data_5JLC
#
_model_server_result.job_id            Xf7guZI3zQVdjao65rGRkg 
_model_server_result.datetime_utc      '2024-10-13 15:20:49' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5jlc 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":601}' 
#
_entry.id    5JLC 
#
_exptl.entry_id    5JLC 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              616.487 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PROTOPORPHYRIN IX CONTAINING FE' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5JLC 
_cell.length_a            237.94 
_cell.length_b            237.94 
_cell.length_c            237.94 
_cell.Z_PDB               48 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5JLC 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        211 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'I 4 3 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A SG CYS 453 A CYS 472 1_555 B FE HEM . A HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.369 ? 
metalc ? metalc2 B FE HEM . A HEM 601 1_555 C N39 1YN . A 1YN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? 
#
_chem_comp.formula           'C34 H32 Fe N4 O4' 
_chem_comp.formula_weight    616.487 
_chem_comp.id                HEM 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PROTOPORPHYRIN IX CONTAINING FE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     HEME 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CHA C1A HEM sing 259 n n 
CHA C4D HEM doub 260 n n 
CHA HHA HEM sing 261 n n 
CHB C4A HEM sing 262 n n 
CHB C1B HEM doub 263 n n 
CHB HHB HEM sing 264 n n 
CHC C4B HEM sing 265 n n 
CHC C1C HEM doub 266 n n 
CHC HHC HEM sing 267 n n 
CHD C4C HEM doub 268 n n 
CHD C1D HEM sing 269 n n 
CHD HHD HEM sing 270 n n 
C1A C2A HEM doub 271 n y 
C1A NA HEM sing 272 n y 
C2A C3A HEM sing 273 n y 
C2A CAA HEM sing 274 n n 
C3A C4A HEM doub 275 n y 
C3A CMA HEM sing 276 n n 
C4A NA HEM sing 277 n y 
CMA HMA HEM sing 278 n n 
CMA HMAA HEM sing 279 n n 
CMA HMAB HEM sing 280 n n 
CAA CBA HEM sing 281 n n 
CAA HAA HEM sing 282 n n 
CAA HAAA HEM sing 283 n n 
CBA CGA HEM sing 284 n n 
CBA HBA HEM sing 285 n n 
CBA HBAA HEM sing 286 n n 
CGA O1A HEM doub 287 n n 
CGA O2A HEM sing 288 n n 
C1B C2B HEM sing 289 n n 
C1B NB HEM sing 290 n n 
C2B C3B HEM doub 291 n n 
C2B CMB HEM sing 292 n n 
C3B C4B HEM sing 293 n n 
C3B CAB HEM sing 294 n n 
C4B NB HEM doub 295 n n 
CMB HMB HEM sing 296 n n 
CMB HMBA HEM sing 297 n n 
CMB HMBB HEM sing 298 n n 
CAB CBB HEM doub 299 n n 
CAB HAB HEM sing 300 n n 
CBB HBB HEM sing 301 n n 
CBB HBBA HEM sing 302 n n 
C1C C2C HEM sing 303 n y 
C1C NC HEM sing 304 n y 
C2C C3C HEM doub 305 n y 
C2C CMC HEM sing 306 n n 
C3C C4C HEM sing 307 n y 
C3C CAC HEM sing 308 n n 
C4C NC HEM sing 309 n y 
CMC HMC HEM sing 310 n n 
CMC HMCA HEM sing 311 n n 
CMC HMCB HEM sing 312 n n 
CAC CBC HEM doub 313 n n 
CAC HAC HEM sing 314 n n 
CBC HBC HEM sing 315 n n 
CBC HBCA HEM sing 316 n n 
C1D C2D HEM sing 317 n n 
C1D ND HEM doub 318 n n 
C2D C3D HEM doub 319 n n 
C2D CMD HEM sing 320 n n 
C3D C4D HEM sing 321 n n 
C3D CAD HEM sing 322 n n 
C4D ND HEM sing 323 n n 
CMD HMD HEM sing 324 n n 
CMD HMDA HEM sing 325 n n 
CMD HMDB HEM sing 326 n n 
CAD CBD HEM sing 327 n n 
CAD HAD HEM sing 328 n n 
CAD HADA HEM sing 329 n n 
CBD CGD HEM sing 330 n n 
CBD HBD HEM sing 331 n n 
CBD HBDA HEM sing 332 n n 
CGD O1D HEM doub 333 n n 
CGD O2D HEM sing 334 n n 
O2A H2A HEM sing 335 n n 
O2D H2D HEM sing 336 n n 
FE NA HEM sing 337 n n 
FE NB HEM sing 338 n n 
FE NC HEM sing 339 n n 
FE ND HEM sing 340 n n 
#
_atom_sites.entry_id                     5JLC 
_atom_sites.fract_transf_matrix[1][1]    0.004203 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.004203 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.004203 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 HEM A 1 601 601 HEM HEM . 
