data_5JLC # _model_server_result.job_id 6bCxCl6LSie1A5JtOqikcQ _model_server_result.datetime_utc '2024-10-13 15:23:08' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5jlc # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":602}' # _entry.id 5JLC # _exptl.entry_id 5JLC _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 705.633 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-[(2R)-butan-2-yl]-4-{4-[4-(4-{[(2R,4S)-2-(2,4-dichlorophenyl)-2-(1H-1,2,4-triazol-1-ylmethyl)-1,3-dioxolan-4-yl]methoxy}phenyl)piperazin-1-yl]phenyl}-2,4-dihydro-3H-1,2,4-triazol-3-one _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5JLC _cell.length_a 237.94 _cell.length_b 237.94 _cell.length_c 237.94 _cell.Z_PDB 48 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5JLC _symmetry.cell_setting ? _symmetry.Int_Tables_number 211 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 4 3 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 453 A CYS 472 1_555 B FE HEM . A HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.369 ? metalc ? metalc2 B FE HEM . A HEM 601 1_555 C N39 1YN . A 1YN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? # _chem_comp.formula 'C35 H38 Cl2 N8 O4' _chem_comp.formula_weight 705.633 _chem_comp.id 1YN _chem_comp.mon_nstd_flag . _chem_comp.name 2-[(2R)-butan-2-yl]-4-{4-[4-(4-{[(2R,4S)-2-(2,4-dichlorophenyl)-2-(1H-1,2,4-triazol-1-ylmethyl)-1,3-dioxolan-4-yl]methoxy}phenyl)piperazin-1-yl]phenyl}-2,4-dihydro-3H-1,2,4-triazol-3-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms Itraconazole # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CL8 C45 1YN sing 38 n n C45 C44 1YN doub 39 n y C45 C46 1YN sing 40 n y C44 C43 1YN sing 41 n y C46 C47 1YN doub 42 n y C43 CL9 1YN sing 43 n n C43 C42 1YN doub 44 n y C47 C42 1YN sing 45 n y C42 C34 1YN sing 46 n n O33 C32 1YN sing 47 n n O33 C34 1YN sing 48 n n C32 C31 1YN sing 49 n n C34 O35 1YN sing 50 n n C34 C36 1YN sing 51 n n C31 O35 1YN sing 52 n n C31 C30 1YN sing 53 n n C36 N37 1YN sing 54 n n O29 C30 1YN sing 55 n n O29 C26 1YN sing 56 n n N37 N41 1YN sing 57 n y N37 C38 1YN sing 58 n y N41 C40 1YN doub 59 n y C25 C26 1YN doub 60 n y C25 C24 1YN sing 61 n y C26 C27 1YN sing 62 n y C40 N39 1YN sing 63 n y C01 C02 1YN sing 64 n n C38 N39 1YN doub 65 n y C24 C23 1YN doub 66 n y C27 C28 1YN doub 67 n y C23 C28 1YN sing 68 n y C23 N20 1YN sing 69 n n C02 C03 1YN sing 70 n n N20 C19 1YN sing 71 n n N20 C21 1YN sing 72 n n C18 C19 1YN sing 73 n n C18 N17 1YN sing 74 n n C12 C13 1YN doub 75 n y C12 C11 1YN sing 76 n y C13 C14 1YN sing 77 n y C22 C21 1YN sing 78 n n C22 N17 1YN sing 79 n n N10 C09 1YN doub 80 n n N10 N05 1YN sing 81 n n C09 N08 1YN sing 82 n n C03 N05 1YN sing 83 n