data_5JLC # _model_server_result.job_id AlCpeckXkgspo4W0JKcWog _model_server_result.datetime_utc '2024-11-24 10:58:17' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5jlc # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":603}' # _entry.id 5JLC # _exptl.entry_id 5JLC _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 150.173 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'TRIETHYLENE GLYCOL' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5JLC _cell.length_a 237.94 _cell.length_b 237.94 _cell.length_c 237.94 _cell.Z_PDB 48 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5JLC _symmetry.cell_setting ? _symmetry.Int_Tables_number 211 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 4 3 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 453 A CYS 472 1_555 B FE HEM . A HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.369 ? metalc ? metalc2 B FE HEM . A HEM 601 1_555 C N39 1YN . A 1YN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? # _chem_comp.formula 'C6 H14 O4' _chem_comp.formula_weight 150.173 _chem_comp.id PGE _chem_comp.mon_nstd_flag . _chem_comp.name 'TRIETHYLENE GLYCOL' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 PGE sing 449 n n C1 C2 PGE sing 450 n n C1 H1 PGE sing 451 n n C1 H12 PGE sing 452 n n O1 HO1 PGE sing 453 n n C2 O2 PGE sing 454 n n C2 H2 PGE sing 455 n n C2 H22 PGE sing 456 n n O2 C3 PGE sing 457 n n C3 C4 PGE sing 458 n n C3 H3 PGE sing 459 n n C3 H32 PGE sing 460 n n C4 O3 PGE sing 461 n n C4 H4 PGE sing 462 n n C4 H42 PGE sing 463 n n O4 C6 PGE sing 464 n n O4 HO4 PGE sing 465 n n C6 C5 PGE sing 466 n n C6 H6 PGE sing 467 n n C6 H62 PGE sing 468 n n C5 O3 PGE sing 469 n n C5 H5 PGE sing 470 n n C5 H52 PGE sing 471 n n # _atom_sites.entry_id 5JLC _atom_sites.fract_transf_matrix[1][1] 0.004203 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.004203 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004203 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEM A 1 601 601 HEM HEM . C 3 1YN A 1 602 602 1YN 1YN . D 4 PGE A 1 603 1 PGE PGE . E 5 1PE A 1 604 1 1PE 1PE . F 6 CL A 1 605 1 CL CL . G 6 CL A 1 606 2 CL CL . H 7 HOH A 1 701 8 HOH HOH . H 7 HOH A 2 702 27 HOH HOH . H 7 HOH A 3 703 139 HOH HOH . H 7 HOH A 4 704 114 HOH HOH . H 7 HOH A 5 705 2 HOH HOH . H 7 HOH A 6 706 22 HOH HOH . H 7 HOH A 7 707 44 HOH HOH . H 7 HOH A 8 708 98 HOH HOH . H 7 HOH A 9 709 5 HOH HOH . H 7 HOH A 10 710 79 HOH HOH . H 7 HOH A 11 711 38 HOH HOH . H 7 HOH A 12 712 1 HOH HOH . H 7 HOH A 13 713 61 HOH HOH . H 7 HOH A 14 714 82 HOH HOH . H 7 HOH A 15 715 32 HOH HOH . H 7 HOH A 16 716 20 HOH HOH . H 7 HOH A 17 717 45 HOH HOH . H 7 HOH A 18 718 72 HOH HOH . H 7 HOH A 19 719 120 HOH HOH . H 7 HOH A 20 720 50 HOH HOH . H 7 HOH A 21 721 15 HOH HOH . H 7 HOH A 22 722 4 HOH HOH . H 7 HOH