data_5JNQ # _model_server_result.job_id ioWjZ1QpSYFzJDr79xYoGA _model_server_result.datetime_utc '2024-11-21 14:25:32' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5jnq # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 5JNQ # _exptl.entry_id 5JNQ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 816.889 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description Tunicamycin _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5JNQ _cell.length_a 92.64 _cell.length_b 105.54 _cell.length_c 134.96 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5JNQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F 1 1 A,B,C,D,E,F 1 2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_589 x,-y+3,-z+4 1 0 0 0 -1 0 0 0 -1 0 316.62 539.84 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C37 H60 N4 O16' _chem_comp.formula_weight 816.889 _chem_comp.id TUM _chem_comp.mon_nstd_flag . _chem_comp.name Tunicamycin _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O10 C9 TUM sing 431 n n O12 C11 TUM sing 432 n n C11 C9 TUM sing 433 n n C11 C13 TUM sing 434 n n C9 C8 TUM sing 435 n n O23 C22 TUM sing 436 n n C22 C20 TUM sing 437 n n C22 C17 TUM sing 438 n n O16 C15 TUM sing 439 n n C14 C13 TUM sing 440 n n C14 C15 TUM sing 441 n n C13 O32 TUM sing 442 n n C8 N7 TUM sing 443 n n C8 C33 TUM sing 444 n n C4 C5 TUM sing 445 n n N7 C5 TUM sing 446 n n C20 O21 TUM sing 447 n n C20 C19 TUM sing 448 n n C15 C17 TUM sing 449 n n C5 O6 TUM doub 450 n n C17 O18 TUM sing 451 n n O32 C33 TUM sing 452 n n C26 C25 TUM doub 453 n n C26 C27 TUM sing 454 n n C25 N24 TUM sing 455 n n C33 O34 TUM sing 456 n n C19 N24 TUM sing 457 n n C19 O18 TUM sing 458 n n N24 C30 TUM sing 459 n n C27 O28 TUM doub 460 n n C27 N29 TUM sing 461 n n O34 C35 TUM sing 462 n n N29 C30 TUM sing 463 n n C30 O31 TUM doub 464 n n C35 O36 TUM sing 465 n n C35 C44 TUM sing 466 n n O36 C37 TUM sing 467 n n C37 C38 TUM sing 468 n n C37 C40 TUM sing 469 n n O47 C46 TUM doub 470 n n N45 C44 TUM sing 471 n n N45 C46 TUM sing 472 n n C38 O39 TUM sing 473 n n C44 C42 TUM sing 474 n n C46 C48 TUM sing 475 n n C42 C40 TUM sing 476 n n C42 O43 TUM sing 477 n n C40 O41 TUM sing 478 n n C4 H1 TUM sing 479 n n C8 H4 TUM sing 480 n n C13 H5 TUM sing 481 n n C15 H6 TUM sing 482 n n C17 H7 TUM sing 483 n n C20 H8 TUM sing 484 n n C22 H9 TUM sing 485 n n C26 H10 TUM sing 486 n n N7 H11 TUM sing 487 n n C9 H12 TUM sing 488 n n O10 H13 TUM sing 489 n n C11 H14 TUM sing 490 n n O12 H15 TUM sing 491 n n C14 H16 TUM sing 492 n n C14 H17 TUM sing 493 n n O16 H18 TUM sing 494 n n C19 H19 TUM sing 495 n n O21 H20 TUM sing 496 n n O23 H21 TUM sing 497 n n C25 H22 TUM sing 498 n n N29 H23 TUM sing 499 n n C33 H24 TUM sing 500 