data_5JMM # _model_server_result.job_id kBUhrY9a9I20ZBAuRztseg _model_server_result.datetime_utc '2024-11-25 11:26:49' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5jmm # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":601}' # _entry.id 5JMM # _exptl.entry_id 5JMM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 284.263 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 5,7-dihydroxy-3-(4-methoxyphenyl)-4H-chromen-4-one _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 109.76 _cell.angle_gamma 90 _cell.entry_id 5JMM _cell.length_a 54.4 _cell.length_b 81.22 _cell.length_c 58.17 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5JMM _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C GLU 83 A GLU 380 1_555 A N CSO 84 A CSO 381 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale2 A C CSO 84 A CSO 381 1_555 A N ALA 85 A ALA 382 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale3 B C GLU 83 B GLU 380 1_555 B N CSO 84 B CSO 381 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale4 B C CSO 84 B CSO 381 1_555 B N ALA 85 B ALA 382 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale5 B C LYS 232 B LYS 529 1_555 B N CSO 233 B CSO 530 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? covale ? covale6 B C CSO 233 B CSO 530 1_555 B N LYS 234 B LYS 531 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? # _chem_comp.formula 'C16 H12 O5' _chem_comp.formula_weight 284.263 _chem_comp.id QSO _chem_comp.mon_nstd_flag . _chem_comp.name 5,7-dihydroxy-3-(4-methoxyphenyl)-4H-chromen-4-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'Biochanin A' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 C2 QSO sing 313 n n O1 C8A QSO sing 314 n n C8 C8A QSO doub 315 n y C8 C7 QSO sing 316 n y C2 C3 QSO doub 317 n n O4 C7 QSO sing 318 n n C8A C4A QSO sing 319 n y C7 C6 QSO doub 320 n y C6' C5' QSO doub 321 n y C6' C1' QSO sing 322 n y C3 C1' QSO sing 323 n n C3 C4 QSO sing 324 n n C5' C4' QSO sing 325 n y C1' C2' QSO doub 326 n y C4A C4 QSO sing 327 n n C4A C5 QSO doub 328 n y CM O5 QSO sing 329 n n C6 C5 QSO sing 330 n y C4 O2 QSO doub 331 n n C4' O5 QSO sing 332 n n C4' C3' QSO doub 333 n y C2' C3' QSO sing 334 n y C5 O3 QSO sing 335 n n C2 H2 QSO sing 336 n n O4 HO4 QSO sing 337 n n C6 H6 QSO sing 338 n n C8 H8 QSO sing 339 n n C2' H2' QSO sing 340 n n C3' H3' QSO sing 341 n n C5' H5' QSO sing 342 n n C6' H6' QSO sing 343 n n O3 HO3 QSO sing 344 n n CM HM1 QSO sing 345 n n CM HM2 QSO sing 346 n n CM HM3 QSO sing 347 n n # _atom_sites.entry_id 5JMM _atom_sites.fract_transf_matrix[1][1] 0.018382 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.006602 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012312 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.018266 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 4 QSO A 1 601 1 QSO LIG . F 4 QSO B 1 601 1 QSO LIG . G 5 GOL B 1 602 1 GOL GOL . H 6 EDO B 1 603 1 EDO EDO . I 5 GOL B 1 604 1 GOL GOL . J 7 HOH A 1 701 22 HOH HOH . J 7 HOH A 2 702 187 HOH HOH . J 7 HOH A 3 703 156 HOH HOH . J 7 HOH A 4 704 21 HOH HOH . J 7 HOH A 5 705 19 HOH HOH . J 7 HOH A 6 706 18 HOH HOH . J 7 HOH A 7 707 79 HOH HOH . J 7 HOH A 8 708 153 HOH HOH . J 7 HOH A 9 709 80 HOH HOH . J 7 HOH A 10 710 45 HOH HOH . J 