data_5JMX # _model_server_result.job_id 5AnC_nwjsprYN-6lIphb0w _model_server_result.datetime_utc '2024-11-28 12:13:29' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5jmx # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":305}' # _entry.id 5JMX # _exptl.entry_id 5JMX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 93.09 _cell.angle_gamma 90 _cell.entry_id 5JMX _cell.length_a 53.25 _cell.length_b 61.24 _cell.length_c 69.05 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5JMX _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 F N N ? 5 G N N ? 5 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 86 A HIS 116 1_555 C ZN ZN . A ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? metalc ? metalc2 A ND1 HIS 88 A HIS 118 1_555 C ZN ZN . A ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? metalc ? metalc3 A OD2 ASP 90 A ASP 120 1_555 B ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.14 ? metalc ? metalc4 A NE2 HIS 149 A HIS 179 1_555 C ZN ZN . A ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.013 ? metalc ? metalc5 A SG CYS 168 A CYS 198 1_555 B ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.272 ? metalc ? metalc6 A NE2 HIS 210 A HIS 240 1_555 B ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.097 ? metalc ? metalc7 B ZN ZN . A ZN 301 1_555 E S13 DZ5 . A DZ5 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.377 ? metalc ? metalc8 B ZN ZN . A ZN 301 1_555 E O01 DZ5 . A DZ5 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.194 ? metalc ? metalc9 C ZN ZN . A ZN 302 1_555 E S13 DZ5 . A DZ5 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.302 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 149 n n C1 C2 GOL sing 150 n n C1 H11 GOL sing 151 n n C1 H12 GOL sing 152 n n O1 HO1 GOL sing 153 n n C2 O2 GOL sing 154 n n C2 C3 GOL sing 155 n n C2 H2 GOL sing 156 n n O2 HO2 GOL sing 157 n n C3 O3 GOL sing 158 n n C3 H31 GOL sing 159 n n C3 H32 GOL sing 160 n n O3 HO3 GOL sing 161 n n # _atom_sites.entry_id 5JMX _atom_sites.fract_transf_matrix[1][1] 0.018779 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001014 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016329 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014503 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN A 1 301 301 ZN ZN . C 2 ZN A 1 302 302 ZN ZN . D 3 SO4 A 1 303 304 SO4 SO4 . E 4 DZ5 A 1 304 1 DZ5 LIG . F 5 GOL A 1 305 1 GOL GOL . G 5 GOL A 1 306 2 GOL GOL . H 5 GOL A 1 307 3 GOL GOL . I 6 HOH A 1 401 226 HOH HOH . I 6 HOH A 2 402 99 HOH HOH . I 6 HOH A 3 403 171 HOH HOH . I 6 HOH A 4 404 176 HOH HOH . I 6 HOH A 5 405 55 HOH HOH . I 6 HOH A 6 406 204 HOH HOH . I 6 HOH A 7 407 86 HOH HOH . I 6 HOH A 8 408 89 HOH HOH . I 6 HOH A 9 409 187 HOH HOH . I 6 HOH A 10 410 235 HOH HOH . I 6 HOH A 11 411 114 HOH HOH . I 6 HOH A 12 412 166 HOH HOH . I 6 HOH A 13 413 16 HOH HOH . I 6 HOH A 14 414 228 HOH HOH . I 6 HOH A 15 415 25 HOH HOH . I 6 HOH A 16 416 147 HOH HOH . I 6 HOH A 17 417 83 HOH HOH . I 6 HOH A 18 418 58 HOH HOH . I 6 HOH A 19 419 8 HOH HOH . I 6 HOH A 20 420 179 HOH HOH . I 6 HOH