data_5JOC # _model_server_result.job_id WrIsGpFaGlj-YKHEaAJg7A _model_server_result.datetime_utc '2024-11-29 02:07:21' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5joc # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":401}' # _entry.id 5JOC # _exptl.entry_id 5JOC _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 192.124 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CITRIC ACID' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5JOC _cell.length_a 207.208 _cell.length_b 207.208 _cell.length_c 45.635 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5JOC _symmetry.cell_setting ? _symmetry.Int_Tables_number 173 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 63' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,G 1 1 B,E,F,H 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 E N N ? 2 F N N # _chem_comp.formula 'C6 H8 O7' _chem_comp.formula_weight 192.124 _chem_comp.id CIT _chem_comp.mon_nstd_flag . _chem_comp.name 'CITRIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 CIT doub 70 n n C1 O2 CIT sing 71 n n C1 C2 CIT sing 72 n n O2 HO2 CIT sing 73 n n C2 C3 CIT sing 74 n n C2 H21 CIT sing 75 n n C2 H22 CIT sing 76 n n C3 O7 CIT sing 77 n n C3 C4 CIT sing 78 n n C3 C6 CIT sing 79 n n O7 HO7 CIT sing 80 n n C4 C5 CIT sing 81 n n C4 H41 CIT sing 82 n n C4 H42 CIT sing 83 n n C5 O3 CIT doub 84 n n C5 O4 CIT sing 85 n n O4 HO4 CIT sing 86 n n C6 O5 CIT doub 87 n n C6 O6 CIT sing 88 n n O6 HO6 CIT sing 89 n n # _atom_sites.entry_id 5JOC _atom_sites.fract_transf_matrix[1][1] 0.004826 _atom_sites.fract_transf_matrix[1][2] 0.002786 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005573 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.021913 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 CIT A 1 400 400 CIT CIT . D 2 CIT A 1 401 401 CIT CIT . E 2 CIT B 1 400 400 CIT CIT . F 2 CIT B 1 401 401 CIT CIT . G 3 HOH A 1 501 272 HOH HOH . G 3 HOH A 2 502 69 HOH HOH . G 3 HOH A 3 503 132 HOH HOH . G 3 HOH A 4 504 218 HOH HOH . G 3 HOH A 5 505 107 HOH HOH . G 3 HOH A 6 506 167 HOH HOH . G 3 HOH A 7 507 182 HOH HOH . G 3 HOH A 8 508 271 HOH HOH . G 3 HOH A 9 509 70 HOH HOH . G 3 HOH A 10 510 131 HOH HOH . G 3 HOH A 11 511 121 HOH HOH . G 3 HOH A 12 512 194 HOH HOH . G 3 HOH A 13 513 47 HOH HOH . G 3 HOH A 14 514 75 HOH HOH . G 3 HOH A 15 515 258 HOH HOH . G 3 HOH A 16 516 112 HOH HOH . G 3 HOH A 17 517 32 HOH HOH . G 3 HOH A 18 518 65 HOH HOH . G 3 HOH A 19 519 51 HOH HOH . G 3 HOH A 20 520 98 HOH HOH . G 3 HOH A 21 521 109 HOH HOH . G 3 HOH A 22 522 201 HOH HOH . G 3 HOH A 23 523 56 HOH HOH . G 3 HOH A 24 524 220 HOH HOH . G 3 HOH A 25 525 135 HOH HOH . G 3 HOH A 26 526 54 HOH HOH . G 3 HOH A 27 527 255 HOH HOH . G 3 HOH A 28 528 166 HOH HOH . G 3 HOH A 29 529 202 HOH HOH . G 3 HOH A 30 530 39 HOH HOH . G 3 HOH A 31 531 181 HOH