n n C35 H25 TUM sing 501 n n C37 H26 TUM sing 502 n n C38 H27 TUM sing 503 n n C38 H28 TUM sing 504 n n O39 H29 TUM sing 505 n n C40 H30 TUM sing 506 n n O41 H31 TUM sing 507 n n C42 H32 TUM sing 508 n n O43 H33 TUM sing 509 n n C44 H34 TUM sing 510 n n N45 H35 TUM sing 511 n n C48 H36 TUM sing 512 n n C48 H37 TUM sing 513 n n C48 H38 TUM sing 514 n n C4 C1 TUM doub 515 n n C1 C2 TUM sing 516 n n C2 C3 TUM sing 517 n n C3 C6 TUM sing 518 n n C6 C7 TUM sing 519 n n C7 C10 TUM sing 520 n n C10 C12 TUM sing 521 n n C12 C16 TUM sing 522 n n C16 C18 TUM sing 523 n n C18 C21 TUM sing 524 n n C21 C23 TUM sing 525 n n C21 C24 TUM sing 526 n n C1 H2 TUM sing 527 n n C2 H3 TUM sing 528 n n C2 H39 TUM sing 529 n n C3 H40 TUM sing 530 n n C3 H41 TUM sing 531 n n C6 H42 TUM sing 532 n n C6 H43 TUM sing 533 n n C7 H44 TUM sing 534 n n C7 H45 TUM sing 535 n n C10 H46 TUM sing 536 n n C10 H47 TUM sing 537 n n C12 H48 TUM sing 538 n n C12 H49 TUM sing 539 n n C16 H50 TUM sing 540 n n C16 H51 TUM sing 541 n n C18 H52 TUM sing 542 n n C18 H53 TUM sing 543 n n C21 H54 TUM sing 544 n n C23 H55 TUM sing 545 n n C23 H56 TUM sing 546 n n C23 H57 TUM sing 547 n n C24 H58 TUM sing 548 n n C24 H59 TUM sing 549 n n C24 H60 TUM sing 550 n n # _atom_sites.entry_id 5JNQ _atom_sites.fract_transf_matrix[1][1] 0.010794 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009475 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00741 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 TUM A 1 401 1 TUM LIG . C 3 PLM A 1 402 1 PLM PLM . D 3 PLM A 1 403 2 PLM PLM . E 4 BOG A 1 404 1 BOG BOG . F 5 HOH A 1 501 1 HOH HOH . F 5 HOH A 2 502 2 HOH HOH . F 5 HOH A 3 503 3 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C4 TUM . . . B 2 155.22 134.734 260.309 1 74.82 ? C4 TUM 401 A 1 HETATM 2 C C5 TUM . . . B 2 154.074 135.538 260.754 1 74.45 ? C5 TUM 401 A 1 HETATM 3 C C8 TUM . . . B 2 153.052 137.684 260.075 1 71.69 ? C8 TUM 401 A 1 HETATM 4 C C13 TUM . . . B 2 152.062 140.402 259.997 1 71.02 ? C13 TUM 401 A 1 HETATM 5 C C15 TUM . . . B 2 151.317 142.746 260.58 1 69.32 ? C15 TUM 401 A 1 HETATM 6 C C17 TUM . . . B 2 150.066 143.578 260.845 1 70.08 ? C17 TUM 401 A 1 HETATM 7 C C20 TUM . . . B 2 148.975 145.641 260.336 1 71.78 ? C20 TUM 401 A 1 HETATM 8 C C22 TUM . . . B 2 149.568 144.422 259.683 1 71.58 ? C22 TUM 401 A 1 HETATM 9 C C26 TUM . . . B 2 152.839 147.621 261.04 1 67.09 ? C26 TUM 401 A 1 HETATM 10 O O6 TUM . . . B 2 153.18 135.058 261.436 1 75.38 ? O6 TUM 401 A 1 HETATM 11 N N7 TUM . . . B 2 154.191 136.834 260.319 1 73.28 ? N7 TUM 401 A 1 HETATM 12 C C9 TUM . . . B 2 153.339 138.577 258.881 1 71.59 ? C9 TUM 401 A 1 HETATM 13 O O10 TUM . . . B 2 153.392 137.75 257.734 1 72.95 ? O10 