data_5JM4 # _model_server_result.job_id WJKviwyH4uxRIl3yJXeoDg _model_server_result.datetime_utc '2024-12-26 20:00:55' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5jm4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":301}' # _entry.id 5JM4 # _exptl.entry_id 5JM4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 122.121 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'BENZOIC ACID' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5JM4 _cell.length_a 84.92 _cell.length_b 105.74 _cell.length_c 113.93 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5JM4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 C C GLY 2 D GLY 421 1_555 C N MKD 3 D MKD 422 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.279 ? covale ? covale2 C C MKD 3 D MKD 422 1_555 C N A1G 4 D A1G 423 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.307 ? covale ? covale3 C C A1G 4 D A1G 423 1_555 C N ASP 5 D ASP 424 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale4 C C ASP 5 D ASP 424 1_555 C N MKD 6 D MKD 425 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.38 ? covale ? covale5 C C MKD 6 D MKD 425 1_555 C N LEU 7 D LEU 426 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.379 ? covale ? covale6 C C ALA 10 D ALA 429 1_555 C N 6L9 11 D 6L9 430 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.384 ? covale ? covale7 D C GLY 2 E GLY 421 1_555 D N MKD 3 E MKD 422 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.253 ? covale ? covale8 D C MKD 3 E MKD 422 1_555 D N A1G 4 E A1G 423 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.358 ? covale ? covale9 D CH MKD 3 E MKD 422 1_555 D CH MKD 6 E MKD 425 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.587 ? covale ? covale10 D C A1G 4 E A1G 423 1_555 D N ASP 5 E ASP 424 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.342 ? covale ? covale11 D C ASP 5 E ASP 424 1_555 D N MKD 6 E MKD 425 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.395 ? covale ? covale12 D C MKD 6 E MKD 425 1_555 D N LEU 7 E LEU 426 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.273 ? covale ? covale13 D C ALA 10 E ALA 429 1_555 D N 6L9 11 E 6L9 430 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.363 ? # _chem_comp.formula 'C7 H6 O2' _chem_comp.formula_weight 122.121 _chem_comp.id BEZ _chem_comp.mon_nstd_flag . _chem_comp.name 'BENZOIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C O1 BEZ doub 128 n n C O2 BEZ sing 129 n n C C1 BEZ sing 130 n n O2 HO2 BEZ sing 131 n n C1 C2 BEZ doub 132 n y C1 C6 BEZ sing 133 n y C2 C3 BEZ sing 134 n y C2 H2 BEZ sing 135 n n C3 C4 BEZ doub 136 n y C3 H3 BEZ sing 137 n n C4 C5 BEZ sing 138 n y C4 H4 BEZ sing 139 n n C5 C6 BEZ doub 140 n y C5 H5 BEZ sing 141 n n C6 H6 BEZ sing 142 n n # _atom_sites.entry_id 5JM4 _atom_sites.fract_transf_matrix[1][1] 0.011776 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009457 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008777 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 BEZ A 1 301 1 BEZ BEZ . F 3 BEZ B 1 301 2 BEZ BEZ . G 4 HOH A 1 401 84 HOH HOH . G 4 HOH A 2 402 39 HOH HOH . G 4 HOH A 3 403 12 HOH HOH . G 4 HOH A 4 404 18 HOH HOH . G 4 HOH A 5 405 91 HOH HOH . G 4 HOH A 6 406 93 HOH HOH . G 4 HOH A 7 407 49 HOH HOH . G 4 HOH A 8 408 22 HOH HOH . G 4 HOH A 9 409 82 HOH HOH . G 4 HOH A 10 410 95 HOH HOH . G 4 HOH A 11 411 26 HOH HOH . G 4 HOH A 12 412 105 HOH HOH . G 4 HOH A 13 413 90 HOH HOH . G 4 HOH A 14 414 43 HOH HOH . G 4 HOH A 15 415 38 HOH HOH . G 