HOH . G 3 HOH A 32 532 221 HOH HOH . G 3 HOH A 33 533 103 HOH HOH . G 3 HOH A 34 534 26 HOH HOH . G 3 HOH A 35 535 261 HOH HOH . G 3 HOH A 36 536 40 HOH HOH . G 3 HOH A 37 537 118 HOH HOH . G 3 HOH A 38 538 93 HOH HOH . G 3 HOH A 39 539 57 HOH HOH . G 3 HOH A 40 540 89 HOH HOH . G 3 HOH A 41 541 15 HOH HOH . G 3 HOH A 42 542 99 HOH HOH . G 3 HOH A 43 543 28 HOH HOH . G 3 HOH A 44 544 46 HOH HOH . G 3 HOH A 45 545 100 HOH HOH . G 3 HOH A 46 546 59 HOH HOH . G 3 HOH A 47 547 92 HOH HOH . G 3 HOH A 48 548 231 HOH HOH . G 3 HOH A 49 549 88 HOH HOH . G 3 HOH A 50 550 248 HOH HOH . G 3 HOH A 51 551 144 HOH HOH . G 3 HOH A 52 552 34 HOH HOH . G 3 HOH A 53 553 190 HOH HOH . G 3 HOH A 54 554 196 HOH HOH . G 3 HOH A 55 555 266 HOH HOH . G 3 HOH A 56 556 232 HOH HOH . G 3 HOH A 57 557 146 HOH HOH . G 3 HOH A 58 558 120 HOH HOH . G 3 HOH A 59 559 50 HOH HOH . G 3 HOH A 60 560 81 HOH HOH . G 3 HOH A 61 561 78 HOH HOH . G 3 HOH A 62 562 158 HOH HOH . G 3 HOH A 63 563 73 HOH HOH . G 3 HOH A 64 564 235 HOH HOH . G 3 HOH A 65 565 7 HOH HOH . G 3 HOH A 66 566 36 HOH HOH . G 3 HOH A 67 567 6 HOH HOH . G 3 HOH A 68 568 262 HOH HOH . G 3 HOH A 69 569 148 HOH HOH . G 3 HOH A 70 570 159 HOH HOH . G 3 HOH A 71 571 49 HOH HOH . G 3 HOH A 72 572 152 HOH HOH . G 3 HOH A 73 573 24 HOH HOH . G 3 HOH A 74 574 102 HOH HOH . G 3 HOH A 75 575 195 HOH HOH . G 3 HOH A 76 576 19 HOH HOH . G 3 HOH A 77 577 115 HOH HOH . G 3 HOH A 78 578 216 HOH HOH . G 3 HOH A 79 579 13 HOH HOH . G 3 HOH A 80 580 16 HOH HOH . G 3 HOH A 81 581 10 HOH HOH . G 3 HOH A 82 582 244 HOH HOH . G 3 HOH A 83 583 170 HOH HOH . G 3 HOH A 84 584 275 HOH HOH . G 3 HOH A 85 585 80 HOH HOH . G 3 HOH A 86 586 199 HOH HOH . G 3 HOH A 87 587 122 HOH HOH . G 3 HOH A 88 588 129 HOH HOH . G 3 HOH A 89 589 58 HOH HOH . G 3 HOH A 90 590 84 HOH HOH . G 3 HOH A 91 591 3 HOH HOH . G 3 HOH A 92 592 210 HOH HOH . G 3 HOH A 93 593 52 HOH HOH . G 3 HOH A 94 594 214 HOH HOH . G 3 HOH A 95 595 108 HOH HOH . G 3 HOH A 96 596 185 HOH HOH . G 3 HOH A 97 597 157 HOH HOH . G 3 HOH A 98 598 27 HOH HOH . G 3 HOH A 99 599 125 HOH HOH . G 3 HOH A 100 600 77 HOH HOH . G 3 HOH A 101 601 191 HOH HOH . G 3 HOH A 102 602 8 HOH HOH . G 3 HOH A 103 603 156 HOH HOH . G 3 HOH A 104 604 175 HOH HOH . G 3 HOH A 105 605 64 HOH HOH . G 3 HOH A 106 606 240 HOH HOH . G 3 HOH A 107 607 21 HOH HOH . G 3 HOH A 108 608 105 HOH HOH . G 3 HOH A 109 609 97 HOH HOH . G 3 HOH A 110 610 60 HOH HOH . G 3 HOH A 111 611 168 HOH HOH . G 3 HOH A 112 612 83 HOH HOH . G 3 HOH A 113 613 259 HOH HOH . G 3 HOH A 114 614 205 HOH HOH . G 3 HOH A 115 615 113 HOH HOH . G 3 HOH A 116 616 219 HOH HOH . G 3 HOH A 117 617 35 HOH HOH . G 3 HOH A 118 618 176 HOH HOH . G 3 HOH A 119 619 114 HOH HOH . G 3 HOH A 120 620 128 HOH HOH . G 3 HOH A 121 621 233 HOH HOH . G 3 HOH A 122 622 143 HOH HOH . G 3 HOH A 123 