n C03 C04 1YN sing 84 n n N05 C06 1YN sing 85 n n C11 N08 1YN sing 86 n n C11 C16 1YN doub 87 n y O07 C06 1YN doub 88 n n C14 N17 1YN sing 89 n n C14 C15 1YN doub 90 n y N08 C06 1YN sing 91 n n C16 C15 1YN sing 92 n y C12 H1 1YN sing 93 n n C01 H2 1YN sing 94 n n C01 H3 1YN sing 95 n n C01 H4 1YN sing 96 n n C02 H5 1YN sing 97 n n C02 H6 1YN sing 98 n n C03 H7 1YN sing 99 n n C04 H8 1YN sing 100 n n C04 H9 1YN sing 101 n n C04 H10 1YN sing 102 n n C09 H11 1YN sing 103 n n C13 H12 1YN sing 104 n n C15 H13 1YN sing 105 n n C16 H14 1YN sing 106 n n C18 H15 1YN sing 107 n n C18 H16 1YN sing 108 n n C19 H17 1YN sing 109 n n C19 H18 1YN sing 110 n n C21 H19 1YN sing 111 n n C21 H20 1YN sing 112 n n C22 H21 1YN sing 113 n n C22 H22 1YN sing 114 n n C24 H23 1YN sing 115 n n C25 H24 1YN sing 116 n n C27 H25 1YN sing 117 n n C28 H26 1YN sing 118 n n C30 H27 1YN sing 119 n n C30 H28 1YN sing 120 n n C31 H29 1YN sing 121 n n C32 H30 1YN sing 122 n n C32 H31 1YN sing 123 n n C36 H32 1YN sing 124 n n C36 H33 1YN sing 125 n n C38 H34 1YN sing 126 n n C40 H35 1YN sing 127 n n C44 H36 1YN sing 128 n n C46 H37 1YN sing 129 n n C47 H38 1YN sing 130 n n # _atom_sites.entry_id 5JLC _atom_sites.fract_transf_matrix[1][1] 0.004203 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.004203 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004203 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEM A 1 601 601 HEM HEM . C 3 1YN A 1 602 602 1YN 1YN . D 4 PGE A 1 603 1 PGE PGE . E 5 1PE A 1 604 1 1PE 1PE . F 6 CL A 1 605 1 CL CL . G 6 CL A 1 606 2 CL CL . H 7 HOH A 1 701 8 HOH HOH . H 7 HOH A 2 702 27 HOH HOH . H 7 HOH A 3 703 139 HOH HOH . H 7 HOH A 4 704 114 HOH HOH . H 7 HOH A 5 705 2 HOH HOH . H 7 HOH A 6 706 22 HOH HOH . H 7 HOH A 7 707 44 HOH HOH . H 7 HOH A 8 708 98 HOH HOH . H 7 HOH A 9 709 5 HOH HOH . H 7 HOH A 10 710 79 HOH HOH . H 7 HOH A 11 711 38 HOH HOH . H 7 HOH A 12 712 1 HOH HOH . H 7 HOH A 13 713 61 HOH HOH . H 7 HOH A 14 714 82 HOH HOH . H 7 HOH A 15 715 32 HOH HOH . H 7 HOH A 16 716 20 HOH HOH . H 7 HOH A 17 717 45 HOH HOH . H 7 HOH A 18 718 72 HOH HOH . H 7 HOH A 19 719 120 HOH HOH . H 7 HOH A 20 720 50 HOH HOH . H 7 HOH A 21 721 15 HOH HOH . H 7 HOH A 22 722 4 HOH HOH . H 7 HOH A 23 723 37 HOH HOH . H 7 HOH A 24 724 66 HOH HOH . H 7 HOH A 25 725 87 HOH HOH . H 7 HOH A 26 726 30 HOH HOH . H 7 HOH A 27 727 14 HOH HOH . H 7 HOH A 28 728 51 HOH HOH . H 7 HOH A 29 729 10 HOH HOH . H 7 HOH A 30 730 21 HOH HOH . H 7 HOH A 31 731 9 HOH HOH . H 7 HOH A 32 732 11 HOH HOH . H 7 HOH A 33 733 137 HOH HOH . H 7 HOH A 34 734 54 HOH HOH . H 7 HOH A 35 735 29 HOH HOH . H 7 HOH A 36 736 28 HOH HOH . H 7 HOH A 37 737 35 HOH HOH . H 7 HOH A 38 738 77 HOH HOH . H 7 HOH