data_5JKE # _model_server_result.job_id iPA1YUalOckCdr3hh02y6A _model_server_result.datetime_utc '2024-12-19 18:45:24' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5jke # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":302}' # _entry.id 5JKE # _exptl.entry_id 5JKE _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 96.063 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SULFATE ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5JKE _cell.length_a 64.182 _cell.length_b 141.776 _cell.length_c 144.861 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5JKE _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 2 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,F,G,H,M 1 1 C,D,I,J,K,L,N 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 F N N ? 4 K N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 5 A CYS 22 1_555 A SG CYS 132 A CYS 149 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? disulf ? disulf2 A SG CYS 8 A CYS 25 1_555 A SG CYS 135 A CYS 152 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.06 ? disulf ? disulf3 A SG CYS 118 A CYS 135 1_555 A SG CYS 142 A CYS 159 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? disulf ? disulf4 A SG CYS 122 A CYS 139 1_555 A SG CYS 148 A CYS 165 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.084 ? disulf ? disulf5 A SG CYS 165 A CYS 182 1_555 A SG CYS 216 A CYS 233 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? disulf ? disulf6 B SG CYS 12 B CYS 27 1_555 B SG CYS 40 B CYS 55 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.055 ? disulf ? disulf7 B SG CYS 32 B CYS 47 1_555 B SG CYS 80 B CYS 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf8 B SG CYS 41 B CYS 56 1_555 B SG CYS 84 B CYS 99 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf9 B SG CYS 64 B CYS 79 1_555 B SG CYS 157 B CYS 172 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? disulf ? disulf10 B SG CYS 71 B CYS 86 1_555 B SG CYS 128 B CYS 143 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? disulf ? disulf11 B SG CYS 117 B CYS 132 1_555 B SG CYS 191 B CYS 206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.059 ? disulf ? disulf12 B SG CYS 121 B CYS 136 1_555 B SG CYS 171 B CYS 186 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? disulf ? disulf13 B SG CYS 134 B CYS 149 1_555 B SG CYS 151 B CYS 166 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? disulf ? disulf14 C SG CYS 5 C CYS 22 1_555 C SG CYS 132 C CYS 149 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? disulf ? disulf15 C SG CYS 8 C CYS 25 1_555 C SG CYS 135 C CYS 152 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? disulf ? disulf16 C SG CYS 118 C CYS 135 1_555 C SG CYS 142 C CYS 159 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.055 ? disulf ? disulf17 C SG CYS 122 C CYS 139 1_555 C SG CYS 148 C CYS 165 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.125 ? disulf ? disulf18 C SG CYS 165 C CYS 182 1_555 C SG CYS 216 C CYS 233 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? disulf ? disulf19 D SG CYS 12 D CYS 27 1_555 D SG CYS 40 D CYS 55 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.068 ? disulf ? disulf20 D SG CYS 32 D CYS 47 1_555 D SG CYS 80 D CYS 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf21 D SG CYS 41 D CYS 56 1_555 D SG CYS 84 D CYS 99 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? disulf ? disulf22 D SG CYS 64 D CYS 79 1_555 D SG CYS 157 D CYS 172 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.067 ? disulf ? disulf23 D SG CYS 71 D CYS 86 1_555 D SG CYS 128 D CYS 143 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? disulf ? disulf24 D SG CYS 117 D CYS 132 1_555 D SG CYS 191 D CYS 206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.072 ? disulf ? disulf25 D SG CYS 121 D CYS 136 1_555 D SG CYS 171 D CYS 186 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? disulf ? disulf26 D SG CYS 134 D CYS 149 1_555 D SG CYS 151 D CYS 166 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? covale ? covale1 A ND2 ASN 187 A ASN 204 1_555 E C1 NAG . A NAG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.452 ? covale ? covale2 B ND2 ASN 58 B ASN 73 1_555 G C1 NAG . B NAG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.463 ? covale ? covale3 C ND2 ASN 187 C ASN 204 1_555 I C1 NAG . C NAG 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.451 ? covale ? covale4 D ND2 ASN 58 D ASN 73 1_555 J C1 NAG . D NAG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.459 ? # _chem_comp.formula 'O4 S -2' _chem_comp.formula_weight 96.063 _chem_comp.id SO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'SULFATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O1 SO4 doub 320 n n S O2 SO4 doub 321 n n S O3 SO4 sing 322 n n S O4 SO4 sing 323 n n # _atom_sites.entry_id 5JKE _atom_sites.fract_transf_matrix[1][1] 0.015581 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007053 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006903 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 NAG A 1 301 300 NAG NAG . F 4 SO4 A 1 302 1 SO4 SO4 . G 3 NAG B 1 301 300 NAG NAG . H 5 CL B 1 302 1 CL CL . I 3 NAG C 1 300 300 NAG NAG . J 3 NAG D 1 301 300 NAG NAG . K 4 SO4 D 1 302 2 SO4 SO4 . L 5 CL D 1 303 2 CL CL . M 6 HOH B 1 401 5 HOH HOH . M 6 HOH B 2 402 1 HOH HOH . M 6 HOH B 3 403 4 HOH HOH . N 6 HOH D 1 401 3 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S SO4 . . . K 4 -10.915 87.085 47.445 1 160.29 ? S SO4 302 D 1 HETATM 2 O O1 SO4 . . . K 4 -9.544 86.504 47.517 1 88.57 ? O1 SO4 302 D 1 HETATM 3 O O2 SO4 . . . K 4 -11.65 86.662 46.222 1 130.5 ? O2 SO4 302 D 1 HETATM 4 O O3 SO4 . . . K 4 -11.681 86.614 48.605 1 114.79 ? O3 SO4 302 D 1 HETATM 5 O O4 SO4 . . . K 4 -10.849 88.565 47.523 1 161.55 ? O4 SO4 302 D 1 # _model_server_stats.io_time_ms 61 _model_server_stats.parse_time_ms 22 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 312 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 5 #