4 HOH A 16 416 24 HOH HOH . G 4 HOH A 17 417 32 HOH HOH . G 4 HOH A 18 418 41 HOH HOH . G 4 HOH A 19 419 80 HOH HOH . G 4 HOH A 20 420 42 HOH HOH . G 4 HOH A 21 421 48 HOH HOH . G 4 HOH A 22 422 94 HOH HOH . G 4 HOH A 23 423 30 HOH HOH . G 4 HOH A 24 424 97 HOH HOH . G 4 HOH A 25 425 51 HOH HOH . G 4 HOH A 26 426 25 HOH HOH . G 4 HOH A 27 427 54 HOH HOH . G 4 HOH A 28 428 40 HOH HOH . G 4 HOH A 29 429 9 HOH HOH . G 4 HOH A 30 430 50 HOH HOH . G 4 HOH A 31 431 55 HOH HOH . G 4 HOH A 32 432 29 HOH HOH . G 4 HOH A 33 433 92 HOH HOH . G 4 HOH A 34 434 52 HOH HOH . G 4 HOH A 35 435 44 HOH HOH . G 4 HOH A 36 436 37 HOH HOH . G 4 HOH A 37 437 46 HOH HOH . G 4 HOH A 38 438 88 HOH HOH . G 4 HOH A 39 439 28 HOH HOH . G 4 HOH A 40 440 5 HOH HOH . G 4 HOH A 41 441 86 HOH HOH . G 4 HOH A 42 442 45 HOH HOH . G 4 HOH A 43 443 4 HOH HOH . G 4 HOH A 44 444 53 HOH HOH . G 4 HOH A 45 445 83 HOH HOH . G 4 HOH A 46 446 87 HOH HOH . G 4 HOH A 47 447 16 HOH HOH . G 4 HOH A 48 448 56 HOH HOH . G 4 HOH A 49 449 96 HOH HOH . G 4 HOH A 50 450 89 HOH HOH . G 4 HOH A 51 451 10 HOH HOH . G 4 HOH A 52 452 85 HOH HOH . H 4 HOH B 1 401 103 HOH HOH . H 4 HOH B 2 402 66 HOH HOH . H 4 HOH B 3 403 68 HOH HOH . H 4 HOH B 4 404 61 HOH HOH . H 4 HOH B 5 405 15 HOH HOH . H 4 HOH B 6 406 71 HOH HOH . H 4 HOH B 7 407 62 HOH HOH . H 4 HOH B 8 408 20 HOH HOH . H 4 HOH B 9 409 13 HOH HOH . H 4 HOH B 10 410 58 HOH HOH . H 4 HOH B 11 411 69 HOH HOH . H 4 HOH B 12 412 36 HOH HOH . H 4 HOH B 13 413 67 HOH HOH . H 4 HOH B 14 414 99 HOH HOH . H 4 HOH B 15 415 14 HOH HOH . H 4 HOH B 16 416 35 HOH HOH . H 4 HOH B 17 417 60 HOH HOH . H 4 HOH B 18 418 27 HOH HOH . H 4 HOH B 19 419 3 HOH HOH . H 4 HOH B 20 420 72 HOH HOH . H 4 HOH B 21 421 65 HOH HOH . H 4 HOH B 22 422 102 HOH HOH . H 4 HOH B 23 423 57 HOH HOH . H 4 HOH B 24 424 1 HOH HOH . H 4 HOH B 25 425 31 HOH HOH . H 4 HOH B 26 426 100 HOH HOH . H 4 HOH B 27 427 23 HOH HOH . H 4 HOH B 28 428 8 HOH HOH . H 4 HOH B 29 429 34 HOH HOH . H 4 HOH B 30 430 73 HOH HOH . H 4 HOH B 31 431 101 HOH HOH . H 4 HOH B 32 432 70 HOH HOH . H 4 HOH B 33 433 7 HOH HOH . H 4 HOH B 34 434 98 HOH HOH . H 4 HOH B 35 435 17 HOH HOH . H 4 HOH B 36 436 64 HOH HOH . H 4 HOH B 37 437 104 HOH HOH . H 4 HOH B 38 438 59 HOH HOH . I 4 HOH D 1 501 47 HOH HOH . I 4 HOH D 2 502 19 HOH HOH . I 4 HOH D 3 503 11 HOH HOH . I 4 HOH D 4 504 74 HOH HOH . I 4 HOH D 5 505 76 HOH HOH . I 4 HOH D 6 506 106 HOH HOH . I 4 HOH D 7 507 75 HOH HOH . J 4 HOH E 1 501 77 HOH HOH . J 4 HOH E 2 502 78 HOH HOH . J 4 HOH E 3 503 63 HOH HOH . J 4 HOH E 4 504 81 HOH HOH . J 4 HOH E 5 505 21 HOH HOH . J 4 HOH E 6 506 79 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C BEZ . . . F 3 46.21 25.777 -10.743 0.5 54.96 ? C BEZ 301 B 1 HETATM 2 O O1 BEZ . . . F 3 45.744 26.797 -10.186 0.5 52.62 ? O1 BEZ 301 B 1 HETATM 3 O O2 BEZ . . . F 3 46.643 24.797 -10.084 0.5 51.7 ? O2 BEZ 301 B 1 HETATM 4 C C1 BEZ . . . F 3 46.263 25.714 -12.254 0.5 57.93 ? C1 BEZ 301 B 1 HETATM 5 C C2 BEZ . . . F 3 46.648 26.828 -12.999 0.5 55.44 ? C2 BEZ 301 B 1 HETATM 6 C C3 BEZ . . . F 3 46.694 26.746 -14.385 0.5 53.47 ? C3 BEZ 301 B 1 HETATM 7 C C4 BEZ . . . F 3 46.354 25.549 -15.015 0.5 54.93 ? C4 BEZ 301 B 1 HETATM 8 C C5 BEZ . . . F 3 45.969 24.428 -14.287 0.5 51.26 ? C5 BEZ 301 B 1 HETATM 9 C C6 BEZ . . . F 3 45.923 24.52 -12.909 0.5 56.42 ? C6 BEZ 301 B 1 # _model_server_stats.io_time_ms 113 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 318 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 9 #