data_5JNN # _model_server_result.job_id 5uc6n2yPYEEbtsOHIpCD_A _model_server_result.datetime_utc '2024-12-02 09:11:21' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5jnn # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":800}' # _entry.id 5JNN # _exptl.entry_id 5JNN _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 282.332 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(3S,4E)-5-[(1R,5R,8S)-8-hydroxy-1,5-dimethyl-3-oxo-6-oxabicyclo[3.2.1]octan-8-yl]-3-methylpent-4-enoic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5JNN _cell.length_a 60.95 _cell.length_b 60.95 _cell.length_c 255.812 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5JNN _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C15 H22 O5' _chem_comp.formula_weight 282.332 _chem_comp.id 6LM _chem_comp.mon_nstd_flag . _chem_comp.name '(3S,4E)-5-[(1R,5R,8S)-8-hydroxy-1,5-dimethyl-3-oxo-6-oxabicyclo[3.2.1]octan-8-yl]-3-methylpent-4-enoic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O06 C04 6LM doub 1 n n O05 C04 6LM sing 2 n n C04 C03 6LM sing 3 n n C19 C10 6LM sing 4 n n C11 C10 6LM sing 5 n n C11 C12 6LM sing 6 n n C03 C02 6LM sing 7 n n C10 C17 6LM sing 8 n n C10 C09 6LM sing 9 n n C07 C02 6LM sing 10 n n C07 C08 6LM doub 11 e n O13 C12 6LM doub 12 n n C02 C01 6LM sing 13 n n C17 O16 6LM sing 14 n n C12 C14 6LM sing 15 n n C09 C08 6LM sing 16 n n C09 O20 6LM sing 17 n n C09 C15 6LM sing 18 n n C14 C15 6LM sing 19 n n O16 C15 6LM sing 20 n n C15 C18 6LM sing 21 n n C17 H1 6LM sing 22 n n C17 H2 6LM sing 23 n n C01 H3 6LM sing 24 n n C01 H4 6LM sing 25 n n C01 H5 6LM sing 26 n n C02 H6 6LM sing 27 n n C03 H7 6LM sing 28 n n C03 H8 6LM sing 29 n n O05 H9 6LM sing 30 n n C07 H10 6LM sing 31 n n C08 H11 6LM sing 32 n n C11 H12 6LM sing 33 n n C11 H13 6LM sing 34 n n C14 H14 6LM sing 35 n n C14 H15 6LM sing 36 n n C18 H16 6LM sing 37 n n C18 H17 6LM sing 38 n n C18 H18 6LM sing 39 n n C19 H19 6LM sing 40 n n C19 H20 6LM sing 41 n n C19 H21 6LM sing 42 n n O20 H22 6LM sing 43 n n # _atom_sites.entry_id 5JNN _atom_sites.fract_transf_matrix[1][1] 0.016407 _atom_sites.fract_transf_matrix[1][2] 0.009473 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018945 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003909 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 6LM A 1 800 800 6LM LIG . C 3 HOH A 1 901 43 HOH HOH . C 3 HOH A 2 902 52 HOH HOH . C 3 HOH A 3 903 49 HOH HOH . C 3 HOH A 4 904 7 HOH HOH . C 3 HOH A 5 905 34 HOH HOH . C 3 HOH A 6 906 46 HOH HOH . C 3 HOH A 7 907 40 HOH HOH . C 3 HOH A 8 908 4 HOH HOH . C 3 HOH A 9 909 18 HOH HOH . C 3 HOH A 10 910 3 HOH HOH . C 3 HOH A 11 911 16 HOH HOH . C 3 HOH A 12 912 27 HOH HOH . C 3 HOH A 13 913 5 HOH HOH . C 3 HOH A 14 914 51 HOH HOH . C 3 HOH A 15 915 14 HOH HOH . C 3 HOH A 16 916 30 HOH HOH . C 3 HOH