data_5JNF # _model_server_result.job_id dahGODAobYuV1a3T1LunHQ _model_server_result.datetime_utc '2025-01-10 18:42:11' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5jnf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":601}' # _entry.id 5JNF # _exptl.entry_id 5JNF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 46.025 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FORMIC ACID' _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5JNF _cell.length_a 161.311 _cell.length_b 161.311 _cell.length_c 139.88 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5JNF _symmetry.cell_setting ? _symmetry.Int_Tables_number 76 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 41' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 ? monomeric 1 author_defined_assembly 3 ? monomeric 1 author_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,E,F,G,H,J 1 1 B,I,K 2 1 C,L 3 1 D,M 4 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N ? 2 I N N # _chem_comp.formula 'C H2 O2' _chem_comp.formula_weight 46.025 _chem_comp.id FMT _chem_comp.mon_nstd_flag . _chem_comp.name 'FORMIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C O1 FMT doub 83 n n C O2 FMT sing 84 n n C H FMT sing 85 n n O2 HO2 FMT sing 86 n n # _atom_sites.entry_id 5JNF _atom_sites.fract_transf_matrix[1][1] 0.006199 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006199 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007149 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 FMT C 1 601 4 FMT FMT . F 2 FMT C 1 602 6 FMT FMT . G 2 FMT C 1 603 8 FMT FMT . H 2 FMT C 1 604 9 FMT FMT . I 2 FMT A 1 601 2 FMT FMT . J 3 HOH C 1 701 208 HOH HOH . J 3 HOH C 2 702 16 HOH HOH . J 3 HOH C 3 703 196 HOH HOH . J 3 HOH C 4 704 65 HOH HOH . J 3 HOH C 5 705 211 HOH HOH . J 3 HOH C 6 706 89 HOH HOH . J 3 HOH C 7 707 200 HOH HOH . J 3 HOH C 8 708 203 HOH HOH . J 3 HOH C 9 709 37 HOH HOH . J 3 HOH C 10 710 68 HOH HOH . J 3 HOH C 11 711 47 HOH HOH . J 3 HOH C 12 712 199 HOH HOH . J 3 HOH C 13 713 51 HOH HOH . J 3 HOH C 14 714 17 HOH HOH . J 3 HOH C 15 715 90 HOH HOH . J 3 HOH C 16 716 18 HOH HOH . J 3 HOH C 17 717 210 HOH HOH . J 3 HOH C 18 718 79 HOH HOH . J 3 HOH C 19 719 85 HOH HOH . J 3 HOH C 20 720 20 HOH HOH . J 3 HOH C 21 721 3 HOH HOH . J 3 HOH C 22 722 198 HOH HOH . J 3 HOH C 23 723 58 HOH HOH . J 3 HOH C 24 724 32 HOH HOH . J 3 HOH C 25 725 102 HOH HOH . J 3 HOH C 26 726 206 HOH HOH . J 3 HOH C 27 727 76 HOH HOH . J 3 HOH C 28 728 75 HOH HOH . J 3 HOH C 29 729 236 HOH HOH . J 3 HOH C 30 730 74 HOH HOH . J 3 HOH C 31 731 80 HOH HOH . J 3 