data_5JKI # _model_server_result.job_id VLAUGNxm70nvM2WpYx3VLA _model_server_result.datetime_utc '2024-11-06 03:07:18' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5jki # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":301}' # _entry.id 5JKI # _exptl.entry_id 5JKI _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 356.54 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5JKI _cell.length_a 70.066 _cell.length_b 76.961 _cell.length_c 99.629 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5JKI _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 190 A HIS 171 1_555 B W WO4 . A WO4 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.833 ? covale ? covale1 A NE2 HIS 190 A HIS 171 1_555 B O4 WO4 . A WO4 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.315 ? # _chem_comp.formula 'C21 H40 O4' _chem_comp.formula_weight 356.54 _chem_comp.id OLC _chem_comp.mon_nstd_flag . _chem_comp.name '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 1-Oleoyl-R-glycerol # _atom_sites.entry_id 5JKI _atom_sites.fract_transf_matrix[1][1] 0.014272 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012994 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010037 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 WO4 A 1 300 300 WO4 WO4 . C 3 OLC A 1 301 301 OLC OLC . D 4 UNL A 1 302 302 UNL UNL . E 4 UNL A 1 303 303 UNL UNL . F 4 UNL A 1 304 304 UNL UNL . G 4 UNL A 1 305 305 UNL UNL . H 5 HOH A 1 401 421 HOH HOH . H 5 HOH A 2 402 425 HOH HOH . H 5 HOH A 3 403 414 HOH HOH . H 5 HOH A 4 404 411 HOH HOH . H 5 HOH A 5 405 431 HOH HOH . H 5 HOH A 6 406 413 HOH HOH . H 5 HOH A 7 407 406 HOH HOH . H 5 HOH A 8 408 408 HOH HOH . H 5 HOH A 9 409 420 HOH HOH . H 5 HOH A 10 410 433 HOH HOH . H 5 HOH A 11 411 429 HOH HOH . H 5 HOH A 12 412 435 HOH HOH . H 5 HOH A 13 413 409 HOH HOH . H 5 HOH A 14 414 403 HOH HOH . H 5 HOH A 15 415 402 HOH HOH . H 5 HOH A 16 416 426 HOH HOH . H 5 HOH A 17 417 407 HOH HOH . H 5 HOH A 18 418 422 HOH HOH . H 5 HOH A 19 419 401 HOH HOH . H 5 HOH A 20 420 410 HOH HOH . H 5 HOH A 21 421 418 HOH HOH . H 5 HOH A 22 422 405 HOH HOH . H 5 HOH A 23 423 419 HOH HOH . H 5 HOH A 24 424 404 HOH HOH . H 5 HOH A 25 425 412 HOH HOH . H 5 HOH A 26 426 416 HOH HOH . H 5 HOH A 27 427 432 HOH HOH . H 5 HOH A 28 428 434 HOH HOH . H 5 HOH A 29 429 436 HOH HOH . H 5 HOH A 30 430 417 HOH HOH . H 5 HOH A 31 431 424 HOH HOH . H 5 HOH A 32 432 427 HOH HOH . H 5 HOH A 33 433 438 HOH HOH . H 5 HOH A 34 434 415 HOH HOH . H 5 HOH A 35 435 423 HOH HOH . H 5 HOH A 36 436 430 HOH HOH . H 5 HOH A 37 437 428 HOH HOH . H 5 HOH A 38 438 439 HOH HOH . H 5 HOH A 39 439 437 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 OLC . . . C 3 1.026 16.633 29.517 1 62.27 ? C10 OLC 301 A 1 HETATM 2 C C9 OLC . . . C 3 1.436 16.487 28.236 1 63.53 ? C9 OLC 301 A 1 HETATM 3 C C11 OLC . . . C 3 1.893 17.224 30.608 1 60.22 ? C11 OLC 301 A 1 HETATM 4 C C8 OLC . . . C 3 2.817 16.902 27.766 1 59.47 ? C8 OLC 301 A 1 HETATM 5 C C24 OLC . . . C 3 4.78 12.124 15.668 1 61.78 ? C24 OLC 301 A 1 HETATM 6 C C12 OLC . . . C 3 1.145 18.367 31.261 1 63.78 ? C12 OLC 301 A 1 