A 17 917 2 HOH HOH . C 3 HOH A 18 918 36 HOH HOH . C 3 HOH A 19 919 13 HOH HOH . C 3 HOH A 20 920 28 HOH HOH . C 3 HOH A 21 921 41 HOH HOH . C 3 HOH A 22 922 31 HOH HOH . C 3 HOH A 23 923 19 HOH HOH . C 3 HOH A 24 924 20 HOH HOH . C 3 HOH A 25 925 17 HOH HOH . C 3 HOH A 26 926 47 HOH HOH . C 3 HOH A 27 927 42 HOH HOH . C 3 HOH A 28 928 33 HOH HOH . C 3 HOH A 29 929 1 HOH HOH . C 3 HOH A 30 930 45 HOH HOH . C 3 HOH A 31 931 21 HOH HOH . C 3 HOH A 32 932 8 HOH HOH . C 3 HOH A 33 933 10 HOH HOH . C 3 HOH A 34 934 15 HOH HOH . C 3 HOH A 35 935 29 HOH HOH . C 3 HOH A 36 936 39 HOH HOH . C 3 HOH A 37 937 23 HOH HOH . C 3 HOH A 38 938 11 HOH HOH . C 3 HOH A 39 939 22 HOH HOH . C 3 HOH A 40 940 6 HOH HOH . C 3 HOH A 41 941 12 HOH HOH . C 3 HOH A 42 942 9 HOH HOH . C 3 HOH A 43 943 35 HOH HOH . C 3 HOH A 44 944 44 HOH HOH . C 3 HOH A 45 945 25 HOH HOH . C 3 HOH A 46 946 37 HOH HOH . C 3 HOH A 47 947 32 HOH HOH . C 3 HOH A 48 948 26 HOH HOH . C 3 HOH A 49 949 48 HOH HOH . C 3 HOH A 50 950 50 HOH HOH . C 3 HOH A 51 951 24 HOH HOH . C 3 HOH A 52 952 38 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 6LM . . . B 2 -4.96 -33.842 12.382 1 105.66 ? C10 6LM 800 A 1 HETATM 2 C C15 6LM . . . B 2 -5.461 -33.689 14.692 1 108.61 ? C15 6LM 800 A 1 HETATM 3 C C17 6LM . . . B 2 -5.36 -35.198 13.005 1 111.03 ? C17 6LM 800 A 1 HETATM 4 C C01 6LM . . . B 2 -3.689 -29.002 14.128 1 52.86 ? C01 6LM 800 A 1 HETATM 5 C C02 6LM . . . B 2 -3.23 -29.65 12.869 1 49.39 ? C02 6LM 800 A 1 HETATM 6 C C03 6LM . . . B 2 -2.251 -28.986 12.178 1 49.23 ? C03 6LM 800 A 1 HETATM 7 C C04 6LM . . . B 2 -1.575 -29.516 10.962 1 53.04 ? C04 6LM 800 A 1 HETATM 8 O O05 6LM . . . B 2 -1.262 -30.737 10.856 1 66.35 ? O05 6LM 800 A 1 HETATM 9 O O06 6LM . . . B 2 -1.277 -28.713 10.045 1 46.06 -1 O06 6LM 800 A 1 HETATM 10 C C07 6LM . . . B 2 -3.423 -31.138 12.739 1 56.75 ? C07 6LM 800 A 1 HETATM 11 C C08 6LM . . . B 2 -4.285 -31.806 13.594 1 78.17 ? C08 6LM 800 A 1 HETATM 12 C C09 6LM . . . B 2 -4.533 -33.316 13.584 1 101.38 ? C09 6LM 800 A 1 HETATM 13 C C11 6LM . . . B 2 -6.254 -33.275 11.92 1 104.96 ? C11 6LM 800 A 1 HETATM 14 C C12 6LM . . . B 2 -7.205 -32.93 13.027 1 109.47 ? C12 6LM 800 A 1 HETATM 15 O O13 6LM . . . B 2 -8.226 -32.312 12.772 1 112.01 ? O13 6LM 800 A 1 HETATM 16 C C14 6LM . . . B 2 -6.901 -33.329 14.442 1 109.79 ? C14 6LM 800 A 1 HETATM 17 O O16 6LM . . . B 2 -5.414 -35.068 14.503 1 114.44 ? O16 6LM 800 A 1 HETATM 18 C C18 6LM . . . B 2 -5.063 -33.305 16.065 1 103.82 ? C18 6LM 800 A 1 HETATM 19 C C19 6LM . . . B 2 -3.966 -34.087 11.282 1 101.61 ? C19 6LM 800 A 1 HETATM 20 O O20 6LM . . . B 2 -3.328 -34.005 13.842 1 105.3 ? O20 6LM 800 A 1 # _model_server_stats.io_time_ms 66 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 275 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 20 #