C 3 1YN A 1 602 602 1YN 1YN . 
D 4 PGE A 1 603 1 PGE PGE . 
E 5 1PE A 1 604 1 1PE 1PE . 
F 6 CL A 1 605 1 CL CL . 
G 6 CL A 1 606 2 CL CL . 
H 7 HOH A 1 701 8 HOH HOH . 
H 7 HOH A 2 702 27 HOH HOH . 
H 7 HOH A 3 703 139 HOH HOH . 
H 7 HOH A 4 704 114 HOH HOH . 
H 7 HOH A 5 705 2 HOH HOH . 
H 7 HOH A 6 706 22 HOH HOH . 
H 7 HOH A 7 707 44 HOH HOH . 
H 7 HOH A 8 708 98 HOH HOH . 
H 7 HOH A 9 709 5 HOH HOH . 
H 7 HOH A 10 710 79 HOH HOH . 
H 7 HOH A 11 711 38 HOH HOH . 
H 7 HOH A 12 712 1 HOH HOH . 
H 7 HOH A 13 713 61 HOH HOH . 
H 7 HOH A 14 714 82 HOH HOH . 
H 7 HOH A 15 715 32 HOH HOH . 
H 7 HOH A 16 716 20 HOH HOH . 
H 7 HOH A 17 717 45 HOH HOH . 
H 7 HOH A 18 718 72 HOH HOH . 
H 7 HOH A 19 719 120 HOH HOH . 
H 7 HOH A 20 720 50 HOH HOH . 
H 7 HOH A 21 721 15 HOH HOH . 
H 7 HOH A 22 722 4 HOH HOH . 
H 7 HOH A 23 723 37 HOH HOH . 
H 7 HOH A 24 724 66 HOH HOH . 
H 7 HOH A 25 725 87 HOH HOH . 
H 7 HOH A 26 726 30 HOH HOH . 
H 7 HOH A 27 727 14 HOH HOH . 
H 7 HOH A 28 728 51 HOH HOH . 
H 7 HOH A 29 729 10 HOH HOH . 
H 7 HOH A 30 730 21 HOH HOH . 
H 7 HOH A 31 731 9 HOH HOH . 
H 7 HOH A 32 732 11 HOH HOH . 
H 7 HOH A 33 733 137 HOH HOH . 
H 7 HOH A 34 734 54 HOH HOH . 
H 7 HOH A 35 735 29 HOH HOH . 
H 7 HOH A 36 736 28 HOH HOH . 
H 7 HOH A 37 737 35 HOH HOH . 
H 7 HOH A 38 738 77 HOH HOH . 
H 7 HOH A 39 739 56 HOH HOH . 
H 7 HOH A 40 740 41 HOH HOH . 
H 7 HOH A 41 741 25 HOH HOH . 
H 7 HOH A 42 742 47 HOH HOH . 
H 7 HOH A 43 743 123 HOH HOH . 
H 7 HOH A 44 744 34 HOH HOH . 
H 7 HOH A 45 745 17 HOH HOH . 
H 7 HOH A 46 746 136 HOH HOH . 
H 7 HOH A 47 747 48 HOH HOH . 
H 7 HOH A 48 748 71 HOH HOH . 
H 7 HOH A 49 749 23 HOH HOH . 
H 7 HOH A 50 750 7 HOH HOH . 
