data_5JO2 # _model_server_result.job_id uw24so3jd8wDhzXaix3Sbg _model_server_result.datetime_utc '2024-12-07 23:44:22' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5jo2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":800}' # _entry.id 5JO2 # _exptl.entry_id 5JO2 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 264.317 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2Z,4E)-5-[(1S)-1-hydroxy-2,6,6-trimethyl-4-oxocyclohex-2-en-1-yl]-3-methylpenta-2,4-dienoic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5JO2 _cell.length_a 45.33 _cell.length_b 75.31 _cell.length_c 169.2 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5JO2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 B OD1 ASP 72 B ASP 243 1_555 D MG MG . B MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.956 ? metalc ? metalc2 B OD2 ASP 72 B ASP 243 1_555 D MG MG . B MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.143 ? metalc ? metalc3 B OD1 ASP 72 B ASP 243 1_555 E MG MG . B MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.255 ? metalc ? metalc4 B O GLY 73 B GLY 244 1_555 E MG MG . B MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.743 ? metalc ? metalc5 B OD1 ASP 261 B ASP 432 1_555 D MG MG . B MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.553 ? metalc ? metalc6 B OD2 ASP 321 B ASP 492 1_555 D MG MG . B MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? metalc ? metalc7 D MG MG . B MG 601 1_555 G O HOH . B HOH 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.133 ? metalc ? metalc8 D MG MG . B MG 601 1_555 G O HOH . B HOH 706 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.134 ? metalc ? metalc9 E MG MG . B MG 602 1_555 G O HOH . B HOH 707 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.111 ? # _chem_comp.formula 'C15 H20 O4' _chem_comp.formula_weight 264.317 _chem_comp.id A8S _chem_comp.mon_nstd_flag . _chem_comp.name '(2Z,4E)-5-[(1S)-1-hydroxy-2,6,6-trimethyl-4-oxocyclohex-2-en-1-yl]-3-methylpenta-2,4-dienoic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms '(+)-abscisic acid;(2Z,4E)-5-[(1S)-1-hydroxy-2,6,6-trimethyl-4-oxo-2-cyclohexen-1-yl]-3-methyl-2,4-pentadienoic acid' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O11 C1 A8S sing 1 n n O12 C1 A8S doub 2 z n C1 C2 A8S sing 3 n n C2 C3 A8S doub 4 n n C2 H2 A8S sing 5 n n C3 C4 A8S sing 6 e n C3 C6 A8S sing 7 n n C4 C5 A8S doub 8 n n C4 H4 A8S sing 9 n n C5 C7 A8S sing 10 n n C5 H5 A8S sing 11 n n C6 H6 A8S sing 12 n n C6 H6A A8S sing 13 n n C6 H6B A8S sing 14 n n O7 C7 A8S sing 15 n n C7 C12 A8S sing 16 n n C7 C8 A8S sing 17 n n O7 HO7 A8S sing 18 n n C8 C13 A8S sing 19 n n C8 C9 A8S doub 20 n n C9 C10 A8S sing 21 n n C9 H9 A8S sing 22 n n C11 C10 A8S sing 23 n n C10 O10 A8S doub 24 n n C12 C11 A8S sing 25 n n C11 H11 A8S sing 26 n n C11 H11A A8S sing 27 n n C15 C12 A8S sing 28 n n