data_5JMS
#
_model_server_result.job_id            6gRt5JgL9hbCqxmNqZsV1w 
_model_server_result.datetime_utc      '2025-01-10 22:07:26' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5jms 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":602}' 
#
_entry.id    5JMS 
#
_exptl.entry_id    5JMS 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              40.078 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'CALCIUM ION' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          98.62 
_cell.angle_gamma         90 
_cell.entry_id            5JMS 
_cell.length_a            48.169 
_cell.length_b            72.75 
_cell.length_c            65.276 
_cell.Z_PDB               2 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5JMS 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OD1 ASP 469 A ASP 451 1_555 C CA CA . A CA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.137 ? 
metalc ? metalc2 A OD1 ASP 471 A ASP 453 1_555 C CA CA . A CA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.468 ? 
metalc ? metalc3 A OG SER 473 A SER 455 1_555 C CA CA . A CA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.342 ? 
metalc ? metalc4 A O LYS 475 A LYS 457 1_555 C CA CA . A CA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.583 ? 
metalc ? metalc5 C CA CA . A CA 602 1_555 E O1 EDO . A EDO 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.126 ? 
metalc ? metalc6 C CA CA . A CA 602 1_555 F O HOH . A HOH 731 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.828 ? 
#
_chem_comp.formula           'Ca 2' 
_chem_comp.formula_weight    40.078 
_chem_comp.id                CA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'CALCIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     5JMS 
_atom_sites.fract_transf_matrix[1][1]    0.02076 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.003147 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013746 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.015495 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 6LP A 1 601 1 6LP DRG . 
C 3 CA A 1 602 1 CA CA . 
D 4 EDO A 1 603 2 EDO EDO . 
E 4 EDO A 1 604 3 EDO EDO . 
F 5 HOH A 1 701 237 HOH HOH . 
F 5 HOH A 2 702 236 HOH HOH . 
F 5 HOH A 3 703 83 HOH HOH . 
F 5 HOH A 4 704 140 HOH HOH . 
F 5 HOH A 5 705 212 HOH HOH . 
F 5 HOH A 6 706 70 HOH HOH . 
F 5 HOH A 7 707 130 HOH HOH . 
F 5 HOH A 8 708 226 HOH HOH . 
F 5 HOH A 9 709 67 HOH HOH . 
F 5 HOH A 10 710 74 HOH HOH . 
F 5 HOH A 11 711 218 HOH HOH . 
F 5 HOH A 12 712 213 HOH HOH . 
F 5 HOH A 13 713 214 HOH HOH . 
F 5 HOH A 14 714 85 HOH HOH . 
F 5 HOH A 15 715 66 HOH HOH . 
F 5 HOH A 16 716 232 HOH HOH . 
F 5 HOH A 17 717 216 HOH HOH . 
F 5 HOH A 18 718 229 HOH HOH . 
F 5 HOH A 19 719 233 HOH HOH . 
F 5 HOH A 20 720 225 HOH HOH . 
F 5 HOH A 21 721 230 HOH HOH . 
F 5 HOH A 22 722 223 HOH HOH . 
F 5 HOH A 23 723 234 HOH HOH . 
F 5 HOH A 24 724 209 HOH HOH . 
F 5 HOH A 25 725 71 HOH HOH . 
F 5 HOH A 26 726 238 HOH HOH . 
F 5 HOH A 27 727 119 HOH HOH . 
F 5 HOH A 28 728 193 HOH HOH . 
F 5 HOH A 29 729 235 HOH HOH . 
F 5 HOH A 30 730 111 HOH HOH . 
F 5 HOH A 31 731 231 HOH HOH . 
F 5 HOH A 32 732 95 HOH HOH . 
F 5 HOH A 33 733 53 HOH HOH . 
F 5 HOH A 34 734 82 HOH HOH . 
F 5 HOH A 35 735 227 HOH HOH . 
F 5 HOH A 36 736 60 HOH HOH . 
F 5 HOH A 37 737 228 HOH HOH . 
F 5 HOH A 38 738 239 HOH HOH . 
F 5 HOH A 39 739 62 HOH HOH . 
F 5 HOH A 40 740 56 HOH HOH . 
F 5 HOH A 41 741 72 HOH HOH . 
F 5 HOH A 42 742 219 HOH HOH . 
F 5 HOH A 43 743 61 HOH HOH . 
F 5 HOH A 44 744 136 HOH HOH . 
F 5 HOH A 45 745 12 HOH HOH . 
F 5 HOH A 46 746 206 HOH HOH . 
F 5 HOH A 47 747 153 HOH HOH . 
F 5 HOH A 48 748 217 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           CA 
_atom_site.label_atom_id         CA 
_atom_site.label_comp_id         CA 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         C 
_atom_site.label_entity_id       3 
_atom_site.Cartn_x               12.946 
_atom_site.Cartn_y               -0.117 
_atom_site.Cartn_z               77.251 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        89.66 
_atom_site.pdbx_formal_charge    2 
_atom_site.auth_atom_id          CA 
_atom_site.auth_comp_id          CA 
_atom_site.auth_seq_id           602 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              20 
_model_server_stats.parse_time_ms           33 
_model_server_stats.create_model_time_ms    10 
_model_server_stats.query_time_ms           331 
_model_server_stats.encode_time_ms          7 
_model_server_stats.element_count           1 
#