7 HOH A 11 711 185 HOH HOH . J 7 HOH A 12 712 179 HOH HOH . J 7 HOH A 13 713 50 HOH HOH . J 7 HOH A 14 714 213 HOH HOH . J 7 HOH A 15 715 29 HOH HOH . J 7 HOH A 16 716 58 HOH HOH . J 7 HOH A 17 717 28 HOH HOH . J 7 HOH A 18 718 65 HOH HOH . J 7 HOH A 19 719 89 HOH HOH . J 7 HOH A 20 720 20 HOH HOH . J 7 HOH A 21 721 101 HOH HOH . J 7 HOH A 22 722 6 HOH HOH . J 7 HOH A 23 723 126 HOH HOH . J 7 HOH A 24 724 97 HOH HOH . J 7 HOH A 25 725 146 HOH HOH . J 7 HOH A 26 726 150 HOH HOH . J 7 HOH A 27 727 25 HOH HOH . J 7 HOH A 28 728 91 HOH HOH . J 7 HOH A 29 729 3 HOH HOH . J 7 HOH A 30 730 14 HOH HOH . J 7 HOH A 31 731 193 HOH HOH . J 7 HOH A 32 732 148 HOH HOH . J 7 HOH A 33 733 180 HOH HOH . J 7 HOH A 34 734 40 HOH HOH . J 7 HOH A 35 735 27 HOH HOH . J 7 HOH A 36 736 154 HOH HOH . J 7 HOH A 37 737 4 HOH HOH . J 7 HOH A 38 738 47 HOH HOH . J 7 HOH A 39 739 186 HOH HOH . J 7 HOH A 40 740 56 HOH HOH . J 7 HOH A 41 741 181 HOH HOH . J 7 HOH A 42 742 184 HOH HOH . J 7 HOH A 43 743 182 HOH HOH . J 7 HOH A 44 744 147 HOH HOH . J 7 HOH A 45 745 176 HOH HOH . J 7 HOH A 46 746 149 HOH HOH . J 7 HOH A 47 747 31 HOH HOH . J 7 HOH A 48 748 157 HOH HOH . J 7 HOH A 49 749 212 HOH HOH . J 7 HOH A 50 750 113 HOH HOH . J 7 HOH A 51 751 1 HOH HOH . J 7 HOH A 52 752 177 HOH HOH . J 7 HOH A 53 753 188 HOH HOH . J 7 HOH A 54 754 76 HOH HOH . J 7 HOH A 55 755 183 HOH HOH . J 7 HOH A 56 756 135 HOH HOH . J 7 HOH A 57 757 158 HOH HOH . J 7 HOH A 58 758 161 HOH HOH . J 7 HOH A 59 759 107 HOH HOH . J 7 HOH A 60 760 72 HOH HOH . J 7 HOH A 61 761 125 HOH HOH . J 7 HOH A 62 762 155 HOH HOH . J 7 HOH A 63 763 127 HOH HOH . J 7 HOH A 64 764 140 HOH HOH . J 7 HOH A 65 765 159 HOH HOH . J 7 HOH A 66 766 160 HOH HOH . J 7 HOH A 67 767 123 HOH HOH . J 7 HOH A 68 768 204 HOH HOH . J 7 HOH A 69 769 132 HOH HOH . J 7 HOH A 70 770 133 HOH HOH . K 7 HOH B 1 701 24 HOH HOH . K 7 HOH B 2 702 73 HOH HOH . K 7 HOH B 3 703 67 HOH HOH . K 7 HOH B 4 704 163 HOH HOH . K 7 HOH B 5 705 168 HOH HOH . K 7 HOH B 6 706 198 HOH HOH . K 7 HOH B 7 707 195 HOH HOH . K 7 HOH B 8 708 49 HOH HOH . K 7 HOH B 9 709 166 HOH HOH . K 7 HOH B 10 710 92 HOH HOH . K 7 HOH B 11 711 143 HOH HOH . K 7 HOH B 12 712 174 HOH HOH . K 7 HOH B 13 713 142 HOH HOH . K 7 HOH B 14 714 94 HOH HOH . K 7 HOH B 15 715 197 HOH HOH . K 7 HOH B 16 716 93 HOH HOH . K 7 HOH B 17 717 12 HOH HOH . K 7 HOH B 18 718 173 HOH HOH . K 7 HOH B 19 719 38 HOH HOH . K 7 HOH B 20 720 11 HOH HOH . K 7 HOH B 21 721 139 HOH HOH . K 7 HOH B 22 722 214 HOH HOH . K 7 HOH B 23 723 43 HOH HOH . K 7 HOH B 24 724 96 HOH HOH . K 7 HOH B 25 725 95 HOH HOH . K 7 HOH B 26 726 169 HOH HOH . K 7 HOH B 27 727 196 HOH HOH . K 7 HOH B 28 728 15 HOH HOH . K 7 HOH B 29 729 7 HOH HOH . K 7 HOH B 30 730 170 HOH HOH . K 7 HOH B 31 731 35 HOH HOH . K 7 HOH B 32 732 206 HOH HOH . K 7 HOH B 33 733 54 HOH HOH . K 7 HOH B 34 734 55 HOH HOH . K 7 HOH B 35 735 130 HOH HOH . K 7 HOH B 36 736 119 HOH HOH . K 7 HOH B 37 737 128 HOH HOH . K 7 HOH B 38 738 104 HOH HOH . K 7 HOH B 39 739 9 HOH HOH . K 7 HOH B 40 740 8 HOH HOH . K 7 HOH B 41 741 134 HOH HOH . K 7 HOH B 42 742 16 HOH HOH . K 7 HOH B 43 743 44 HOH HOH . K 7 HOH B 44 744 88 HOH HOH . K 7 HOH B 45 745 175 HOH HOH . K 7 HOH B 46 746 17 HOH HOH . K 7 HOH B 47 747 10 HOH