A 39 739 56 HOH HOH . H 7 HOH A 40 740 41 HOH HOH . H 7 HOH A 41 741 25 HOH HOH . H 7 HOH A 42 742 47 HOH HOH . H 7 HOH A 43 743 123 HOH HOH . H 7 HOH A 44 744 34 HOH HOH . H 7 HOH A 45 745 17 HOH HOH . H 7 HOH A 46 746 136 HOH HOH . H 7 HOH A 47 747 48 HOH HOH . H 7 HOH A 48 748 71 HOH HOH . H 7 HOH A 49 749 23 HOH HOH . H 7 HOH A 50 750 7 HOH HOH . H 7 HOH A 51 751 12 HOH HOH . H 7 HOH A 52 752 112 HOH HOH . H 7 HOH A 53 753 18 HOH HOH . H 7 HOH A 54 754 52 HOH HOH . H 7 HOH A 55 755 57 HOH HOH . H 7 HOH A 56 756 63 HOH HOH . H 7 HOH A 57 757 67 HOH HOH . H 7 HOH A 58 758 93 HOH HOH . H 7 HOH A 59 759 116 HOH HOH . H 7 HOH A 60 760 58 HOH HOH . H 7 HOH A 61 761 60 HOH HOH . H 7 HOH A 62 762 111 HOH HOH . H 7 HOH A 63 763 42 HOH HOH . H 7 HOH A 64 764 55 HOH HOH . H 7 HOH A 65 765 75 HOH HOH . H 7 HOH A 66 766 81 HOH HOH . H 7 HOH A 67 767 119 HOH HOH . H 7 HOH A 68 768 68 HOH HOH . H 7 HOH A 69 769 129 HOH HOH . H 7 HOH A 70 770 140 HOH HOH . H 7 HOH A 71 771 33 HOH HOH . H 7 HOH A 72 772 84 HOH HOH . H 7 HOH A 73 773 43 HOH HOH . H 7 HOH A 74 774 113 HOH HOH . H 7 HOH A 75 775 121 HOH HOH . H 7 HOH A 76 776 108 HOH HOH . H 7 HOH A 77 777 126 HOH HOH . H 7 HOH A 78 778 80 HOH HOH . H 7 HOH A 79 779 76 HOH HOH . H 7 HOH A 80 780 125 HOH HOH . H 7 HOH A 81 781 138 HOH HOH . H 7 HOH A 82 782 128 HOH HOH . H 7 HOH A 83 783 135 HOH HOH . H 7 HOH A 84 784 122 HOH HOH . H 7 HOH A 85 785 86 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C12 1YN . . . C 3 -45.328 84.038 -22.84 1 89.25 ? C12 1YN 602 A 1 HETATM 2 C C11 1YN . . . C 3 -46.489 84.231 -22.104 1 94.11 ? C11 1YN 602 A 1 HETATM 3 C C01 1YN . . . C 3 -50.677 88.944 -23.534 1 89.06 ? C01 1YN 602 A 1 HETATM 4 C C02 1YN . . . C 3 -49.369 89.501 -22.99 1 85.31 ? C02 1YN 602 A 1 HETATM 5 C C03 1YN . . . C 3 -48.11 88.762 -23.521 1 93.37 ? C03 1YN 602 A 1 HETATM 6 C C04 1YN . . . C 3 -46.887 89.646 -23.319 1 79.82 ? C04 1YN 602 A 1 HETATM 7 N N05 1YN . . . C 3 -47.93 87.396 -22.861 1 100.38 ? N05 1YN 602 A 1 HETATM 8 C C06 1YN . . . C 3 -46.962 86.481 -23.128 1 98.18 ? C06 1YN 602 A 1 HETATM 9 O O07 1YN . . . C 3 -46.056 86.551 -23.938 1 101.98 ? O07 1YN 602 A 1 HETATM 10 N N08 1YN . . . C 3 -47.267 85.438 -22.257 1 93.47 ? N08 1YN 602 A 1 HETATM 11 C C09 1YN . . . C 3 -48.385 85.758 -21.528 1 88.38 ? C09 1YN 602 A 1 HETATM 12 N N10 1YN . . . C 3 -48.809 86.978 -21.891 1 100.45 ? N10 1YN 602 A 1 HETATM 13 C C13 1YN . . . C 3 -44.523 82.938 -22.6 1 89.94 ? C13 1YN 602 A 1 HETATM 14 C C14 1YN . . . C 3 -44.863 82.011 -21.618 1 89.48 ? C14 1YN 602 A 1 HETATM 15 C C15 1YN . . . C 3 -46.054 82.189 -20.919 1 96.86 ? C15 1YN 602 A 1 HETATM 16 C C16 1YN . . . C 3 -46.858 83.289 -21.158 1 94.12 ? C16 1YN 602 A 