data_5JN2 # _model_server_result.job_id 1g-Zl6si50IobtbPaTNyCA _model_server_result.datetime_utc '2024-10-19 09:26:48' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5jn2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":601}' # _entry.id 5JN2 # _exptl.entry_id 5JN2 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 441.525 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-[(3-{4-amino-5-[3-(benzyloxy)phenyl]-7H-pyrrolo[2,3-d]pyrimidin-7-yl}cyclobutyl)methyl]acetamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 98.63 _cell.angle_gamma 90 _cell.entry_id 5JN2 _cell.length_a 48.142 _cell.length_b 72.473 _cell.length_c 65.101 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5JN2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 469 A ASP 451 1_555 C CA CA . A CA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.136 ? metalc ? metalc2 A OD1 ASP 471 A ASP 453 1_555 C CA CA . A CA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.492 ? metalc ? metalc3 A OG SER 473 A SER 455 1_555 C CA CA . A CA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.183 ? metalc ? metalc4 A O LYS 475 A LYS 457 1_555 C CA CA . A CA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.611 ? metalc ? metalc5 C CA CA . A CA 602 1_555 D O1 EDO . A EDO 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.553 ? # _chem_comp.formula 'C26 H27 N5 O2' _chem_comp.formula_weight 441.525 _chem_comp.id 6LO _chem_comp.mon_nstd_flag . _chem_comp.name N-[(3-{4-amino-5-[3-(benzyloxy)phenyl]-7H-pyrrolo[2,3-d]pyrimidin-7-yl}cyclobutyl)methyl]acetamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAD NAE 6LO sing 1 n n N3 C2 6LO doub 2 n y N3 C4 6LO sing 3 n y C2 N1 6LO sing 4 n y NAE C4 6LO sing 5 n y NAE CAF 6LO sing 6 n y C4 C5 6LO doub 7 n y CAT CAS 6LO doub 8 n y CAT CAU 6LO sing 9 n y N1 C6 6LO doub 10 n y CAF CAG 6LO doub 11 n y CAS CAR 6LO sing 12 n y C5 C6 6LO sing 13 n y C5 CAG 6LO sing 14 n y C6 NAX 6LO sing 15 n n CAU CAP 6LO doub 16 n y CAG CAH 6LO sing 17 n n CAM CAH 6LO doub 18 n y CAM CAL 6LO sing 19 n y OAN CAL 6LO sing 20 n n OAN CAO 6LO sing 21 n n CAR CAQ 6LO doub 22 n y CAP CAQ 6LO sing 23 n y CAP CAO 6LO sing 24 n n CAH CAI 6LO sing 25 n y CAL CAK 6LO doub 26 n y CAI CAJ 6LO doub 27 n y CAK CAJ 6LO sing 28 n y CAF H4 6LO sing 29 n n C2 H5 6LO sing 30 n n NAX H6 6LO sing 31 n n NAX H7 6LO sing 32 n n CAM H8 6LO sing 33 n n CAI H9 6LO sing 34 n n CAJ H10 6LO sing 35 n n CAK H11 6LO sing 36 n n CAO H12 6LO sing 37 n n CAO H13 6LO sing 38 n n CAQ H14 6LO sing 39 n n CAR H15 6LO sing 40 n n CAS H16 6LO sing 41 n n CAT H17 6LO sing 42 n n CAU H18 6LO sing 43 n n CAD C1 6LO sing 44 n n C1 C3 6LO sing 45 n n C3 C7 6LO sing 46 n n C7 CAD 6LO sing 47 n n C3 C8 6LO sing 48 n n C8 N2 6LO sing 49 n n N2 C10 6LO sing 50 n n C10 O1 6LO doub 51 n n C10 C12 6LO sing 52 n n CAD H1 6LO sing 53 n n C1 H2 6LO sing 54 n n C1 H3 6LO sing 55 n n C3 H19 6LO sing 56 n n C7 H20 6LO sing 57 n n C7 H21 6LO sing 58 n n C8 H22 6LO sing 59 n n C8 H23 6LO sing 60 n n N2 H24 6LO sing 61 n n C12 H25 6LO sing 62 n n C12 H26 6LO sing 63 n n C12 H27 6LO sing 64 n n # _atom_sites.entry_id 5JN2 _atom_sites.fract_transf_matrix[1][1] 0.020772 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003153 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013798 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015537 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 6LO A 1 601 1 6LO DRG . C 3 CA A 1 602 1 CA CA . D 4 EDO A 1 603 232 EDO EDO . E 5 HOH A 1 701 83 HOH HOH . E 5 HOH A 2 702 211 HOH HOH . E 5 HOH A 3 703 130 HOH HOH . E 5 