data_5JMS
#
_model_server_result.job_id            51nCddGJ0Zav2BII-mj1eA 
_model_server_result.datetime_utc      '2025-01-10 22:11:44' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5jms 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":601}' 
#
_entry.id    5JMS 
#
_exptl.entry_id    5JMS 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              340.81 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            N~1~-(4-{2-[(3-chlorophenyl)amino]pyrimidin-4-yl}pyridin-2-yl)ethane-1,2-diamine 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          98.62 
_cell.angle_gamma         90 
_cell.entry_id            5JMS 
_cell.length_a            48.169 
_cell.length_b            72.75 
_cell.length_c            65.276 
_cell.Z_PDB               2 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5JMS 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OD1 ASP 469 A ASP 451 1_555 C CA CA . A CA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.137 ? 
metalc ? metalc2 A OD1 ASP 471 A ASP 453 1_555 C CA CA . A CA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.468 ? 
metalc ? metalc3 A OG SER 473 A SER 455 1_555 C CA CA . A CA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.342 ? 
metalc ? metalc4 A O LYS 475 A LYS 457 1_555 C CA CA . A CA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.583 ? 
metalc ? metalc5 C CA CA . A CA 602 1_555 E O1 EDO . A EDO 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.126 ? 
metalc ? metalc6 C CA CA . A CA 602 1_555 F O HOH . A HOH 731 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.828 ? 
#
_chem_comp.formula           'C17 H17 Cl N6' 
_chem_comp.formula_weight    340.81 
_chem_comp.id                6LP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              N~1~-(4-{2-[(3-chlorophenyl)amino]pyrimidin-4-yl}pyridin-2-yl)ethane-1,2-diamine 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CLAV CAT 6LP sing 1 n n 
CAT CAS 6LP doub 2 n y 
CAT CAU 6LP sing 3 n y 
CAS CAR 6LP sing 4 n y 
CAU CAP 6LP doub 5 n y 
CAR CAQ 6LP doub 6 n y 
CAP CAQ 6LP sing 7 n y 
CAP NAO 6LP sing 8 n n 
C6 N1 6LP doub 9 n y 
C6 C5 6LP sing 10 n y 
N1 C2 6LP sing 11 n y 
CAG CAH 6LP doub 12 n y 
CAG CAF 6LP sing 13 n y 
C5 C4 6LP doub 14 n y 
C2 NAO 6LP sing 15 n n 
C2 N3 6LP doub 16 n y 
CAH NAI 6LP sing 17 n y 
C4 N3 6LP sing 18 n y 
C4 CAF 6LP sing 19 n n 
CAF CAE 6LP doub 20 n y 
NAI CAD 6LP doub 21 n y 
NAX CAA 6LP sing 22 n n 
CAE CAD 6LP sing 23 n y 
CAD NAC 6LP sing 24 n n 
CAB CAA 6LP sing 25 n n 
CAB NAC 6LP sing 26 n n 
C5 H1 6LP sing 27 n n 
C6 H2 6LP sing 28 n n 
CAU H3 6LP sing 29 n n 
CAS H4 6LP sing 30 n n 
CAR H5 6LP sing 31 n n 
CAQ H6 6LP sing 32 n n 
NAO H7 6LP sing 33 n n 
CAE H8 6LP sing 34 n n 
CAG H9 6LP sing 35 n n 
CAH H10 6LP sing 36 n n 
NAC H11 6LP sing 37 n n 
CAB H12 6LP sing 38 n n 
CAB H13 6LP sing 39 n n 
CAA H14 6LP sing 40 n n 
CAA H15 6LP sing 41 n n 
NAX H16 6LP sing 42 n n 
NAX H17 6LP sing 43 n n 
#
_atom_sites.entry_id                     5JMS 
_atom_sites.fract_transf_matrix[1][1]    0.02076 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.003147 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013746 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.015495 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 6LP A 1 601 1 6LP DRG . 
C 3 CA A 1 602 1 CA CA . 
D 4 EDO A 1 603 2 EDO EDO . 
E 4 EDO A 1 604 3 EDO EDO . 
F 5 HOH A 1 701 237 HOH HOH . 
F 5 HOH A 2 702 236 HOH HOH . 
F 5 HOH A 3 703 83 HOH HOH . 
F 5 HOH A 4 704 140 HOH HOH . 
F 5 HOH A 5 705 212 HOH HOH . 
F 5 HOH A 6 706 70 HOH HOH . 
F 5 HOH A 7 707 130 HOH HOH . 
F 5 HOH A 8 708 226 HOH HOH . 
F 5 HOH A 9 709 67 HOH HOH . 
F 5 HOH A 10 710 74 HOH HOH . 
F 5 HOH A 11 711 218 HOH HOH . 
F 5 HOH A 12 712 213 HOH HOH . 
F 5 HOH A 13 713 214 HOH HOH . 
F 5 HOH A 14 714 85 HOH HOH . 
F 5 HOH A 15 715 66 HOH HOH . 
F 5 HOH A 16 716 232 HOH HOH . 
F 5 HOH A 17 717 216 HOH HOH . 
F 5 HOH A 18 718 229 HOH HOH . 
F 5 HOH A 19 719 233 HOH HOH . 
F 5 HOH A 20 720 225 HOH HOH . 
F 5 HOH A 21 721 230 HOH HOH . 