1 HETATM 17 N N17 1YN . . . C 3 -43.977 80.991 -21.26 1 78.92 ? N17 1YN 602 A 1 HETATM 18 C C18 1YN . . . C 3 -42.725 80.798 -22.006 1 76.91 ? C18 1YN 602 A 1 HETATM 19 C C19 1YN . . . C 3 -42.616 79.416 -22.639 1 82.46 ? C19 1YN 602 A 1 HETATM 20 N N20 1YN . . . C 3 -42.977 78.373 -21.679 1 89.53 ? N20 1YN 602 A 1 HETATM 21 C C21 1YN . . . C 3 -44.367 78.563 -21.272 1 97.17 ? C21 1YN 602 A 1 HETATM 22 C C22 1YN . . . C 3 -44.503 79.849 -20.502 1 86.17 ? C22 1YN 602 A 1 HETATM 23 C C23 1YN . . . C 3 -42.547 77.057 -21.874 1 87.45 ? C23 1YN 602 A 1 HETATM 24 C C24 1YN . . . C 3 -42.132 76.621 -23.128 1 92.44 ? C24 1YN 602 A 1 HETATM 25 C C25 1YN . . . C 3 -41.69 75.323 -23.317 1 89.26 ? C25 1YN 602 A 1 HETATM 26 C C26 1YN . . . C 3 -41.658 74.444 -22.25 1 83.03 ? C26 1YN 602 A 1 HETATM 27 C C27 1YN . . . C 3 -42.07 74.86 -20.996 1 72.57 ? C27 1YN 602 A 1 HETATM 28 C C28 1YN . . . C 3 -42.515 76.157 -20.813 1 74.81 ? C28 1YN 602 A 1 HETATM 29 O O29 1YN . . . C 3 -41.216 73.17 -22.509 1 85.35 ? O29 1YN 602 A 1 HETATM 30 C C30 1YN . . . C 3 -41.167 72.228 -21.432 1 81.29 ? C30 1YN 602 A 1 HETATM 31 C C31 1YN . . . C 3 -41.22 70.833 -22.004 1 83.77 ? C31 1YN 602 A 1 HETATM 32 C C32 1YN . . . C 3 -41.903 70.766 -23.345 1 90.33 ? C32 1YN 602 A 1 HETATM 33 O O33 1YN . . . C 3 -40.87 71.069 -24.25 1 104.77 ? O33 1YN 602 A 1 HETATM 34 C C34 1YN . . . C 3 -39.67 70.522 -23.717 1 96.49 ? C34 1YN 602 A 1 HETATM 35 O O35 1YN . . . C 3 -39.896 70.345 -22.316 1 85.54 ? O35 1YN 602 A 1 HETATM 36 C C36 1YN . . . C 3 -38.52 71.578 -23.883 1 86.39 ? C36 1YN 602 A 1 HETATM 37 N N37 1YN . . . C 3 -37.2 71.008 -23.71 1 76.24 ? N37 1YN 602 A 1 HETATM 38 C C38 1YN . . . C 3 -36.776 70.104 -22.832 1 72.7 ? C38 1YN 602 A 1 HETATM 39 N N39 1YN . . . C 3 -35.5 69.836 -23 1 62.94 ? N39 1YN 602 A 1 HETATM 40 C C40 1YN . . . C 3 -35.178 70.64 -24.032 1 61.31 ? C40 1YN 602 A 1 HETATM 41 N N41 1YN . . . C 3 -36.161 71.369 -24.507 1 77.79 ? N41 1YN 602 A 1 HETATM 42 C C42 1YN . . . C 3 -39.42 69.21 -24.444 1 96.44 ? C42 1YN 602 A 1 HETATM 43 C C43 1YN . . . C 3 -39.404 69.115 -25.839 1 96.44 ? C43 1YN 602 A 1 HETATM 44 C C44 1YN . . . C 3 -39.132 67.923 -26.48 1 96.27 ? C44 1YN 602 A 1 HETATM 45 C C45 1YN . . . C 3 -38.864 66.809 -25.717 1 101.64 ? C45 1YN 602 A 1 HETATM 46 C C46 1YN . . . C 3 -38.88 66.856 -24.345 1 97.18 ? C46 1YN 602 A 1 HETATM 47 C C47 1YN . . . C 3 -39.161 68.054 -23.719 1 92.56 ? C47 1YN 602 A 1 HETATM 48 CL CL8 1YN . . . C 3 -38.458 65.315 -26.514 1 132.18 ? CL8 1YN 602 A 1 HETATM 49 CL CL9 1YN . . . C 3 -39.714 70.495 -26.843 1 105.41 ? CL9 1YN 602 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 271 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 49 #