623 20 HOH HOH . G 3 HOH A 124 624 274 HOH HOH . G 3 HOH A 125 625 44 HOH HOH . G 3 HOH A 126 626 147 HOH HOH . G 3 HOH A 127 627 273 HOH HOH . G 3 HOH A 128 628 71 HOH HOH . G 3 HOH A 129 629 138 HOH HOH . G 3 HOH A 130 630 198 HOH HOH . G 3 HOH A 131 631 72 HOH HOH . G 3 HOH A 132 632 209 HOH HOH . G 3 HOH A 133 633 224 HOH HOH . G 3 HOH A 134 634 227 HOH HOH . H 3 HOH B 1 501 90 HOH HOH . H 3 HOH B 2 502 153 HOH HOH . H 3 HOH B 3 503 215 HOH HOH . H 3 HOH B 4 504 94 HOH HOH . H 3 HOH B 5 505 269 HOH HOH . H 3 HOH B 6 506 133 HOH HOH . H 3 HOH B 7 507 206 HOH HOH . H 3 HOH B 8 508 14 HOH HOH . H 3 HOH B 9 509 178 HOH HOH . H 3 HOH B 10 510 101 HOH HOH . H 3 HOH B 11 511 223 HOH HOH . H 3 HOH B 12 512 257 HOH HOH . H 3 HOH B 13 513 38 HOH HOH . H 3 HOH B 14 514 197 HOH HOH . H 3 HOH B 15 515 222 HOH HOH . H 3 HOH B 16 516 127 HOH HOH . H 3 HOH B 17 517 268 HOH HOH . H 3 HOH B 18 518 186 HOH HOH . H 3 HOH B 19 519 243 HOH HOH . H 3 HOH B 20 520 177 HOH HOH . H 3 HOH B 21 521 184 HOH HOH . H 3 HOH B 22 522 9 HOH HOH . H 3 HOH B 23 523 4 HOH HOH . H 3 HOH B 24 524 55 HOH HOH . H 3 HOH B 25 525 254 HOH HOH . H 3 HOH B 26 526 48 HOH HOH . H 3 HOH B 27 527 12 HOH HOH . H 3 HOH B 28 528 179 HOH HOH . H 3 HOH B 29 529 126 HOH HOH . H 3 HOH B 30 530 74 HOH HOH . H 3 HOH B 31 531 117 HOH HOH . H 3 HOH B 32 532 62 HOH HOH . H 3 HOH B 33 533 96 HOH HOH . H 3 HOH B 34 534 165 HOH HOH . H 3 HOH B 35 535 163 HOH HOH . H 3 HOH B 36 536 150 HOH HOH . H 3 HOH B 37 537 171 HOH HOH . H 3 HOH B 38 538 85 HOH HOH . H 3 HOH B 39 539 134 HOH HOH . H 3 HOH B 40 540 180 HOH HOH . H 3 HOH B 41 541 161 HOH HOH . H 3 HOH B 42 542 256 HOH HOH . H 3 HOH B 43 543 145 HOH HOH . H 3 HOH B 44 544 29 HOH HOH . H 3 HOH B 45 545 91 HOH HOH . H 3 HOH B 46 546 79 HOH HOH . H 3 HOH B 47 547 236 HOH HOH . H 3 HOH B 48 548 63 HOH HOH . H 3 HOH B 49 549 142 HOH HOH . H 3 HOH B 50 550 155 HOH HOH . H 3 HOH B 51 551 212 HOH HOH . H 3 HOH B 52 552 124 HOH HOH . H 3 HOH B 53 553 42 HOH HOH . H 3 HOH B 54 554 189 HOH HOH . H 3 HOH B 55 555 76 HOH HOH . H 3 HOH B 56 556 104 HOH HOH . H 3 HOH B 57 557 25 HOH HOH . H 3 HOH B 58 558 200 HOH HOH . H 3 HOH B 59 559 5 HOH HOH . H 3 HOH B 60 560 18 HOH HOH . H 3 HOH B 61 561 33 HOH HOH . H 3 HOH B 62 562 237 HOH HOH . H 3 HOH B 63 563 119 HOH HOH . H 3 HOH B 64 564 61 HOH HOH . H 3 HOH B 65 565 45 HOH HOH . H 3 HOH B 66 566 43 HOH HOH . H 3 HOH B 67 567 151 HOH HOH . H 3 HOH B 68 568 164 HOH HOH . H 3 HOH B 69 569 141 HOH HOH . H 3 HOH B 70 570 169 HOH HOH . H 3 HOH B 71 571 111 HOH HOH . H 3 HOH B 72 572 246 HOH HOH . H 3 HOH B 73 573 239 HOH HOH . H 3 HOH B 74 574 149 HOH HOH . H 3 HOH B 75 575 37 HOH HOH . H 3 HOH B 76 576 154 HOH HOH . H 3 HOH B 77 577 82 HOH HOH . H 3 HOH B 78 578 140 HOH HOH . H 3 HOH B 79 579 11 HOH HOH . H 3 HOH B 80 580 208 HOH HOH . H 3 HOH B 81 