HETATM 7 C C7 OLC . . . C 3 2.87 16.959 26.251 1 55.05 ? C7 OLC 301 A 1 HETATM 8 C C6 OLC . . . C 3 2.531 15.611 25.649 1 52.52 ? C6 OLC 301 A 1 HETATM 9 C C5 OLC . . . C 3 3.512 15.255 24.55 1 58 ? C5 OLC 301 A 1 HETATM 10 C C4 OLC . . . C 3 2.804 14.374 23.544 1 51.49 ? C4 OLC 301 A 1 HETATM 11 C C3 OLC . . . C 3 3.793 13.564 22.728 1 59.39 ? C3 OLC 301 A 1 HETATM 12 C C2 OLC . . . C 3 4.123 14.25 21.414 1 60.08 ? C2 OLC 301 A 1 HETATM 13 C C21 OLC . . . C 3 4.234 12.888 17.974 1 68.9 ? C21 OLC 301 A 1 HETATM 14 C C1 OLC . . . C 3 4.397 13.225 20.33 1 67.58 ? C1 OLC 301 A 1 HETATM 15 C C22 OLC . . . C 3 5.349 12.567 17.001 1 68.4 ? C22 OLC 301 A 1 HETATM 16 O O19 OLC . . . C 3 4.316 12.035 20.574 1 71.2 ? O19 OLC 301 A 1 HETATM 17 O O25 OLC . . . C 3 5.334 12.908 14.634 1 76.09 ? O25 OLC 301 A 1 HETATM 18 O O23 OLC . . . C 3 6.145 13.714 16.816 1 68.68 ? O23 OLC 301 A 1 HETATM 19 O O20 OLC . . . C 3 4.762 13.653 19.038 1 71.54 ? O20 OLC 301 A 1 HETATM 20 H H10 OLC . . . C 3 0.123 16.344 29.749 1 74.73 ? H10 OLC 301 A 1 HETATM 21 H H9 OLC . . . C 3 0.819 16.097 27.588 1 76.24 ? H9 OLC 301 A 1 HETATM 22 H H11 OLC . . . C 3 2.727 17.556 30.221 1 72.26 ? H11 OLC 301 A 1 HETATM 23 H H11A OLC . . . C 3 2.092 16.538 31.277 1 72.26 ? H11A OLC 301 A 1 HETATM 24 H H8 OLC . . . C 3 3.03 17.785 28.13 1 71.37 ? H8 OLC 301 A 1 HETATM 25 H H8A OLC . . . C 3 3.475 16.254 28.088 1 71.37 ? H8A OLC 301 A 1 HETATM 26 H H24 OLC . . . C 3 3.806 12.234 15.676 1 74.14 ? H24 OLC 301 A 1 HETATM 27 H H24A OLC . . . C 3 5 11.181 15.516 1 74.14 ? H24A OLC 301 A 1 HETATM 28 H H12 OLC . . . C 3 0.268 18.054 31.56 1 76.54 ? H12 OLC 301 A 1 HETATM 29 H H12A OLC . . . C 3 1.03 19.092 30.615 1 76.54 ? H12A OLC 301 A 1 HETATM 30 H H7 OLC . . . C 3 2.228 17.624 25.932 1 66.06 ? H7 OLC 301 A 1 HETATM 31 H H7A OLC . . . C 3 3.77 17.219 25.971 1 66.06 ? H7A OLC 301 A 1 HETATM 32 H H6 OLC . . . C 3 2.567 14.927 26.347 1 63.02 ? H6 OLC 301 A 1 HETATM 33 H H6A OLC . . . C 3 1.627 15.643 25.276 1 63.02 ? H6A OLC 301 A 1 HETATM 34 H H5 OLC . . . C 3 3.824 16.071 24.11 1 69.6 ? H5 OLC 301 A 1 HETATM 35 H H5A OLC . . . C 3 4.273 14.774 24.931 1 69.6 ? H5A OLC 301 A 1 HETATM 36 H H4 OLC . . . C 3 2.205 13.764 24.019 1 61.78 ? H4 OLC 301 A 1 HETATM 37 H H4A OLC . . . C 3 2.277 14.936 22.942 1 61.78 ? H4A OLC 301 A 1 HETATM 38 H H3 OLC . . . C 3 4.616 13.45 23.245 1 71.27 ? H3 OLC 301 A 1 HETATM 39 H H3A OLC . . . C 3 3.408 12.684 22.542 1 71.27 ? H3A OLC 301 A 1 HETATM 40 H H2 OLC . . . C 3 3.368 14.81 21.145 1 72.1 ? H2 OLC 301 A 1 HETATM 41 H H2A OLC . . . C 3 4.915 14.812 21.534 1 72.1 ? H2A OLC 301 A 1 HETATM 42 H H21 OLC . . . C 3 3.536 13.4 17.516 1 82.68 ? H21 OLC 301 A 1 HETATM 43 H H21A OLC . . . C 3 3.854 12.055 18.325 1 82.68 ? H21A OLC 301 A 1 HETATM 44 H H22 OLC . . . C 3 5.9 11.848 17.369 1 82.08 ? H22 OLC 301 A 1 HETATM 45 H HO25 OLC . . . C 3 6.178 13.105 14.832 1 91.31 ? HO25 OLC 301 A 1 HETATM 46 H HO23 OLC . . . C 3 5.624 14.433 16.775 1 82.42 ? HO23 OLC 301 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 287 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 46 #