A 23 723 37 HOH HOH . H 7 HOH A 24 724 66 HOH HOH . H 7 HOH A 25 725 87 HOH HOH . H 7 HOH A 26 726 30 HOH HOH . H 7 HOH A 27 727 14 HOH HOH . H 7 HOH A 28 728 51 HOH HOH . H 7 HOH A 29 729 10 HOH HOH . H 7 HOH A 30 730 21 HOH HOH . H 7 HOH A 31 731 9 HOH HOH . H 7 HOH A 32 732 11 HOH HOH . H 7 HOH A 33 733 137 HOH HOH . H 7 HOH A 34 734 54 HOH HOH . H 7 HOH A 35 735 29 HOH HOH . H 7 HOH A 36 736 28 HOH HOH . H 7 HOH A 37 737 35 HOH HOH . H 7 HOH A 38 738 77 HOH HOH . H 7 HOH A 39 739 56 HOH HOH . H 7 HOH A 40 740 41 HOH HOH . H 7 HOH A 41 741 25 HOH HOH . H 7 HOH A 42 742 47 HOH HOH . H 7 HOH A 43 743 123 HOH HOH . H 7 HOH A 44 744 34 HOH HOH . H 7 HOH A 45 745 17 HOH HOH . H 7 HOH A 46 746 136 HOH HOH . H 7 HOH A 47 747 48 HOH HOH . H 7 HOH A 48 748 71 HOH HOH . H 7 HOH A 49 749 23 HOH HOH . H 7 HOH A 50 750 7 HOH HOH . H 7 HOH A 51 751 12 HOH HOH . H 7 HOH A 52 752 112 HOH HOH . H 7 HOH A 53 753 18 HOH HOH . H 7 HOH A 54 754 52 HOH HOH . H 7 HOH A 55 755 57 HOH HOH . H 7 HOH A 56 756 63 HOH HOH . H 7 HOH A 57 757 67 HOH HOH . H 7 HOH A 58 758 93 HOH HOH . H 7 HOH A 59 759 116 HOH HOH . H 7 HOH A 60 760 58 HOH HOH . H 7 HOH A 61 761 60 HOH HOH . H 7 HOH A 62 762 111 HOH HOH . H 7 HOH A 63 763 42 HOH HOH . H 7 HOH A 64 764 55 HOH HOH . H 7 HOH A 65 765 75 HOH HOH . H 7 HOH A 66 766 81 HOH HOH . H 7 HOH A 67 767 119 HOH HOH . H 7 HOH A 68 768 68 HOH HOH . H 7 HOH A 69 769 129 HOH HOH . H 7 HOH A 70 770 140 HOH HOH . H 7 HOH A 71 771 33 HOH HOH . H 7 HOH A 72 772 84 HOH HOH . H 7 HOH A 73 773 43 HOH HOH . H 7 HOH A 74 774 113 HOH HOH . H 7 HOH A 75 775 121 HOH HOH . H 7 HOH A 76 776 108 HOH HOH . H 7 HOH A 77 777 126 HOH HOH . H 7 HOH A 78 778 80 HOH HOH . H 7 HOH A 79 779 76 HOH HOH . H 7 HOH A 80 780 125 HOH HOH . H 7 HOH A 81 781 138 HOH HOH . H 7 HOH A 82 782 128 HOH HOH . H 7 HOH A 83 783 135 HOH HOH . H 7 HOH A 84 784 122 HOH HOH . H 7 HOH A 85 785 86 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 PGE . . . D 4 -13.621 84.061 -9.565 1 57.82 ? C1 PGE 603 A 1 HETATM 2 O O1 PGE . . . D 4 -12.796 85.221 -9.608 1 58.11 ? O1 PGE 603 A 1 HETATM 3 C C2 PGE . . . D 4 -14.445 84.005 -8.293 1 53.91 ? C2 PGE 603 A 1 HETATM 4 O O2 PGE . . . D 4 -15.751 84.475 -8.573 1 51.11 ? O2 PGE 603 A 1 HETATM 5 C C3 PGE . . . D 4 -16.652 84.349 -7.486 1 55.45 ? C3 PGE 603 A 1 HETATM 6 C C4 PGE . . . D 4 -17.654 85.498 -7.465 1 51.92 ? C4 PGE 603 A 1 HETATM 7 O O4 PGE . . . D 4 -17.395 88.249 -10.704 1 56.62 ? O4 PGE 603 A 1 HETATM 8 C C6 PGE . . . D 4 -18.628 87.821 -10.133 1 52.32 ? C6 PGE 603 A 1 HETATM 9 C C5 PGE . . . D 4 -18.412 87.36 -8.711 1 52.31 ? C5 PGE 603 A 1 HETATM 10 O O3 PGE . . . D 4 -17.694 86.145 -8.727 1 54.84 ? O3 PGE 603 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 362 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 10 #