data_5JOG # _model_server_result.job_id 7e9UeiWUA4yOFbQ-ArFFcg _model_server_result.datetime_utc '2025-02-05 07:49:12' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5jog # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":302}' # _entry.id 5JOG # _exptl.entry_id 5JOG _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 505.559 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "3-(difluoromethyl)-N-{6-[(5S,6S)-6-hydroxy-6,7,8,9-tetrahydro-5H-imidazo[1,5-a]azepin-5-yl][1,1'-biphenyl]-3-yl}-1-(propan-2-yl)-1H-pyrazole-5-carboxamide" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5JOG _cell.length_a 101.363 _cell.length_b 101.363 _cell.length_c 68.602 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5JOG _symmetry.cell_setting ? _symmetry.Int_Tables_number 79 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 4' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 138 A HIS 138 1_555 B ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.196 ? metalc ? metalc2 A NE2 HIS 140 A HIS 140 1_555 B ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? metalc ? metalc3 A OD2 ASP 151 A ASP 151 1_555 B ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.918 ? metalc ? metalc4 B ZN ZN . A ZN 301 1_555 C N4 6LT . A 6LT 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.932 ? # _chem_comp.formula 'C28 H29 F2 N5 O2' _chem_comp.formula_weight 505.559 _chem_comp.id 6LT _chem_comp.mon_nstd_flag . _chem_comp.name "3-(difluoromethyl)-N-{6-[(5S,6S)-6-hydroxy-6,7,8,9-tetrahydro-5H-imidazo[1,5-a]azepin-5-yl][1,1'-biphenyl]-3-yl}-1-(propan-2-yl)-1H-pyrazole-5-carboxamide" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag F36 C33 6LT sing 1 n n C33 F37 6LT sing 2 n n C33 C29 6LT sing 3 n n N30 C29 6LT doub 4 n y N30 N31 6LT sing 5 n y C29 C28 6LT sing 6 n y C34 C32 6LT sing 7 n n C35 C32 6LT sing 8 n n N31 C32 6LT sing 9 n n N31 C26 6LT sing 10 n y C28 C26 6LT doub 11 n y C26 C25 6LT sing 12 n n C25 O27 6LT doub 13 n n C25 N13 6LT sing 14 n n N13 C10 6LT sing 15 n n C10 C11 6LT doub 16 n y C10 C9 6LT sing 17 n y C11 C12 6LT sing 18 n y C9 C8 6LT doub 19 n y C12 C14 6LT sing 20 n n C12 C7 6LT doub 21 n y C8 C7 6LT sing 22 n y C24 C14 6LT doub 23 n y C24 C23 6LT sing 24 n y C14 C20 6LT sing 25 n y C23 C22 6LT doub 26 n y C7 C6 6LT sing 27 n n C20 C21 6LT doub 28 n y C22 C21 6LT sing 29 n y C6 C18 6LT sing 30 n n C6 N2 6LT sing 31 n n C3 N2 6LT sing 32 n y C3 N4 6LT doub 33 n y C18 O19 6LT sing 34 n n C18 C17 6LT sing 35 n n N2 C1 6LT sing 36 n y N4 C5 6LT sing 37 n y C17 C16 6LT sing 38 n n C1 C5 6LT doub 39 n y C1 C15 6LT sing 40 n n C15 C16 6LT sing 41 n n C3 H1 6LT sing 42 n n C11 H2 6LT sing 43 n n C15 H3 6LT sing 44 n n C15 H4 6LT sing 45 n n C16 H5 6LT sing 46 n n C16 H6 6LT sing 47 n n C17 H7 6LT sing 48 n n C17 H8 6LT sing 49 n n C18 H9 6LT sing 50 n n C20 H10 6LT sing 51 n n C21 H11 6LT sing 52 n n C22 H12 6LT sing 53 n n C23 H13 6LT sing 54 n n C24 H14 6LT sing 55 n n C28 H15 6LT sing 56 n n C5 H16 6LT sing 57 n n C6 H17 6LT sing 58 n n C8 H18 6LT sing 59 n n C9 H19 6LT sing 60 n n N13 H20 6LT sing 61 n n O19 H21 6LT sing 62 n n C32 H22 6LT sing 63 n n C33 H23 6LT sing 64 n n C34 H24 6LT sing 65 n n C34 H25 6LT sing 66 n n C34 H26 6LT sing 67 n n C35 H27 6LT sing 68 n n C35 H28 6LT sing 69 n n C35 H29 6LT sing 70 n n # _atom_sites.entry_id 5JOG _atom_sites.fract_transf_matrix[1][1] 0.009866 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009866 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014577 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN A 1 301 999 ZN ZN . C 3 6LT A 1 302 1 6LT LI1 . D 4 HOH A 1 401 3 HOH HOH . D 4 HOH A 2 402 31 HOH HOH . D 4 HOH A 3 403 7 HOH HOH . D 4 