS 273 1_555 E FE FE . A FE 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? metalc ? metalc2 A NE2 HIS 301 A HIS 278 1_555 E FE FE . A FE 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.959 ? metalc ? metalc3 A OE1 GLU 341 A GLU 318 1_555 E FE FE . A FE 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.448 ? metalc ? metalc4 A OE2 GLU 341 A GLU 318 1_555 E FE FE . A FE 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.3 ? metalc ? metalc5 E FE FE . A FE 703 1_555 K O HOH . A HOH 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.742 ? metalc ? metalc6 E FE FE . A FE 703 1_555 K O HOH . A HOH 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.237 ? metalc ? metalc7 B NE2 HIS 296 B HIS 273 1_555 I FE FE . B FE 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.105 ? metalc ? metalc8 B NE2 HIS 301 B HIS 278 1_555 I FE FE . B FE 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.961 ? metalc ? metalc9 B OE1 GLU 341 B GLU 318 1_555 I FE FE . B FE 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.339 ? metalc ? metalc10 B OE2 GLU 341 B GLU 318 1_555 I FE FE . B FE 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.602 ? metalc ? metalc11 I FE FE . B FE 503 1_555 L O HOH . B HOH 608 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.72 ? metalc ? metalc12 I FE FE . B FE 503 1_555 L O HOH . B HOH 622 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.011 ? # _chem_comp.formula 'C6 H13 N O2' _chem_comp.formula_weight 131.173 _chem_comp.id NLE _chem_comp.mon_nstd_flag n _chem_comp.name NORLEUCINE _chem_comp.type 'l-peptide linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA NLE sing 268 n n N H NLE sing 269 n n N H2 NLE sing 270 n n CA C NLE sing 271 n n CA CB NLE sing 272 n n CA HA NLE sing 273 n n C O NLE doub 274 n n C OXT NLE sing 275 n n OXT HXT NLE sing 276 n n CB CG NLE sing 277 n n CB HB2 NLE sing 278 n n CB HB3 NLE sing 279 n n CG CD NLE sing 280 n n CG HG2 NLE sing 281 n n CG HG3 NLE sing 282 n n CD CE NLE sing 283 n n CD HD2 NLE sing 284 n n CD HD3 NLE sing 285 n n CE HE1 NLE sing 286 n n CE HE2 NLE sing 287 n n CE HE3 NLE sing 288 n n # _atom_sites.entry_id 5JK8 _atom_sites.fract_transf_matrix[1][1] 0.013983 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.005112 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011673 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01449 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 PIN A 1 701 701 PIN PIN . D 3 HBI A 1 702 601 HBI HBI . E 4 FE A 1 703 501 FE FE . F 5 NLE A 1 704 901 NLE NLE . G 2 PIN B 1 501 702 PIN PIN . H 3 HBI B 1 502 602 HBI HBI . I 4 FE B 1 503 502 FE FE . J 5 NLE B 1 504 902 NLE NLE . K 6 HOH A 1 801 122 HOH HOH . K 6 HOH A 2 802 76 HOH HOH . K 6 HOH A 3 803 84 HOH HOH . K 6 HOH A 4 804 79 HOH HOH . K 6 HOH A 5 805 95 HOH HOH . K 6 HOH A 6 806 63 HOH HOH . K 6 HOH A 7 807 30 HOH HOH . K 6 HOH A 8 808 89 HOH HOH . K 6 HOH A 9 809 45 HOH HOH . K 6 HOH A 10 810 118 HOH HOH . K 6 HOH A 11 811 5 HOH HOH . K 6 HOH A 12 812 24 HOH HOH . K 6 HOH A 13 813 91 HOH HOH . K 6 HOH A 14 814 72 HOH HOH . K 6 HOH A 15 815 82 HOH HOH . K 6 HOH A 16 816 77 HOH HOH . K 6 HOH A 17 817 51 HOH HOH . K 6 HOH A 18 818 29 HOH HOH . K 6 HOH A 19 819 8 HOH HOH . K 6 HOH A 20 820 80 HOH HOH . K 6 HOH A 21 821 4 HOH HOH . K 6 HOH A 22 822 44 HOH HOH . K 6 HOH A 23 823 6 HOH HOH . K 6 HOH A 24 824 81 HOH HOH . K 6 HOH A 25 825 98 HOH HOH . K 6 HOH A 26 826 2 HOH HOH . K 6 HOH A 27 827 9 HOH HOH . K 6 HOH A 28 828 26 HOH HOH . K 6 HOH A 29 829 109 HOH HOH . L 6 HOH B 1 601 121 HOH HOH . L 6 HOH B 2 602 99 HOH HOH . L 6 HOH B 3 603 78 HOH HOH . L 6 HOH B 4 604 11 HOH HOH . L 6 HOH B 5 605 67 HOH HOH . L 6 HOH B 6 606 93 HOH HOH . L 6 HOH B 7 607 12 HOH HOH . L 6 HOH B 8 608 34 HOH HOH . L 6 HOH B 9 609 22 HOH HOH . L 6 HOH B 10 610 18 HOH HOH . L 6 HOH B 11 611 19 HOH HOH . L 6 HOH B 12 612 23 HOH HOH . L 6 HOH B 13 613 14 HOH HOH . L 6 HOH B 14 614 60 HOH HOH . L 6 HOH B 15 615 10 HOH HOH . L 6 HOH B 16 616 104 HOH HOH . L 6 HOH B 17 617 20 HOH HOH . L 6 HOH B 18 618 75 HOH HOH . L 6 HOH B 19 619 94 HOH HOH . L 6 HOH B 20 620 13 HOH HOH . L 6 HOH B 21 621 61 HOH HOH . L 6 HOH B 22 622 120 HOH HOH . L 6 HOH B 23 623 17 HOH HOH . L 6 HOH B 24 624 15 HOH HOH . L 6 HOH B 25 625 7 HOH HOH . L 6 HOH B 26 626 57 HOH HOH . L 6 HOH B 27 627 21 HOH HOH . L 6 HOH B 28 628 73 HOH HOH . L 6 HOH B 29 629 107 HOH HOH . L 6 HOH B 30 630 56 HOH HOH . L 6 HOH B 31 631 16 HOH HOH . L 6 HOH B 32 632 111 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N NLE . . . J 5 64.413 0.058 51.284 1 68.93 ? N NLE 504 B 1 HETATM 2 C CA NLE . . . J 5 63.893 0.654 50.028 1 73.75 ? CA NLE 504 B 1 HETATM 3 C C NLE . . . J 5 64.665 1.936 49.649 1 74.01 ? C NLE 504 B 1 HETATM 4 O O NLE . . . J 5 64.468 2.404 48.503 1 61.09 ? O NLE 504 B 1 HETATM 5 O OXT NLE . . . J 5 65.432 2.43 50.516 1 80.96 ? OXT NLE 504 B 1 HETATM 6 C CB NLE . . . J 5 62.384 0.959 50.115 1 75.99 ? CB NLE 504 B 1 HETATM 7 C CG NLE . . . J 5 61.618 -0.33 50.478 1 80.2 ? CG NLE 504 B 1 HETATM 8 C CD NLE . . . J 5 60.255 -0.353 49.774 1 77.44 ? CD NLE 504 B 1 HETATM 9 C CE NLE . . . J 5 59.436 -1.57 50.221 1 72.08 ? CE NLE 504 B 1 # _model_server_stats.io_time_ms 19 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 293 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 9 #