data_5JO1 # _model_server_result.job_id tBnfjq2RrZ5p2IDWO3snEA _model_server_result.datetime_utc '2024-11-18 10:26:11' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5jo1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":602}' # _entry.id 5JO1 # _exptl.entry_id 5JO1 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 3 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5JO1 _cell.length_a 45.63 _cell.length_b 75.45 _cell.length_c 168.6 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5JO1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 72 B ASP 243 1_555 C MG MG . B MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.901 ? metalc ? metalc2 A OD2 ASP 72 B ASP 243 1_555 C MG MG . B MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.071 ? metalc ? metalc3 A OD1 ASP 72 B ASP 243 1_555 D MG MG . B MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.571 ? metalc ? metalc4 A O GLY 73 B GLY 244 1_555 D MG MG . B MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.244 ? metalc ? metalc5 A OD1 ASP 261 B ASP 432 1_555 C MG MG . B MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.329 ? metalc ? metalc6 A OD1 ASP 321 B ASP 492 1_555 C MG MG . B MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.927 ? metalc ? metalc7 A OD2 ASP 321 B ASP 492 1_555 C MG MG . B MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.076 ? metalc ? metalc8 C MG MG . B MG 601 1_555 F O HOH . B HOH 710 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.368 ? metalc ? metalc9 D MG MG . B MG 602 1_555 F O HOH . B HOH 706 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.149 ? metalc ? metalc10 D MG MG . B MG 602 1_555 F O HOH . B HOH 710 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5JO1 _atom_sites.fract_transf_matrix[1][1] 0.021915 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013254 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005931 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 MG B 1 601 507 MG MG . D 3 MG B 1 602 508 MG MG . E 4 6LM A 1 800 800 6LM LIG . F 5 HOH B 1 701 1 HOH HOH . F 5 HOH B 2 702 53 HOH HOH . F 5 HOH B 3 703 30 HOH HOH . F 5 HOH B 4 704 2 HOH HOH . F 5 HOH B 5 705 21 HOH HOH . F 5 HOH B 6 706 25 HOH HOH . F 5 HOH B 7 707 44 HOH HOH . F 5 HOH B 8 708 27 HOH HOH . F 5 HOH B 9 709 4 HOH HOH . F 5 HOH B 10 710 22 HOH HOH . F 5 HOH B 11 711 47 HOH HOH . F 5 HOH B 12 712 3 HOH HOH . F 5 HOH B 13 713 51 HOH HOH . F 5 HOH B 14 714 33 HOH HOH . F 5 HOH B 15 715 6 HOH HOH . F 5 HOH B 16 716 19 HOH HOH . F 5 HOH B 17 717 17 HOH HOH . F 5 HOH B 18 718 8 HOH HOH . F 5 HOH B 19 719 45 HOH HOH . F 5 HOH B 20 720 12 HOH HOH . F 5 HOH B 21 721 49 HOH HOH . F 5 HOH B 22 722 14 HOH HOH . F 5 HOH B 23 723 31 HOH HOH . F 5 HOH B 24 724 55 HOH HOH . F 5 HOH B 25 725 18 HOH HOH . F 5 HOH B 26 726 43 HOH HOH . G 5 HOH A 1 901 38 HOH HOH . G 5 HOH A 2 902 39 HOH HOH . G 5 HOH A 3 903 26 HOH HOH . G 5 HOH A 4 904 5 HOH HOH . G 5 HOH A 5 905 28 HOH HOH . G 5 HOH A 6 906 20 HOH HOH . G 5 HOH A 7 907 11 HOH HOH . G 5 HOH A 8 908 37 HOH HOH . G 5 HOH A 9 909 7 HOH HOH . G 5 HOH A 10 910 15 HOH HOH . G 5 HOH A 11 911 10 HOH HOH . G 5 HOH A 12 912 29 HOH HOH . G 5 HOH A 13 913 32 HOH HOH . G 5 HOH A 14 914 36 HOH HOH . G 5 HOH A 15 915 41 HOH HOH . G 5 HOH A 16 916 35 HOH HOH . G 5 HOH A 17 917 13 HOH HOH . G 5 HOH A 18 918 16 HOH HOH . G 5 HOH A 19 919 50 HOH HOH . G 5 HOH A 20 920 23 HOH HOH . G 5 HOH A 21 921 48 HOH HOH . G 5 HOH A 22 922 40 HOH HOH . G 5 HOH A 23 923 42 HOH HOH . G 5 HOH A 24 924 46 HOH HOH . G 5 HOH A 25 925 54 HOH HOH . G 5 HOH A 26 926 9 HOH HOH . G 5 HOH A 27 927 52 HOH HOH . G 5 HOH A 28 928 34 HOH HOH . G 5 HOH A 29 929 24 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 3 _atom_site.Cartn_x 17.896 _atom_site.Cartn_y -33.078 _atom_site.Cartn_z -27.932 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 40.39 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 602 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 241 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 1 #