A 21 421 44 HOH HOH . I 6 HOH A 22 422 57 HOH HOH . I 6 HOH A 23 423 18 HOH HOH . I 6 HOH A 24 424 76 HOH HOH . I 6 HOH A 25 425 22 HOH HOH . I 6 HOH A 26 426 45 HOH HOH . I 6 HOH A 27 427 39 HOH HOH . I 6 HOH A 28 428 30 HOH HOH . I 6 HOH A 29 429 20 HOH HOH . I 6 HOH A 30 430 107 HOH HOH . I 6 HOH A 31 431 218 HOH HOH . I 6 HOH A 32 432 14 HOH HOH . I 6 HOH A 33 433 151 HOH HOH . I 6 HOH A 34 434 142 HOH HOH . I 6 HOH A 35 435 87 HOH HOH . I 6 HOH A 36 436 10 HOH HOH . I 6 HOH A 37 437 49 HOH HOH . I 6 HOH A 38 438 56 HOH HOH . I 6 HOH A 39 439 2 HOH HOH . I 6 HOH A 40 440 28 HOH HOH . I 6 HOH A 41 441 198 HOH HOH . I 6 HOH A 42 442 29 HOH HOH . I 6 HOH A 43 443 117 HOH HOH . I 6 HOH A 44 444 17 HOH HOH . I 6 HOH A 45 445 112 HOH HOH . I 6 HOH A 46 446 21 HOH HOH . I 6 HOH A 47 447 137 HOH HOH . I 6 HOH A 48 448 26 HOH HOH . I 6 HOH A 49 449 90 HOH HOH . I 6 HOH A 50 450 80 HOH HOH . I 6 HOH A 51 451 100 HOH HOH . I 6 HOH A 52 452 7 HOH HOH . I 6 HOH A 53 453 31 HOH HOH . I 6 HOH A 54 454 3 HOH HOH . I 6 HOH A 55 455 81 HOH HOH . I 6 HOH A 56 456 68 HOH HOH . I 6 HOH A 57 457 4 HOH HOH . I 6 HOH A 58 458 12 HOH HOH . I 6 HOH A 59 459 94 HOH HOH . I 6 HOH A 60 460 105 HOH HOH . I 6 HOH A 61 461 200 HOH HOH . I 6 HOH A 62 462 62 HOH HOH . I 6 HOH A 63 463 23 HOH HOH . I 6 HOH A 64 464 27 HOH HOH . I 6 HOH A 65 465 123 HOH HOH . I 6 HOH A 66 466 185 HOH HOH . I 6 HOH A 67 467 33 HOH HOH . I 6 HOH A 68 468 34 HOH HOH . I 6 HOH A 69 469 48 HOH HOH . I 6 HOH A 70 470 19 HOH HOH . I 6 HOH A 71 471 36 HOH HOH . I 6 HOH A 72 472 170 HOH HOH . I 6 HOH A 73 473 1 HOH HOH . I 6 HOH A 74 474 113 HOH HOH . I 6 HOH A 75 475 5 HOH HOH . I 6 HOH A 76 476 37 HOH HOH . I 6 HOH A 77 477 47 HOH HOH . I 6 HOH A 78 478 130 HOH HOH . I 6 HOH A 79 479 236 HOH HOH . I 6 HOH A 80 480 74 HOH HOH . I 6 HOH A 81 481 54 HOH HOH . I 6 HOH A 82 482 163 HOH HOH . I 6 HOH A 83 483 35 HOH HOH . I 6 HOH A 84 484 92 HOH HOH . I 6 HOH A 85 485 11 HOH HOH . I 6 HOH A 86 486 106 HOH HOH . I 6 HOH A 87 487 158 HOH HOH . I 6 HOH A 88 488 75 HOH HOH . I 6 HOH A 89 489 133 HOH HOH . I 6 HOH A 90 490 53 HOH HOH . I 6 HOH A 91 491 59 HOH HOH . I 6 HOH A 92 492 65 HOH HOH . I 6 HOH A 93 493 46 HOH HOH . I 6 HOH A 94 494 167 HOH HOH . I 6 HOH A 95 495 213 HOH HOH . I 6 HOH A 96 496 215 HOH HOH . I 6 HOH A 97 497 120 HOH HOH . I 6 HOH A 98 498 24 HOH HOH . I 6 HOH A 99 499 51 HOH HOH . I 6 HOH A 100 500 9 HOH HOH . I 6 HOH A 101 501 132 HOH HOH . I 6 HOH A 102 502 157 HOH HOH . I 6 HOH A 103 503 164 HOH HOH . I 6 HOH A 104 504 186 HOH HOH . I 6 HOH A 105 505 95 HOH HOH . I 6 HOH A 106 506 78 HOH HOH . I 6 HOH A 107 507 73 HOH HOH . I 6 HOH A 108 508 63 HOH HOH . I 6 HOH A 109 509 134 HOH HOH . I 6 HOH A 110 510 183 HOH HOH . I 6 HOH A 111 511 42 HOH HOH . I 6 HOH A 112 512 61 HOH HOH . I 6 HOH A 113 513 60 HOH HOH . I 6 HOH A 114 514 6 HOH HOH . I 6 HOH A 115 515 193 HOH HOH . I 6 HOH A 116 516 153 HOH HOH . I 6 HOH A 117 517 43 HOH HOH . I 6 HOH A 118 518 38 HOH HOH . I 6 HOH A 119 519 172 HOH HOH . I 6 HOH A 120 520 190 HOH HOH . I 6 HOH A 121 521 118 HOH HOH . I 6 HOH