HOH . K 7 HOH B 48 748 46 HOH HOH . K 7 HOH B 49 749 13 HOH HOH . K 7 HOH B 50 750 151 HOH HOH . K 7 HOH B 51 751 33 HOH HOH . K 7 HOH B 52 752 61 HOH HOH . K 7 HOH B 53 753 189 HOH HOH . K 7 HOH B 54 754 202 HOH HOH . K 7 HOH B 55 755 124 HOH HOH . K 7 HOH B 56 756 42 HOH HOH . K 7 HOH B 57 757 129 HOH HOH . K 7 HOH B 58 758 59 HOH HOH . K 7 HOH B 59 759 98 HOH HOH . K 7 HOH B 60 760 136 HOH HOH . K 7 HOH B 61 761 178 HOH HOH . K 7 HOH B 62 762 71 HOH HOH . K 7 HOH B 63 763 34 HOH HOH . K 7 HOH B 64 764 137 HOH HOH . K 7 HOH B 65 765 36 HOH HOH . K 7 HOH B 66 766 60 HOH HOH . K 7 HOH B 67 767 84 HOH HOH . K 7 HOH B 68 768 41 HOH HOH . K 7 HOH B 69 769 172 HOH HOH . K 7 HOH B 70 770 199 HOH HOH . K 7 HOH B 71 771 103 HOH HOH . K 7 HOH B 72 772 167 HOH HOH . K 7 HOH B 73 773 201 HOH HOH . K 7 HOH B 74 774 190 HOH HOH . K 7 HOH B 75 775 141 HOH HOH . K 7 HOH B 76 776 57 HOH HOH . K 7 HOH B 77 777 191 HOH HOH . K 7 HOH B 78 778 164 HOH HOH . K 7 HOH B 79 779 192 HOH HOH . K 7 HOH B 80 780 64 HOH HOH . K 7 HOH B 81 781 81 HOH HOH . K 7 HOH B 82 782 203 HOH HOH . K 7 HOH B 83 783 207 HOH HOH . K 7 HOH B 84 784 138 HOH HOH . K 7 HOH B 85 785 209 HOH HOH . K 7 HOH B 86 786 211 HOH HOH . K 7 HOH B 87 787 131 HOH HOH . K 7 HOH B 88 788 32 HOH HOH . K 7 HOH B 89 789 210 HOH HOH . K 7 HOH B 90 790 205 HOH HOH . K 7 HOH B 91 791 208 HOH HOH . L 7 HOH F 1 701 194 HOH HOH . M 7 HOH G 1 701 51 HOH HOH . M 7 HOH G 2 702 144 HOH HOH . M 7 HOH G 3 703 145 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C2 QSO . . . F 4 30.641 -3.288 -22.974 1 33.24 ? C2 QSO 601 B 1 HETATM 2 C C4 QSO . . . F 4 28.413 -3.712 -22.309 1 35.34 ? C4 QSO 601 B 1 HETATM 3 O O4 QSO . . . F 4 26.578 -1.807 -27.23 1 30.76 ? O4 QSO 601 B 1 HETATM 4 C C4A QSO . . . F 4 28.02 -3.209 -23.575 1 24.7 ? C4A QSO 601 B 1 HETATM 5 C C8A QSO . . . F 4 28.913 -2.861 -24.53 1 29.74 ? C8A QSO 601 B 1 HETATM 6 C C7 QSO . . . F 4 27.087 -2.273 -26.02 1 31.28 ? C7 QSO 601 B 1 HETATM 7 C C6 QSO . . . F 4 26.17 -2.64 -25.033 1 24.52 ? C6 QSO 601 B 1 HETATM 8 C C5 QSO . . . F 4 26.644 -3.106 -23.822 1 25.68 ? C5 QSO 601 B 1 HETATM 9 C C8 QSO . . . F 4 28.463 -2.371 -25.799 1 29.31 ? C8 QSO 601 B 1 HETATM 10 C C3 QSO . . . F 4 29.768 -3.87 -22.051 1 42.75 ? C3 QSO 601 B 1 HETATM 11 O O1 QSO . . . F 4 30.263 -2.984 -24.241 1 37.64 ? O1 QSO 601 B 1 HETATM 12 C C1' QSO . . . F 4 30.301 -4.3 -20.837 1 57.72 ? C1' QSO 601 B 1 HETATM 13 O O2 QSO . . . F 4 27.568 -4.004 -21.522 1 28.66 ? O2 QSO 601 B 1 HETATM 14 C C2' QSO . . . F 4 29.668 -4.109 -19.616 1 54.47 ? C2' QSO 601 B 1 HETATM 15 C C3' QSO . . . F 4 30.27 -4.547 -18.447 1 57.09 ? C3' QSO 601 B 1 HETATM 16 C C4' QSO . . . F 4 31.51 -5.169 -18.477 1 62.88 ? C4' QSO 601 B 1 HETATM 17 C C5' QSO . . . F 4 32.145 -5.354 -19.691 1 66.95 ? C5' QSO 601 B 1 HETATM 18 C C6' QSO . . . F 4 31.544 -4.916 -20.86 1 65.13 ? C6' QSO 601 B 1 HETATM 19 O O5 QSO . . . F 4 32.11 -5.608 -17.287 1 65.06 ? O5 QSO 601 B 1 HETATM 20 O O3 QSO . . . F 4 25.807 -3.502 -22.788 1 30.7 ? O3 QSO 601 B 1 HETATM 21 C CM QSO . . . F 4 33.197 -6.482 -17.422 1 62.23 ? CM QSO 601 B 1 # _model_server_stats.io_time_ms 19 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 243 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 21 #