HOH C 32 732 82 HOH HOH . J 3 HOH C 33 733 43 HOH HOH . J 3 HOH C 34 734 31 HOH HOH . J 3 HOH C 35 735 172 HOH HOH . J 3 HOH C 36 736 92 HOH HOH . J 3 HOH C 37 737 4 HOH HOH . J 3 HOH C 38 738 115 HOH HOH . J 3 HOH C 39 739 108 HOH HOH . J 3 HOH C 40 740 212 HOH HOH . J 3 HOH C 41 741 95 HOH HOH . J 3 HOH C 42 742 185 HOH HOH . J 3 HOH C 43 743 231 HOH HOH . J 3 HOH C 44 744 107 HOH HOH . J 3 HOH C 45 745 19 HOH HOH . J 3 HOH C 46 746 94 HOH HOH . J 3 HOH C 47 747 12 HOH HOH . J 3 HOH C 48 748 177 HOH HOH . J 3 HOH C 49 749 179 HOH HOH . J 3 HOH C 50 750 101 HOH HOH . J 3 HOH C 51 751 109 HOH HOH . J 3 HOH C 52 752 111 HOH HOH . J 3 HOH C 53 753 232 HOH HOH . J 3 HOH C 54 754 190 HOH HOH . J 3 HOH C 55 755 103 HOH HOH . J 3 HOH C 56 756 237 HOH HOH . J 3 HOH C 57 757 114 HOH HOH . J 3 HOH C 58 758 168 HOH HOH . J 3 HOH C 59 759 183 HOH HOH . J 3 HOH C 60 760 106 HOH HOH . J 3 HOH C 61 761 48 HOH HOH . J 3 HOH C 62 762 170 HOH HOH . J 3 HOH C 63 763 116 HOH HOH . J 3 HOH C 64 764 97 HOH HOH . J 3 HOH C 65 765 118 HOH HOH . J 3 HOH C 66 766 23 HOH HOH . J 3 HOH C 67 767 99 HOH HOH . J 3 HOH C 68 768 63 HOH HOH . J 3 HOH C 69 769 184 HOH HOH . J 3 HOH C 70 770 207 HOH HOH . J 3 HOH C 71 771 233 HOH HOH . J 3 HOH C 72 772 53 HOH HOH . J 3 HOH C 73 773 117 HOH HOH . J 3 HOH C 74 774 230 HOH HOH . J 3 HOH C 75 775 180 HOH HOH . J 3 HOH C 76 776 229 HOH HOH . J 3 HOH C 77 777 234 HOH HOH . J 3 HOH C 78 778 228 HOH HOH . J 3 HOH C 79 779 113 HOH HOH . J 3 HOH C 80 780 235 HOH HOH . J 3 HOH C 81 781 98 HOH HOH . J 3 HOH C 82 782 169 HOH HOH . J 3 HOH C 83 783 112 HOH HOH . K 3 HOH A 1 701 192 HOH HOH . K 3 HOH A 2 702 84 HOH HOH . K 3 HOH A 3 703 83 HOH HOH . K 3 HOH A 4 704 25 HOH HOH . K 3 HOH A 5 705 197 HOH HOH . K 3 HOH A 6 706 215 HOH HOH . K 3 HOH A 7 707 34 HOH HOH . K 3 HOH A 8 708 33 HOH HOH . K 3 HOH A 9 709 5 HOH HOH . K 3 HOH A 10 710 28 HOH HOH . K 3 HOH A 11 711 30 HOH HOH . K 3 HOH A 12 712 202 HOH HOH . K 3 HOH A 13 713 217 HOH HOH . K 3 HOH A 14 714 57 HOH HOH . K 3 HOH A 15 715 39 HOH HOH . K 3 HOH A 16 716 22 HOH HOH . K 3 HOH A 17 717 2 HOH HOH . K 3 HOH A 18 718 73 HOH HOH . K 3 HOH A 19 719 46 HOH HOH . K 3 HOH A 20 720 86 HOH HOH . K 3 HOH A 21 721 49 HOH HOH . K 3 HOH A 22 722 209 HOH HOH . K 3 HOH A 23 723 66 HOH HOH . K 3 HOH A 24 724 70 HOH HOH . K 3 HOH A 25 725 67 HOH HOH . K 3 HOH A 26 726 69 HOH HOH . K 3 HOH A 27 727 204 HOH HOH . K 3 HOH A 28 728 29 HOH HOH . K 3 HOH A 29 729 62 HOH HOH . K 3 HOH A 30 730 38 HOH HOH . K 3 HOH A 31 731 125 HOH HOH . K 3 HOH A 32 732 119 HOH HOH . K 3 HOH A 