A 122 522 209 HOH HOH . I 6 HOH A 123 523 97 HOH HOH . I 6 HOH A 124 524 194 HOH HOH . I 6 HOH A 125 525 41 HOH HOH . I 6 HOH A 126 526 71 HOH HOH . I 6 HOH A 127 527 138 HOH HOH . I 6 HOH A 128 528 168 HOH HOH . I 6 HOH A 129 529 238 HOH HOH . I 6 HOH A 130 530 101 HOH HOH . I 6 HOH A 131 531 214 HOH HOH . I 6 HOH A 132 532 102 HOH HOH . I 6 HOH A 133 533 222 HOH HOH . I 6 HOH A 134 534 79 HOH HOH . I 6 HOH A 135 535 72 HOH HOH . I 6 HOH A 136 536 109 HOH HOH . I 6 HOH A 137 537 66 HOH HOH . I 6 HOH A 138 538 127 HOH HOH . I 6 HOH A 139 539 82 HOH HOH . I 6 HOH A 140 540 135 HOH HOH . I 6 HOH A 141 541 210 HOH HOH . I 6 HOH A 142 542 131 HOH HOH . I 6 HOH A 143 543 181 HOH HOH . I 6 HOH A 144 544 229 HOH HOH . I 6 HOH A 145 545 154 HOH HOH . I 6 HOH A 146 546 128 HOH HOH . I 6 HOH A 147 547 221 HOH HOH . I 6 HOH A 148 548 148 HOH HOH . I 6 HOH A 149 549 125 HOH HOH . I 6 HOH A 150 550 121 HOH HOH . I 6 HOH A 151 551 239 HOH HOH . I 6 HOH A 152 552 140 HOH HOH . I 6 HOH A 153 553 224 HOH HOH . I 6 HOH A 154 554 152 HOH HOH . I 6 HOH A 155 555 230 HOH HOH . I 6 HOH A 156 556 32 HOH HOH . I 6 HOH A 157 557 115 HOH HOH . I 6 HOH A 158 558 40 HOH HOH . I 6 HOH A 159 559 110 HOH HOH . I 6 HOH A 160 560 227 HOH HOH . I 6 HOH A 161 561 150 HOH HOH . I 6 HOH A 162 562 180 HOH HOH . I 6 HOH A 163 563 103 HOH HOH . I 6 HOH A 164 564 88 HOH HOH . I 6 HOH A 165 565 67 HOH HOH . I 6 HOH A 166 566 197 HOH HOH . I 6 HOH A 167 567 237 HOH HOH . I 6 HOH A 168 568 124 HOH HOH . I 6 HOH A 169 569 219 HOH HOH . I 6 HOH A 170 570 223 HOH HOH . I 6 HOH A 171 571 52 HOH HOH . I 6 HOH A 172 572 122 HOH HOH . I 6 HOH A 173 573 173 HOH HOH . I 6 HOH A 174 574 15 HOH HOH . I 6 HOH A 175 575 141 HOH HOH . I 6 HOH A 176 576 232 HOH HOH . I 6 HOH A 177 577 126 HOH HOH . I 6 HOH A 178 578 225 HOH HOH . I 6 HOH A 179 579 64 HOH HOH . I 6 HOH A 180 580 234 HOH HOH . I 6 HOH A 181 581 184 HOH HOH . I 6 HOH A 182 582 174 HOH HOH . I 6 HOH A 183 583 91 HOH HOH . I 6 HOH A 184 584 93 HOH HOH . I 6 HOH A 185 585 178 HOH HOH . I 6 HOH A 186 586 139 HOH HOH . I 6 HOH A 187 587 69 HOH HOH . I 6 HOH A 188 588 217 HOH HOH . I 6 HOH A 189 589 96 HOH HOH . I 6 HOH A 190 590 145 HOH HOH . I 6 HOH A 191 591 144 HOH HOH . I 6 HOH A 192 592 233 HOH HOH . I 6 HOH A 193 593 155 HOH HOH . I 6 HOH A 194 594 85 HOH HOH . I 6 HOH A 195 595 111 HOH HOH . I 6 HOH A 196 596 231 HOH HOH . I 6 HOH A 197 597 116 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . F 5 72.961 1.596 15.506 1 51.58 ? C1 GOL 305 A 1 HETATM 2 O O1 GOL . . . F 5 73.744 2.705 15.119 1 65.25 ? O1 GOL 305 A 1 HETATM 3 C C2 GOL . . . F 5 73.656 0.296 15.117 1 65.95 ? C2 GOL 305 A 1 HETATM 4 O O2 GOL . . . F 5 73.375 -0.018 13.762 1 54.12 ? O2 GOL 305 A 1 HETATM 5 C C3 GOL . . . F 5 75.167 0.42 15.296 1 76.2 ? C3 GOL 305 A 1 HETATM 6 O O3 GOL . . . F 5 75.718 -0.843 15.634 1 43.13 ? O3 GOL 305 A 1 # _model_server_stats.io_time_ms 117 _model_server_stats.parse_time_ms 120 _model_server_stats.create_model_time_ms 20 _model_server_stats.query_time_ms 548 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 6 #