HOH A 4 704 67 HOH HOH . E 5 HOH A 5 705 216 HOH HOH . E 5 HOH A 6 706 74 HOH HOH . E 5 HOH A 7 707 140 HOH HOH . E 5 HOH A 8 708 129 HOH HOH . E 5 HOH A 9 709 82 HOH HOH . E 5 HOH A 10 710 230 HOH HOH . E 5 HOH A 11 711 231 HOH HOH . E 5 HOH A 12 712 28 HOH HOH . E 5 HOH A 13 713 95 HOH HOH . E 5 HOH A 14 714 219 HOH HOH . E 5 HOH A 15 715 66 HOH HOH . E 5 HOH A 16 716 79 HOH HOH . E 5 HOH A 17 717 128 HOH HOH . E 5 HOH A 18 718 85 HOH HOH . E 5 HOH A 19 719 224 HOH HOH . E 5 HOH A 20 720 220 HOH HOH . E 5 HOH A 21 721 53 HOH HOH . E 5 HOH A 22 722 111 HOH HOH . E 5 HOH A 23 723 223 HOH HOH . E 5 HOH A 24 724 69 HOH HOH . E 5 HOH A 25 725 218 HOH HOH . E 5 HOH A 26 726 71 HOH HOH . E 5 HOH A 27 727 228 HOH HOH . E 5 HOH A 28 728 214 HOH HOH . E 5 HOH A 29 729 198 HOH HOH . E 5 HOH A 30 730 56 HOH HOH . E 5 HOH A 31 731 119 HOH HOH . E 5 HOH A 32 732 60 HOH HOH . E 5 HOH A 33 733 70 HOH HOH . E 5 HOH A 34 734 221 HOH HOH . E 5 HOH A 35 735 212 HOH HOH . E 5 HOH A 36 736 72 HOH HOH . E 5 HOH A 37 737 229 HOH HOH . E 5 HOH A 38 738 62 HOH HOH . E 5 HOH A 39 739 227 HOH HOH . E 5 HOH A 40 740 215 HOH HOH . E 5 HOH A 41 741 61 HOH HOH . E 5 HOH A 42 742 222 HOH HOH . E 5 HOH A 43 743 12 HOH HOH . E 5 HOH A 44 744 206 HOH HOH . E 5 HOH A 45 745 226 HOH HOH . E 5 HOH A 46 746 153 HOH HOH . E 5 HOH A 47 747 103 HOH HOH . E 5 HOH A 48 748 225 HOH HOH . E 5 HOH A 49 749 48 HOH HOH . E 5 HOH A 50 750 213 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C4 6LO . . . B 2 -6.425 -16.725 93.796 1 95.46 ? C4 6LO 601 A 1 HETATM 2 C C5 6LO . . . B 2 -7.451 -17.423 94.334 1 95.25 ? C5 6LO 601 A 1 HETATM 3 C C6 6LO . . . B 2 -7.307 -18.765 94.49 1 95.1 ? C6 6LO 601 A 1 HETATM 4 N N1 6LO . . . B 2 -6.183 -19.423 94.148 1 95.04 ? N1 6LO 601 A 1 HETATM 5 N N3 6LO . . . B 2 -5.276 -17.333 93.426 1 95.52 ? N3 6LO 601 A 1 HETATM 6 C CAD 6LO . . . B 2 -5.964 -14.317 93.19 1 95.3 ? CAD 6LO 601 A 1 HETATM 7 N NAE 6LO . . . B 2 -6.778 -15.444 93.714 1 95.37 ? NAE 6LO 601 A 1 HETATM 8 C CAF 6LO . . . B 2 -8.017 -15.324 94.168 1 95.35 ? CAF 6LO 601 A 1 HETATM 9 C C2 6LO . . . B 2 -5.108 -18.712 93.607 1 95.35 ? C2 6LO 601 A 1 HETATM 10 N NAX 6LO . . . B 2 -8.313 -19.461 94.992 1 94.95 ? NAX 6LO 601 A 1 HETATM 11 C CAG 6LO . . . B 2 -8.456 -16.532 94.5 1 95.13 ? CAG 6LO 601 A 1 HETATM 12 C CAH 6LO . . . B 2 -9.608 -16.667 95.178 1 95.18 ? CAH 6LO 601 A 1 HETATM 13 C CAM 6LO . . . B 2 -10.859 -16.397 94.595 1 95.28 ? CAM 6LO 601 A 1 HETATM 14 C CAI 6LO . . . B 2 -9.554 -16.908 96.558 1 95.44 ? CAI 6LO 601 A 1 HETATM 15 C CAJ 6LO . . . B 2 -10.721 -16.996 97.322 1 95.69 ? CAJ 6LO 601 A 1 HETATM 16 C CAK 6LO . . . B 2 -11.962 -16.765 96.72 1 95.73 ? CAK 6LO 601 A 1 HETATM 17 C CAL 6LO . . . B 2 -12.046 -16.467 95.348 1 95.76 ? CAL 6LO 601 A 1 HETATM 18 O OAN 6LO . . . B 2 -13.254 -16.261 94.715 1 96.42 ? OAN 6LO 601 A 1 HETATM 19 C CAO 6LO . . . B 2 -14.443 -16.128 95.536 1 96.81 ? CAO 6LO 601 A 1 HETATM 20 C CAP 6LO . . . B 2 -15.514 -16.912 95.067 1 97.1 ? CAP 6LO 601 A 1 HETATM 21 C CAQ 6LO . . . B 2 -16.825 -16.45 95.213 1 96.96 ? CAQ 6LO 601 A 1 HETATM 22 C CAR 6LO . . . B 2 -17.915 -17.211 94.775 1 96.94 ? CAR 6LO 601 A 1 HETATM 23 C CAS 6LO . . . B 2 -17.698 -18.465 94.195 1 97.28 ? CAS 6LO 601 A 1 HETATM 24 C CAT 6LO . . . B 2 -16.392 -18.947 94.051 1 97.57 ? CAT 6LO 601 A 1 HETATM 25 C CAU 6LO . . . B 2 -15.312 -18.173 94.494 1 97.36 ? CAU 6LO 601 A 1 # _model_server_stats.io_time_ms 73 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 65 _model_server_stats.query_time_ms 303 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 25 #