C14 C12 A8S sing 29 n n O11 HO11 A8S sing 30 n n C13 H13 A8S sing 31 n n C13 H13A A8S sing 32 n n C14 H14 A8S sing 33 n n C14 H14A A8S sing 34 n n C14 H14B A8S sing 35 n n C15 H15 A8S sing 36 n n C15 H15A A8S sing 37 n n C15 H15B A8S sing 38 n n C13 H13B A8S sing 39 n n # _atom_sites.entry_id 5JO2 _atom_sites.fract_transf_matrix[1][1] 0.02206 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013278 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00591 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 A8S A 1 800 800 A8S A8S . D 4 MG B 1 601 998 MG MG . E 4 MG B 1 602 999 MG MG . F 5 HOH A 1 901 16 HOH HOH . F 5 HOH A 2 902 10 HOH HOH . F 5 HOH A 3 903 9 HOH HOH . F 5 HOH A 4 904 1 HOH HOH . F 5 HOH A 5 905 3 HOH HOH . F 5 HOH A 6 906 14 HOH HOH . F 5 HOH A 7 907 8 HOH HOH . F 5 HOH A 8 908 7 HOH HOH . G 5 HOH B 1 701 15 HOH HOH . G 5 HOH B 2 702 19 HOH HOH . G 5 HOH B 3 703 12 HOH HOH . G 5 HOH B 4 704 6 HOH HOH . G 5 HOH B 5 705 4 HOH HOH . G 5 HOH B 6 706 11 HOH HOH . G 5 HOH B 7 707 13 HOH HOH . G 5 HOH B 8 708 5 HOH HOH . G 5 HOH B 9 709 17 HOH HOH . G 5 HOH B 10 710 18 HOH HOH . G 5 HOH B 11 711 20 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 A8S . . . C 3 13.722 -53.829 -22.143 1 61.94 ? C1 A8S 800 A 1 HETATM 2 C C2 A8S . . . C 3 15.194 -53.653 -22.321 1 55.37 ? C2 A8S 800 A 1 HETATM 3 C C3 A8S . . . C 3 15.746 -53.573 -23.569 1 50.81 ? C3 A8S 800 A 1 HETATM 4 C C4 A8S . . . C 3 15.159 -52.64 -24.573 1 47.03 ? C4 A8S 800 A 1 HETATM 5 C C5 A8S . . . C 3 15.967 -52.005 -25.474 1 46.76 ? C5 A8S 800 A 1 HETATM 6 C C6 A8S . . . C 3 17.131 -54.082 -23.785 1 47.55 ? C6 A8S 800 A 1 HETATM 7 C C7 A8S . . . C 3 15.452 -50.857 -26.278 1 49.37 ? C7 A8S 800 A 1 HETATM 8 O O7 A8S . . . C 3 14.155 -50.586 -25.894 1 50.52 ? O7 A8S 800 A 1 HETATM 9 C C8 A8S . . . C 3 16.304 -49.646 -25.963 1 41.88 ? C8 A8S 800 A 1 HETATM 10 C C9 A8S . . . C 3 17.552 -49.416 -26.744 1 36.56 ? C9 A8S 800 A 1 HETATM 11 C C10 A8S . . . C 3 17.77 -50.243 -27.963 1 43.26 ? C10 A8S 800 A 1 HETATM 12 O O10 A8S . . . C 3 18.724 -50.01 -28.692 1 43.58 ? O10 A8S 800 A 1 HETATM 13 C C11 A8S . . . C 3 16.835 -51.357 -28.296 1 43.39 ? C11 A8S 800 A 1 HETATM 14 O O11 A8S . . . C 3 13.274 -54.893 -21.641 1 60.78 ? O11 A8S 800 A 1 HETATM 15 C C12 A8S . . . C 3 15.459 -51.207 -27.735 1 45.87 ? C12 A8S 800 A 1 HETATM 16 O O12 A8S . . . C 3 12.926 -52.916 -22.487 1 67.36 ? O12 A8S 800 A 1 HETATM 17 C C13 A8S . . . C 3 15.842 -48.638 -24.969 1 43.8 ? C13 A8S 800 A 1 HETATM 18 C C14 A8S . . . C 3 14.729 -52.493 -27.948 1 37.29 ? C14 A8S 800 A 1 HETATM 19 C C15 A8S . . . C 3 14.729 -50.152 -28.497 1 42.06 ? C15 A8S 800 A 1 # _model_server_stats.io_time_ms 26 _model_server_stats.parse_time_ms 20 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 272 _model_server_stats.encode_time_ms 12 _model_server_stats.element_count 19 #