TUM 401 A 1 HETATM 14 C C11 TUM . . . B 2 152.324 139.695 258.671 1 71.28 ? C11 TUM 401 A 1 HETATM 15 O O12 TUM . . . B 2 151.115 139.167 258.131 1 72.04 ? O12 TUM 401 A 1 HETATM 16 C C14 TUM . . . B 2 150.967 141.444 259.889 1 70.27 ? C14 TUM 401 A 1 HETATM 17 O O16 TUM . . . B 2 152.264 143.455 259.791 1 68.68 ? O16 TUM 401 A 1 HETATM 18 O O18 TUM . . . B 2 150.282 144.459 261.952 1 69.45 ? O18 TUM 401 A 1 HETATM 19 C C19 TUM . . . B 2 149.693 145.735 261.666 1 70.29 ? C19 TUM 401 A 1 HETATM 20 O O21 TUM . . . B 2 147.581 145.444 260.569 1 72.89 ? O21 TUM 401 A 1 HETATM 21 O O23 TUM . . . B 2 148.58 143.731 258.931 1 72.94 ? O23 TUM 401 A 1 HETATM 22 N N24 TUM . . . B 2 150.657 146.836 261.711 1 69.4 ? N24 TUM 401 A 1 HETATM 23 C C25 TUM . . . B 2 151.877 146.697 261.082 1 68.21 ? C25 TUM 401 A 1 HETATM 24 C C27 TUM . . . B 2 152.561 148.888 261.741 1 66.32 ? C27 TUM 401 A 1 HETATM 25 O O28 TUM . . . B 2 153.406 149.771 261.745 1 64.21 ? O28 TUM 401 A 1 HETATM 26 N N29 TUM . . . B 2 151.326 148.976 262.353 1 67.35 ? N29 TUM 401 A 1 HETATM 27 C C30 TUM . . . B 2 150.341 148.008 262.385 1 67.99 ? C30 TUM 401 A 1 HETATM 28 O O31 TUM . . . B 2 149.289 148.208 262.978 1 67.03 ? O31 TUM 401 A 1 HETATM 29 O O32 TUM . . . B 2 151.673 139.435 260.973 1 70.79 ? O32 TUM 401 A 1 HETATM 30 C C33 TUM . . . B 2 152.752 138.548 261.287 1 70.52 ? C33 TUM 401 A 1 HETATM 31 O O34 TUM . . . B 2 152.333 137.703 262.35 1 70.47 ? O34 TUM 401 A 1 HETATM 32 C C35 TUM . . . B 2 152.964 138.012 263.595 1 71.6 ? C35 TUM 401 A 1 HETATM 33 O O36 TUM . . . B 2 153.092 139.414 263.898 1 72.76 ? O36 TUM 401 A 1 HETATM 34 C C37 TUM . . . B 2 151.851 140.081 264.196 1 73.26 ? C37 TUM 401 A 1 HETATM 35 C C38 TUM . . . B 2 152.144 141.549 264.385 1 72.08 ? C38 TUM 401 A 1 HETATM 36 O O39 TUM . . . B 2 153 141.72 265.501 1 70.68 ? O39 TUM 401 A 1 HETATM 37 C C40 TUM . . . B 2 151.131 139.451 265.377 1 73.17 ? C40 TUM 401 A 1 HETATM 38 O O41 TUM . . . B 2 149.844 140.031 265.541 1 73.81 ? O41 TUM 401 A 1 HETATM 39 C C42 TUM . . . B 2 150.937 137.978 265.114 1 72.16 ? C42 TUM 401 A 1 HETATM 40 O O43 TUM . . . B 2 150.435 137.399 266.307 1 72.1 ? O43 TUM 401 A 1 HETATM 41 C C44 TUM . . . B 2 152.228 137.28 264.716 1 72.07 ? C44 TUM 401 A 1 HETATM 42 N N45 TUM . . . B 2 151.911 135.923 264.351 1 72.58 ? N45 TUM 401 A 1 HETATM 43 C C46 TUM . . . B 2 152.536 134.831 264.898 1 73.31 ? C46 TUM 401 A 1 HETATM 44 O O47 TUM . . . B 2 153.386 134.169 264.327 1 74.19 ? O47 TUM 401 A 1 HETATM 45 C C48 TUM . . . B 2 152.032 134.475 266.262 1 73.43 ? C48 TUM 401 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 25 _model_server_stats.query_time_ms 309 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 45 #