581 41 HOH HOH . H 3 HOH B 82 582 23 HOH HOH . H 3 HOH B 83 583 245 HOH HOH . H 3 HOH B 84 584 192 HOH HOH . H 3 HOH B 85 585 87 HOH HOH . H 3 HOH B 86 586 193 HOH HOH . H 3 HOH B 87 587 173 HOH HOH . H 3 HOH B 88 588 253 HOH HOH . H 3 HOH B 89 589 123 HOH HOH . H 3 HOH B 90 590 136 HOH HOH . H 3 HOH B 91 591 17 HOH HOH . H 3 HOH B 92 592 174 HOH HOH . H 3 HOH B 93 593 217 HOH HOH . H 3 HOH B 94 594 265 HOH HOH . H 3 HOH B 95 595 95 HOH HOH . H 3 HOH B 96 596 249 HOH HOH . H 3 HOH B 97 597 247 HOH HOH . H 3 HOH B 98 598 31 HOH HOH . H 3 HOH B 99 599 67 HOH HOH . H 3 HOH B 100 600 22 HOH HOH . H 3 HOH B 101 601 30 HOH HOH . H 3 HOH B 102 602 234 HOH HOH . H 3 HOH B 103 603 106 HOH HOH . H 3 HOH B 104 604 137 HOH HOH . H 3 HOH B 105 605 242 HOH HOH . H 3 HOH B 106 606 229 HOH HOH . H 3 HOH B 107 607 263 HOH HOH . H 3 HOH B 108 608 251 HOH HOH . H 3 HOH B 109 609 162 HOH HOH . H 3 HOH B 110 610 172 HOH HOH . H 3 HOH B 111 611 110 HOH HOH . H 3 HOH B 112 612 264 HOH HOH . H 3 HOH B 113 613 86 HOH HOH . H 3 HOH B 114 614 252 HOH HOH . H 3 HOH B 115 615 66 HOH HOH . H 3 HOH B 116 616 160 HOH HOH . H 3 HOH B 117 617 68 HOH HOH . H 3 HOH B 118 618 187 HOH HOH . H 3 HOH B 119 619 267 HOH HOH . H 3 HOH B 120 620 250 HOH HOH . H 3 HOH B 121 621 238 HOH HOH . H 3 HOH B 122 622 53 HOH HOH . H 3 HOH B 123 623 241 HOH HOH . H 3 HOH B 124 624 270 HOH HOH . H 3 HOH B 125 625 225 HOH HOH . H 3 HOH B 126 626 204 HOH HOH . H 3 HOH B 127 627 211 HOH HOH . H 3 HOH B 128 628 203 HOH HOH . H 3 HOH B 129 629 228 HOH HOH . H 3 HOH B 130 630 260 HOH HOH . H 3 HOH B 131 631 130 HOH HOH . H 3 HOH B 132 632 213 HOH HOH . H 3 HOH B 133 633 226 HOH HOH . H 3 HOH B 134 634 207 HOH HOH . H 3 HOH B 135 635 230 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 CIT . . . F 2 17.337 96.014 -2.222 1 35.34 ? C1 CIT 401 B 1 HETATM 2 O O1 CIT . . . F 2 16.276 96.664 -2.562 1 28.15 ? O1 CIT 401 B 1 HETATM 3 O O2 CIT . . . F 2 17.408 94.755 -2.033 1 27.19 ? O2 CIT 401 B 1 HETATM 4 C C2 CIT . . . F 2 18.561 96.912 -2.085 1 35.66 ? C2 CIT 401 B 1 HETATM 5 C C3 CIT . . . F 2 18.675 97.78 -3.351 1 47.33 ? C3 CIT 401 B 1 HETATM 6 O O7 CIT . . . F 2 20.009 98.342 -3.284 1 51.45 ? O7 CIT 401 B 1 HETATM 7 C C4 CIT . . . F 2 18.659 96.825 -4.563 1 44.76 ? C4 CIT 401 B 1 HETATM 8 C C5 CIT . . . F 2 19.931 95.953 -4.368 1 59.05 ? C5 CIT 401 B 1 HETATM 9 O O3 CIT . . . F 2 20.034 94.697 -4.631 1 47.64 ? O3 CIT 401 B 1 HETATM 10 O O4 CIT . . . F 2 20.936 96.563 -3.893 1 73.61 ? O4 CIT 401 B 1 HETATM 11 C C6 CIT . . . F 2 17.675 98.99 -3.327 1 51.76 ? C6 CIT 401 B 1 HETATM 12 O O5 CIT . . . F 2 16.569 99.05 -3.918 1 49.83 ? O5 CIT 401 B 1 HETATM 13 O O6 CIT . . . F 2 17.95 99.998 -2.632 1 51.14 ? O6 CIT 401 B 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 346 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 13 #