33 733 7 HOH HOH . K 3 HOH A 34 734 21 HOH HOH . K 3 HOH A 35 735 191 HOH HOH . K 3 HOH A 36 736 123 HOH HOH . K 3 HOH A 37 737 36 HOH HOH . K 3 HOH A 38 738 24 HOH HOH . K 3 HOH A 39 739 219 HOH HOH . K 3 HOH A 40 740 87 HOH HOH . K 3 HOH A 41 741 40 HOH HOH . K 3 HOH A 42 742 132 HOH HOH . K 3 HOH A 43 743 221 HOH HOH . K 3 HOH A 44 744 162 HOH HOH . K 3 HOH A 45 745 45 HOH HOH . K 3 HOH A 46 746 127 HOH HOH . K 3 HOH A 47 747 44 HOH HOH . K 3 HOH A 48 748 213 HOH HOH . K 3 HOH A 49 749 218 HOH HOH . K 3 HOH A 50 750 194 HOH HOH . K 3 HOH A 51 751 165 HOH HOH . K 3 HOH A 52 752 164 HOH HOH . K 3 HOH A 53 753 91 HOH HOH . K 3 HOH A 54 754 120 HOH HOH . K 3 HOH A 55 755 122 HOH HOH . K 3 HOH A 56 756 130 HOH HOH . K 3 HOH A 57 757 41 HOH HOH . K 3 HOH A 58 758 126 HOH HOH . K 3 HOH A 59 759 159 HOH HOH . K 3 HOH A 60 760 133 HOH HOH . K 3 HOH A 61 761 77 HOH HOH . K 3 HOH A 62 762 35 HOH HOH . K 3 HOH A 63 763 121 HOH HOH . K 3 HOH A 64 764 222 HOH HOH . K 3 HOH A 65 765 166 HOH HOH . K 3 HOH A 66 766 131 HOH HOH . K 3 HOH A 67 767 163 HOH HOH . K 3 HOH A 68 768 223 HOH HOH . K 3 HOH A 69 769 161 HOH HOH . K 3 HOH A 70 770 220 HOH HOH . K 3 HOH A 71 771 158 HOH HOH . K 3 HOH A 72 772 176 HOH HOH . K 3 HOH A 73 773 227 HOH HOH . L 3 HOH B 1 601 187 HOH HOH . L 3 HOH B 2 602 226 HOH HOH . L 3 HOH B 3 603 139 HOH HOH . L 3 HOH B 4 604 140 HOH HOH . L 3 HOH B 5 605 141 HOH HOH . L 3 HOH B 6 606 135 HOH HOH . L 3 HOH B 7 607 138 HOH HOH . L 3 HOH B 8 608 137 HOH HOH . L 3 HOH B 9 609 224 HOH HOH . L 3 HOH B 10 610 225 HOH HOH . M 3 HOH D 1 601 189 HOH HOH . M 3 HOH D 2 602 238 HOH HOH . M 3 HOH D 3 603 144 HOH HOH . M 3 HOH D 4 604 188 HOH HOH . M 3 HOH D 5 605 145 HOH HOH . M 3 HOH D 6 606 146 HOH HOH . M 3 HOH D 7 607 193 HOH HOH . M 3 HOH D 8 608 151 HOH HOH . M 3 HOH D 9 609 147 HOH HOH . M 3 HOH D 10 610 149 HOH HOH . M 3 HOH D 11 611 142 HOH HOH . M 3 HOH D 12 612 148 HOH HOH . M 3 HOH D 13 613 150 HOH HOH . M 3 HOH D 14 614 143 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C FMT . . . E 2 69.27 -26.229 -2.6 1 76.07 ? C FMT 601 C 1 HETATM 2 O O1 FMT . . . E 2 68.231 -25.867 -3.2 1 77.78 ? O1 FMT 601 C 1 HETATM 3 O O2 FMT . . . E 2 69.384 -26.063 -1.372 1 80.11 ? O2 FMT 601 C 1 HETATM 4 H H FMT . . . E 2 70.097 -26.696 -3.135 1 91.28 ? H FMT 601 C 1 HETATM 5 H HO2 FMT . . . E 2 68.744 -25.499 -0.892 1 96.14 ? HO2 FMT 601 C 1 # _model_server_stats.io_time_ms 23 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 33 _model_server_stats.query_time_ms 337 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 5 #