H 7 HOH A 51 751 12 HOH HOH . 
H 7 HOH A 52 752 112 HOH HOH . 
H 7 HOH A 53 753 18 HOH HOH . 
H 7 HOH A 54 754 52 HOH HOH . 
H 7 HOH A 55 755 57 HOH HOH . 
H 7 HOH A 56 756 63 HOH HOH . 
H 7 HOH A 57 757 67 HOH HOH . 
H 7 HOH A 58 758 93 HOH HOH . 
H 7 HOH A 59 759 116 HOH HOH . 
H 7 HOH A 60 760 58 HOH HOH . 
H 7 HOH A 61 761 60 HOH HOH . 
H 7 HOH A 62 762 111 HOH HOH . 
H 7 HOH A 63 763 42 HOH HOH . 
H 7 HOH A 64 764 55 HOH HOH . 
H 7 HOH A 65 765 75 HOH HOH . 
H 7 HOH A 66 766 81 HOH HOH . 
H 7 HOH A 67 767 119 HOH HOH . 
H 7 HOH A 68 768 68 HOH HOH . 
H 7 HOH A 69 769 129 HOH HOH . 
H 7 HOH A 70 770 140 HOH HOH . 
H 7 HOH A 71 771 33 HOH HOH . 
H 7 HOH A 72 772 84 HOH HOH . 
H 7 HOH A 73 773 43 HOH HOH . 
H 7 HOH A 74 774 113 HOH HOH . 
H 7 HOH A 75 775 121 HOH HOH . 
H 7 HOH A 76 776 108 HOH HOH . 
H 7 HOH A 77 777 126 HOH HOH . 
H 7 HOH A 78 778 80 HOH HOH . 
H 7 HOH A 79 779 76 HOH HOH . 
H 7 HOH A 80 780 125 HOH HOH . 
H 7 HOH A 81 781 138 HOH HOH . 
H 7 HOH A 82 782 128 HOH HOH . 
H 7 HOH A 83 783 135 HOH HOH . 
H 7 HOH A 84 784 122 HOH HOH . 
H 7 HOH A 85 785 86 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CHA HEM . . . B 2 -36.201 67.966 -20.466 1 43.56 ? CHA HEM 601 A 1 
HETATM 2 C CHB HEM . . . B 2 -33.349 71.913 -20.494 1 37.18 ? CHB HEM 601 A 1 
HETATM 3 C CHC HEM . . . B 2 -31.171 70.327 -24.568 1 33.82 ? CHC HEM 601 A 1 
HETATM 4 C CHD HEM . . . B 2 -34.273 66.611 -24.717 1 45.28 ? CHD HEM 601 A 1 
HETATM 5 C C1A HEM . . . B 2 -35.623 69.17 -20.106 1 42.36 ? C1A HEM 601 A 1 
HETATM 6 C C2A HEM . . . B 2 -36.003 69.97 -18.958 1 38.96 ? C2A HEM 601 A 1 
HETATM 7 C C3A HEM . . . B 2 -35.216 71.067 -18.956 1 36.15 ? C3A HEM 601 A 1 
HETATM 8 C C4A HEM . . . B 2 -34.319 70.987 -20.107 1 36.92 ? C4A HEM 601 A 1 
HETATM 9 C CMA HEM . . . B 2 -35.224 72.222 -17.917 1 29.98 ? CMA HEM 601 A 1 
HETATM 10 C CAA HEM . . . B 2 -37.114 69.562 -17.947 1 33.47 ? CAA HEM 601 A 1 
HETATM 11 C CBA HEM . . . B 2 -38.506 70.074 -18.353 1 37.38 ? CBA HEM 601 A 1 
HETATM 12 C CGA HEM . . . B 2 -39.475 70.007 -17.174 1 39.97 ? CGA HEM 601 A 1 
HETATM 13 O O1A HEM . . . B 2 -40.672 70.399 -17.313 1 37.14 ? O1A HEM 601 A 1 
HETATM 14 O O2A HEM . . . B 2 -39.063 69.545 -16.068 1 37.17 ? O2A HEM 601 A 1 
HETATM 15 C C1B HEM . . . B 2 -32.488 71.81 -21.584 1 36.6 ? C1B HEM 601 A 1 