F 5 HOH A 22 722 223 HOH HOH . 
F 5 HOH A 23 723 234 HOH HOH . 
F 5 HOH A 24 724 209 HOH HOH . 
F 5 HOH A 25 725 71 HOH HOH . 
F 5 HOH A 26 726 238 HOH HOH . 
F 5 HOH A 27 727 119 HOH HOH . 
F 5 HOH A 28 728 193 HOH HOH . 
F 5 HOH A 29 729 235 HOH HOH . 
F 5 HOH A 30 730 111 HOH HOH . 
F 5 HOH A 31 731 231 HOH HOH . 
F 5 HOH A 32 732 95 HOH HOH . 
F 5 HOH A 33 733 53 HOH HOH . 
F 5 HOH A 34 734 82 HOH HOH . 
F 5 HOH A 35 735 227 HOH HOH . 
F 5 HOH A 36 736 60 HOH HOH . 
F 5 HOH A 37 737 228 HOH HOH . 
F 5 HOH A 38 738 239 HOH HOH . 
F 5 HOH A 39 739 62 HOH HOH . 
F 5 HOH A 40 740 56 HOH HOH . 
F 5 HOH A 41 741 72 HOH HOH . 
F 5 HOH A 42 742 219 HOH HOH . 
F 5 HOH A 43 743 61 HOH HOH . 
F 5 HOH A 44 744 136 HOH HOH . 
F 5 HOH A 45 745 12 HOH HOH . 
F 5 HOH A 46 746 206 HOH HOH . 
F 5 HOH A 47 747 153 HOH HOH . 
F 5 HOH A 48 748 217 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C4 6LP . . . B 2 -7.935 -17.578 94.722 1 122.06 ? C4 6LP 601 A 1 
HETATM 2 C C5 6LP . . . B 2 -8.201 -18.924 94.449 1 121.92 ? C5 6LP 601 A 1 
HETATM 3 C C6 6LP . . . B 2 -7.127 -19.792 94.26 1 121.9 ? C6 6LP 601 A 1 
HETATM 4 N N1 6LP . . . B 2 -5.81 -19.286 94.319 1 122.54 ? N1 6LP 601 A 1 
HETATM 5 N N3 6LP . . . B 2 -6.655 -17.153 94.765 1 122.82 ? N3 6LP 601 A 1 
HETATM 6 C CAU 6LP . . . B 2 -3.302 -16.558 92.717 1 126.73 ? CAU 6LP 601 A 1 
HETATM 7 C CAT 6LP . . . B 2 -2.946 -15.431 91.966 1 127.39 ? CAT 6LP 601 A 1 
HETATM 8 CL CLAV 6LP . . . B 2 -2.07 -15.613 90.501 1 127.89 ? CLAV 6LP 601 A 1 
HETATM 9 C CAS 6LP . . . B 2 -3.298 -14.151 92.406 1 127.37 ? CAS 6LP 601 A 1 
HETATM 10 C CAR 6LP . . . B 2 -4.014 -13.993 93.597 1 126.99 ? CAR 6LP 601 A 1 
HETATM 11 C CAQ 6LP . . . B 2 -4.36 -15.117 94.351 1 126.57 ? CAQ 6LP 601 A 1 
HETATM 12 C CAP 6LP . . . B 2 -4.028 -16.408 93.903 1 126.07 ? CAP 6LP 601 A 1 
HETATM 13 N NAO 6LP . . . B 2 -4.352 -17.491 94.629 1 124.77 ? NAO 6LP 601 A 1 
HETATM 14 C C2 6LP . . . B 2 -5.603 -17.973 94.552 1 123.45 ? C2 6LP 601 A 1 
HETATM 15 C CAF 6LP . . . B 2 -8.962 -16.645 94.915 1 121.64 ? CAF 6LP 601 A 1 
HETATM 16 C CAE 6LP . . . B 2 -10.093 -16.931 95.696 1 121.4 ? CAE 6LP 601 A 1 
HETATM 17 C CAG 6LP . . . B 2 -8.814 -15.363 94.38 1 121.68 ? CAG 6LP 601 A 1 
HETATM 18 C CAH 6LP . . . B 2 -9.804 -14.407 94.585 1 121.7 ? CAH 6LP 601 A 1 
HETATM 19 N NAI 6LP . . . B 2 -10.949 -14.736 95.339 1 121.57 ? NAI 6LP 601 A 1 
HETATM 20 C CAD 6LP . . . B 2 -11.1 -15.969 95.865 1 121.22 ? CAD 6LP 601 A 1 
HETATM 21 N NAC 6LP . . . B 2 -12.181 -16.253 96.594 1 120.88 ? NAC 6LP 601 A 1 
HETATM 22 C CAB 6LP . . . B 2 -13.55 -16.211 96.053 1 120.8 ? CAB 6LP 601 A 1 
HETATM 23 C CAA 6LP . . . B 2 -14.319 -17.462 96.474 1 121.03 ? CAA 6LP 601 A 1 
HETATM 24 N NAX 6LP . . . B 2 -15.242 -17.886 95.412 1 121.09 ? NAX 6LP 601 A 1 
#
_model_server_stats.io_time_ms              19 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    8 
_model_server_stats.query_time_ms           320 
_model_server_stats.encode_time_ms          9 
_model_server_stats.element_count           24 
#