HOH A 4 404 1 HOH HOH . D 4 HOH A 5 405 25 HOH HOH . D 4 HOH A 6 406 2 HOH HOH . D 4 HOH A 7 407 5 HOH HOH . D 4 HOH A 8 408 42 HOH HOH . D 4 HOH A 9 409 18 HOH HOH . D 4 HOH A 10 410 27 HOH HOH . D 4 HOH A 11 411 6 HOH HOH . D 4 HOH A 12 412 24 HOH HOH . D 4 HOH A 13 413 38 HOH HOH . D 4 HOH A 14 414 32 HOH HOH . D 4 HOH A 15 415 36 HOH HOH . D 4 HOH A 16 416 13 HOH HOH . D 4 HOH A 17 417 9 HOH HOH . D 4 HOH A 18 418 29 HOH HOH . D 4 HOH A 19 419 17 HOH HOH . D 4 HOH A 20 420 4 HOH HOH . D 4 HOH A 21 421 10 HOH HOH . D 4 HOH A 22 422 22 HOH HOH . D 4 HOH A 23 423 20 HOH HOH . D 4 HOH A 24 424 14 HOH HOH . D 4 HOH A 25 425 23 HOH HOH . D 4 HOH A 26 426 11 HOH HOH . D 4 HOH A 27 427 15 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 6LT . . . C 3 28.167 -28.415 19.001 1 55.32 ? C1 6LT 302 A 1 HETATM 2 C C3 6LT . . . C 3 27.595 -27.527 17.136 1 57.05 ? C3 6LT 302 A 1 HETATM 3 C C11 6LT . . . C 3 28.958 -29.487 13.194 1 70.97 ? C11 6LT 302 A 1 HETATM 4 C C12 6LT . . . C 3 28.988 -29.711 14.578 1 68.73 ? C12 6LT 302 A 1 HETATM 5 C C14 6LT . . . C 3 28.347 -30.965 15.078 1 65.21 ? C14 6LT 302 A 1 HETATM 6 C C15 6LT . . . C 3 28.904 -29.166 20.104 1 57.11 ? C15 6LT 302 A 1 HETATM 7 C C16 6LT . . . C 3 30.423 -28.911 20.216 1 54.83 ? C16 6LT 302 A 1 HETATM 8 C C17 6LT . . . C 3 31.203 -29.448 18.978 1 57.45 ? C17 6LT 302 A 1 HETATM 9 C C18 6LT . . . C 3 30.971 -28.654 17.652 1 63.06 ? C18 6LT 302 A 1 HETATM 10 C C20 6LT . . . C 3 27.104 -30.9 15.746 1 57.13 ? C20 6LT 302 A 1 HETATM 11 C C21 6LT . . . C 3 26.538 -32.097 16.185 1 58.2 ? C21 6LT 302 A 1 HETATM 12 C C22 6LT . . . C 3 27.18 -33.343 16.005 1 58.26 ? C22 6LT 302 A 1 HETATM 13 C C23 6LT . . . C 3 28.422 -33.407 15.36 1 60.61 ? C23 6LT 302 A 1 HETATM 14 C C24 6LT . . . C 3 29.008 -32.208 14.909 1 65.97 ? C24 6LT 302 A 1 HETATM 15 C C25 6LT . . . C 3 29.533 -28.947 10.214 1 88.13 ? C25 6LT 302 A 1 HETATM 16 C C26 6LT . . . C 3 29.441 -28.44 8.827 1 93.44 ? C26 6LT 302 A 1 HETATM 17 C C28 6LT . . . C 3 30.45 -27.712 8.327 1 98.01 ? C28 6LT 302 A 1 HETATM 18 C C29 6LT . . . C 3 30.04 -27.334 6.975 1 100.89 ? C29 6LT 302 A 1 HETATM 19 N N2 6LT . . . C 3 28.471 -28.328 17.712 1 58.21 ? N2 6LT 302 A 1 HETATM 20 N N4 6LT . . . C 3 26.77 -27.091 17.965 1 54.63 ? N4 6LT 302 A 1 HETATM 21 C C5 6LT . . . C 3 27.093 -27.632 19.269 1 52.55 ? C5 6LT 302 A 1 HETATM 22 C C6 6LT . . . C 3 29.58 -28.974 16.974 1 63.52 ? C6 6LT 302 A 1 HETATM 23 C C7 6LT . . . C 3 29.549 -28.736 15.435 1 68.87 ? C7 6LT 302 A 1 HETATM 24 C C8 6LT . . . C 3 30.039 -27.53 14.86 1 69.34 ? C8 6LT 302 A 1 HETATM 25 C C9 6LT . . . C 3 30.052 -27.334 13.475 1 70.4 ? C9 6LT 302 A 1 HETATM 26 C C10 6LT . . . C 3 29.516 -28.319 12.628 1 74.8 ? C10 6LT 302 A 1 HETATM 27 N N13 6LT . . . C 3 29.43 -28.053 11.228 1 81.42 ? N13 6LT 302 A 1 HETATM 28 O O19 6LT . . . C 3 31.119 -27.228 17.871 1 67.78 ? O19 6LT 302 A 1 HETATM 29 O O27 6LT . . . C 3 29.805 -30.129 10.368 1 89.52 ? O27 6LT 302 A 1 HETATM 30 N N30 6LT . . . C 3 28.889 -27.828 6.819 1 99.13 ? N30 6LT 302 A 1 HETATM 31 N N31 6LT . . . C 3 28.475 -28.501 7.922 1 93.31 ? N31 6LT 302 A 1 HETATM 32 C C32 6LT . . . C 3 27.164 -29.152 7.942 1 84.65 ? C32 6LT 302 A 1 HETATM 33 C C33 6LT . . . C 3 30.79 -26.517 5.959 1 103.72 ? C33 6LT 302 A 1 HETATM 34 C C34 6LT . . . C 3 26.159 -28.241 7.183 1 81.55 ? C34 6LT 302 A 1 HETATM 35 C C35 6LT . . . C 3 27.266 -30.506 7.198 1 81.15 ? C35 6LT 302 A 1 HETATM 36 F F36 6LT . . . C 3 30.016 -26.337 4.839 1 106.03 ? F36 6LT 302 A 1 HETATM 37 F F37 6LT . . . C 3 31.104 -25.319 6.526 1 102.99 ? F37 6LT 302 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 346 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 37 #