HETATM 16 C C2B HEM . . . B 2 -31.387 72.696 -21.897 1 34.28 ? C2B HEM 601 A 1 
HETATM 17 C C3B HEM . . . B 2 -30.808 72.27 -23.04 1 34.87 ? C3B HEM 601 A 1 
HETATM 18 C C4B HEM . . . B 2 -31.506 71.086 -23.466 1 34.03 ? C4B HEM 601 A 1 
HETATM 19 C CMB HEM . . . B 2 -31.018 73.924 -21.038 1 25.88 ? CMB HEM 601 A 1 
HETATM 20 C CAB HEM . . . B 2 -29.585 72.819 -23.819 1 32.2 ? CAB HEM 601 A 1 
HETATM 21 C CBB HEM . . . B 2 -28.681 73.625 -23.267 1 34.61 ? CBB HEM 601 A 1 
HETATM 22 C C1C HEM . . . B 2 -31.762 69.142 -24.937 1 36.75 ? C1C HEM 601 A 1 
HETATM 23 C C2C HEM . . . B 2 -31.328 68.252 -25.991 1 40.49 ? C2C HEM 601 A 1 
HETATM 24 C C3C HEM . . . B 2 -32.205 67.229 -26.036 1 35.85 ? C3C HEM 601 A 1 
HETATM 25 C C4C HEM . . . B 2 -33.195 67.436 -25.005 1 38.17 ? C4C HEM 601 A 1 
HETATM 26 C CMC HEM . . . B 2 -30.062 68.516 -26.854 1 34.73 ? CMC HEM 601 A 1 
HETATM 27 C CAC HEM . . . B 2 -32.227 65.991 -26.953 1 37.04 ? CAC HEM 601 A 1 
HETATM 28 C CBC HEM . . . B 2 -31.212 65.661 -27.736 1 40.11 ? CBC HEM 601 A 1 
HETATM 29 C C1D HEM . . . B 2 -35.025 66.594 -23.545 1 46.04 ? C1D HEM 601 A 1 
HETATM 30 C C2D HEM . . . B 2 -35.913 65.535 -23.077 1 48.1 ? C2D HEM 601 A 1 
HETATM 31 C C3D HEM . . . B 2 -36.453 65.9 -21.909 1 49.56 ? C3D HEM 601 A 1 
HETATM 32 C C4D HEM . . . B 2 -35.914 67.216 -21.588 1 46.93 ? C4D HEM 601 A 1 
HETATM 33 C CMD HEM . . . B 2 -36.197 64.202 -23.791 1 42.17 ? CMD HEM 601 A 1 
HETATM 34 C CAD HEM . . . B 2 -37.416 65.026 -21.05 1 37.87 ? CAD HEM 601 A 1 
HETATM 35 C CBD HEM . . . B 2 -38.786 65.64 -20.794 1 43.95 ? CBD HEM 601 A 1 
HETATM 36 C CGD HEM . . . B 2 -39.586 64.8 -19.811 1 44.39 ? CGD HEM 601 A 1 
HETATM 37 O O1D HEM . . . B 2 -39.064 63.79 -19.245 1 39.39 ? O1D HEM 601 A 1 
HETATM 38 O O2D HEM . . . B 2 -40.779 65.151 -19.583 1 42.31 ? O2D HEM 601 A 1 
HETATM 39 N NA HEM . . . B 2 -34.604 69.821 -20.773 1 35.93 ? NA HEM 601 A 1 
HETATM 40 N NB HEM . . . B 2 -32.529 70.849 -22.575 1 37.48 ? NB HEM 601 A 1 
HETATM 41 N NC HEM . . . B 2 -32.896 68.62 -24.372 1 39.8 ? NC HEM 601 A 1 
HETATM 42 N ND HEM . . . B 2 -35.06 67.592 -22.606 1 39.45 ? ND HEM 601 A 1 
HETATM 43 FE FE HEM . . . B 2 -33.641 69.143 -22.541 1 35.27 ? FE HEM 601 A 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           272 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           43 
#