data_5JO9 # _model_server_result.job_id R1f79Rc186UIolydfL_1og _model_server_result.datetime_utc '2025-07-30 23:57:43' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5jo9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":302}' # _entry.id 5JO9 # _exptl.entry_id 5JO9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 182.172 _entity.id 3 _entity.src_method man _entity.type non-polymer _entity.pdbx_description sorbitol _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5JO9 _cell.length_a 100.879 _cell.length_b 100.879 _cell.length_c 88.6 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5JO9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 180 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 62 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_885 -x+3,-y+3,z -1 0 0 0 -1 0 0 0 1 151.3185 262.09133 0 3 'crystal symmetry operation' 7_557 y,x,-z+8/3 -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 0 0 236.266667 4 'crystal symmetry operation' 10_887 -y+3,-x+3,-z+8/3 0.5 -0.866025 0 -0.866025 -0.5 0 0 0 -1 151.3185 262.09133 236.266667 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C6 H14 O6' _chem_comp.formula_weight 182.172 _chem_comp.id SOR _chem_comp.mon_nstd_flag . _chem_comp.name sorbitol _chem_comp.type d-saccharide _chem_comp.pdbx_synonyms D-sorbitol;D-glucitol # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 SOR sing 292 n n C1 O1 SOR sing 293 n n C1 H11 SOR sing 294 n n C1 H12 SOR sing 295 n n C2 C3 SOR sing 296 n n C2 O2 SOR sing 297 n n C2 H2 SOR sing 298 n n C3 C4 SOR sing 299 n n C3 O3 SOR sing 300 n n C3 H3 SOR sing 301 n n C4 C5 SOR sing 302 n n C4 O4 SOR sing 303 n n C4 H4 SOR sing 304 n n C5 C6 SOR sing 305 n n C5 O5 SOR sing 306 n n C5 H5 SOR sing 307 n n C6 O6 SOR sing 308 n n C6 H61 SOR sing 309 n n C6 H62 SOR sing 310 n n O1 HO1 SOR sing 311 n n O2 HO2 SOR sing 312 n n O3 HO3 SOR sing 313 n n O4 HO4 SOR sing 314 n n O5 HO5 SOR sing 315 n n O6 HO6 SOR sing 316 n n # _atom_sites.entry_id 5JO9 _atom_sites.fract_transf_matrix[1][1] 0.009913 _atom_sites.fract_transf_matrix[1][2] 0.005723 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011446 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011287 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PO4 A 1 301 1 PO4 PO4 . C 3 SOR A 1 302 1 SOR SOR . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 SOR . . . C 3 80.337 115.664 105.721 1 61.62 ? C1 SOR 302 A 1 HETATM 2 C C2 SOR . . . C 3 79.998 115.511 107.205 1 61.21 ? C2 SOR 302 A 1 HETATM 3 C C3 SOR . . . C 3 79.889 116.827 107.978 1 57.13 ? C3 SOR 302 A 1 HETATM 4 C C4 SOR . . . C 3 81.255 117.441 108.352 1 58.64 ? C4 SOR 302 A 1 HETATM 5 C C5 SOR . . . C 3 81.734 117.174 109.782 1 58.81 ? C5 SOR 302 A 1 HETATM 6 C C6 SOR . . . C 3 83.08 117.833 110.079 1 57.32 ? C6 SOR 302 A 1 HETATM 7 O O1 SOR . . . C 3 80.181 114.418 105.072 1 63.92 ? O1 SOR 302 A 1 HETATM 8 O O2 SOR . . . C 3 78.752 114.859 107.31 1 63.7 ? O2 SOR 302 A 1 HETATM 9 O O3 SOR . . . C 3 79.044 116.582 109.093 1 55.24 ? O3 SOR 302 A 1 HETATM 10 O O4 SOR . . . C 3 82.235 116.946 107.467 1 58.86 ? O4 SOR 302 A 1 HETATM 11 O O5 SOR . . . C 3 80.797 117.676 110.708 1 55.95 ? O5 SOR 302 A 1 HETATM 12 O O6 SOR . . . C 3 82.874 119.04 110.776 1 55.47 ? O6 SOR 302 A 1 HETATM 13 H H11 SOR . . . C 3 81.364 116.011 105.611 1 73.94 ? H11 SOR 302 A 1 HETATM 14 H H12 SOR . . . C 3 79.677 116.402 105.266 1 73.94 ? H12 SOR 302 A 1 HETATM 15 H H2 SOR . . . C 3 80.77 114.9 107.673 1 73.45 ? H2 SOR 302 A 1 HETATM 16 H H3 SOR . . . C 3 79.389 117.541 107.324 1 68.56 ? H3 SOR 302 A 1 HETATM 17 H H4 SOR . . . C 3 81.178 118.521 108.225 1 70.37 ? H4 SOR 302 A 1 HETATM 18 H H5 SOR . . . C 3 81.84 116.097 109.916 1 70.57 ? H5 SOR 302 A 1 HETATM 19 H H61 SOR . . . C 3 83.694 117.162 110.679 1 68.78 ? H61 SOR 302 A 1 HETATM 20 H H62 SOR . . . C 3 83.606 118.032 109.146 1 68.78 ? H62 SOR 302 A 1 HETATM 21 H HO1 SOR . . . C 3 79.892 113.745 105.723 1 76.7 ? HO1 SOR 302 A 1 HETATM 22 H HO2 SOR . . . C 3 78.14 115.407 107.845 1 76.44 ? HO2 SOR 302 A 1 HETATM 23 H HO3 SOR . . . C 3 79.5 116.857 109.915 1 66.29 ? HO3 SOR 302 A 1 HETATM 24 H HO4 SOR . . . C 3 82.973 116.557 107.981 1 70.63 ? HO4 SOR 302 A 1 HETATM 25 H HO5 SOR . . . C 3 81.238 118.316 111.305 1 67.14 ? HO5 SOR 302 A 1 HETATM 26 H HO6 SOR . . . C 3 83.384 119.025 111.613 1 66.56 ? HO6 SOR 302 A 1 # _model_server_stats.io_time_ms 130 _model_server_stats.parse_time_ms 19 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 370 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 26 #