data_5JKV # _model_server_result.job_id RvZBClU5IdTftVKSGPS_1g _model_server_result.datetime_utc '2024-10-28 13:15:39' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5jkv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":602}' # _entry.id 5JKV # _exptl.entry_id 5JKV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 286.409 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 4-ANDROSTENE-3-17-DIONE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5JKV _cell.length_a 140.218 _cell.length_b 140.218 _cell.length_c 119.271 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5JKV _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id metalc _struct_conn.details ? _struct_conn.id metalc1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 437 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 437 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id FE _struct_conn.ptnr2_label_comp_id HEM _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id HEM _struct_conn.ptnr2_auth_seq_id 601 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.225 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C19 H26 O2' _chem_comp.formula_weight 286.409 _chem_comp.id ASD _chem_comp.mon_nstd_flag . _chem_comp.name 4-ANDROSTENE-3-17-DIONE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C10 ASD sing 76 n n C1 C2 ASD sing 77 n n C1 H11 ASD sing 78 n n C1 H12 ASD sing 79 n n C10 C19 ASD sing 80 n n C10 C5 ASD sing 81 n n C10 C9 ASD sing 82 n n C11 C12 ASD sing 83 n n C11 C9 ASD sing 84 n n C11 H111 ASD sing 85 n n C11 H112 ASD sing 86 n n C12 C13 ASD sing 87 n n C12 H121 ASD sing 88 n n C12 H122 ASD sing 89 n n C13 C14 ASD sing 90 n n C13 C17 ASD sing 91 n n C13 C18 ASD sing 92 n n C14 C15 ASD sing 93 n n C14 C8 ASD sing 94 n n C14 H14 ASD sing 95 n n C15 C16 ASD sing 96 n n C15 H151 ASD sing 97 n n C15 H152 ASD sing 98 n n C16 C17 ASD sing 99 n n C16 H161 ASD sing 100 n n C16 H162 ASD sing 101 n n C17 O2 ASD doub 102 n n C18 H181 ASD sing 103 n n C18 H182 ASD sing 104 n n C18 H183 ASD sing 105 n n C19 H191 ASD sing 106 n n C19 H192 ASD sing 107 n n C19 H193 ASD sing 108 n n C2 C3 ASD sing 109 n n C2 H21 ASD sing 110 n n C2 H22 ASD sing 111 n n C3 C4 ASD sing 112 n n C3 O1 ASD doub 113 n n C4 C5 ASD doub 114 n n C4 H4 ASD sing 115 n n C5 C6 ASD sing 116 n n C6 C7 ASD sing 117 n n C6 H61 ASD sing 118 n n C6 H62 ASD sing 119 n n C7 C8 ASD sing 120 n n C7 H71 ASD sing 121 n n C7 H72 ASD sing 122 n n C8 C9 ASD sing 123 n n C8 H8 ASD sing 124 n n C9 H9 ASD sing 125 n n # _atom_sites.entry_id 5JKV _atom_sites.fract_transf_matrix[1][1] 0.007132 _atom_sites.fract_transf_matrix[1][2] 0.004118 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008235 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008384 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEM A 1 601 600 HEM HEM . C 3 ASD A 1 602 601 ASD ASD . D 4 1PE A 1 603 602 1PE P5G . E 5 PO4 A 1 604 60 PO4 PO4 . F 5 PO4 A 1 605 61 PO4 PO4 . G 5 PO4 A 1 606 62 PO4 PO4 . H 5 PO4 A 1 607 63 PO4 PO4 . I 6 HOH A 1 701 7 HOH HOH . I 6 HOH A 2 702 30 HOH HOH . I 6 HOH A 3 703 34 HOH HOH . I 6 HOH A 4 704 41 HOH HOH . I 6 HOH A 5 705 16 HOH HOH . I 6 HOH A 6 706 2 HOH HOH . I 6 HOH A 7 707 39 HOH HOH . I 6 HOH A 8 708 20 HOH HOH . I 6 HOH A 9 709 35 HOH HOH . I 6 HOH A 10 710 21 HOH HOH . I 6 HOH A 11 711 13 HOH HOH . I 6 HOH A 12 712 22 HOH HOH . I 6 HOH A 13 713 19 HOH HOH . I 6 HOH A 14 714 6 HOH HOH . I 6 HOH A 15 715 33 HOH HOH . I 6 HOH A 16 716 3 HOH HOH . I 6 HOH A 17 717 32 HOH HOH . I 6 HOH A 18 718 43 HOH HOH . I 6 HOH A 19 719 40 HOH HOH . I 6 HOH A 20 720 17 HOH HOH . I 6 HOH A 21 721 9 HOH HOH . I 6 HOH A 22 722 18 HOH HOH . I 6 HOH A 23 723 14 HOH HOH . I 6 HOH A 24 724 24 HOH HOH . I 6 HOH A 25 725 42 HOH HOH . I 6 HOH A 26 726 10 HOH HOH . I 6 HOH A 27 727 27 HOH HOH . I 6 HOH A 28 728 5 HOH HOH . I 6 HOH A 29 729 15 HOH HOH . I 6 HOH A 30 730 12 HOH HOH . I 6 HOH A 31 731 23 HOH HOH . I 6 HOH A 32 732 11 HOH HOH . I 6 HOH A 33 733 1 HOH HOH . I 6 HOH A 34 734 26 HOH HOH . I 6 HOH A 35 735 8 HOH HOH . I 6 HOH A 36 736 37 HOH HOH . I 6 HOH A 37 737 31 HOH HOH . I 6 HOH A 38 738 28 HOH HOH . I 6 HOH A 39 739 25 HOH HOH . I 6 HOH A 40 740 38 HOH HOH . I 6 HOH A 41 741 36 HOH HOH . I 6 HOH A 42 742 4 HOH HOH . I 6 HOH A 43 743 29 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 ASD . . . C 3 87.326 51.711 45.59 1 49.53 ? C1 ASD 602 A 1 HETATM 2 C C10 ASD . . . C 3 86.009 52.423 45.979 1 49.74 ? C10 ASD 602 A 1 HETATM 3 C C11 ASD . . . C 3 86.545 54.343 44.285 1 49.09 ? C11 ASD 602 A 1 HETATM 4 C C12 ASD . . . C 3 86.591 55.852 43.988 1 50.29 ? C12 ASD 602 A 1 HETATM 5 C C13 ASD . . . C 3 85.314 56.541 44.468 1 51.32 ? C13 ASD 602 A 1 HETATM 6 C C14 ASD . . . C 3 85.182 56.277 45.973 1 50.75 ? C14 ASD 602 A 1 HETATM 7 C C15 ASD . . . C 3 84.213 57.342 46.507 1 49.98 ? C15 ASD 602 A 1 HETATM 8 C C16 ASD . . . C 3 84.644 58.602 45.748 1 51.31 ? C16 ASD 602 A 1 HETATM 9 C C17 ASD . . . C 3 85.321 58.043 44.509 1 51.46 ? C17 ASD 602 A 1 HETATM 10 C C18 ASD . . . C 3 84.107 56.156 43.594 1 51.16 ? C18 ASD 602 A 1 HETATM 11 C C19 ASD . . . C 3 84.878 51.84 45.118 1 48 ? C19 ASD 602 A 1 HETATM 12 C C2 ASD . . . C 3 87.55 50.328 46.211 1 49.46 ? C2 ASD 602 A 1 HETATM 13 C C3 ASD . . . C 3 87.391 50.462 47.708 1 51.01 ? C3 ASD 602 A 1 HETATM 14 C C4 ASD . . . C 3 86.297 51.309 48.249 1 49.5 ? C4 ASD 602 A 1 HETATM 15 C C5 ASD . . . C 3 85.677 52.228 47.474 1 49.11 ? C5 ASD 602 A 1 HETATM 16 C C6 ASD . . . C 3 84.626 53.089 48.152 1 48.57 ? C6 ASD 602 A 1 HETATM 17 C C7 ASD . . . C 3 84.899 54.563 47.851 1 49.28 ? C7 ASD 602 A 1 HETATM 18 C C8 ASD . . . C 3 85.014 54.801 46.343 1 49.43 ? C8 ASD 602 A 1 HETATM 19 C C9 ASD . . . C 3 86.176 53.956 45.743 1 49.11 ? C9 ASD 602 A 1 HETATM 20 O O1 ASD . . . C 3 88.165 49.885 48.453 1 51.95 ? O1 ASD 602 A 1 HETATM 21 O O2 ASD . . . C 3 85.807 58.742 43.633 1 51.63 ? O2 ASD 602 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 325 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 21 #