data_5JPC # _model_server_result.job_id JdxZsXLo4HALHlW7EmJLuA _model_server_result.datetime_utc '2024-11-18 11:46:21' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5jpc # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":501}' # _entry.id 5JPC # loop_ _exptl.entry_id _exptl.method 5JPC 'NEUTRON DIFFRACTION' 5JPC 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 267.241 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (1S)-1-(7-amino-1H-pyrazolo[4,3-d]pyrimidin-3-yl)-1,4-anhydro-D-ribitol _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5JPC _cell.length_a 83.189 _cell.length_b 83.189 _cell.length_c 67.633 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5JPC _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_467 y-1,x+1,-z+2 -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 -124.7835 72.043787 135.266 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C10 H13 N5 O4' _chem_comp.formula_weight 267.241 _chem_comp.id FMC _chem_comp.mon_nstd_flag . _chem_comp.name (1S)-1-(7-amino-1H-pyrazolo[4,3-d]pyrimidin-3-yl)-1,4-anhydro-D-ribitol _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 FMC doub 85 n y N1 C6 FMC sing 86 n y C2 N3 FMC sing 87 n y C2 H2 FMC sing 88 n n N3 C4 FMC doub 89 n y C4 C5 FMC sing 90 n y C4 C9 FMC sing 91 n y C5 C6 FMC doub 92 n y C5 N7 FMC sing 93 n y C6 N6 FMC sing 94 n n N6 HN6 FMC sing 95 n n N6 HN6A FMC sing 96 n n N7 N8 FMC sing 97 n y N7 HN7 FMC sing 98 n n N8 C9 FMC doub 99 n y C9 C1' FMC sing 100 n n C1' C2' FMC sing 101 n n C1' O4' FMC sing 102 n n C1' H1' FMC sing 103 n n C2' O2' FMC sing 104 n n C2' C3' FMC sing 105 n n C2' H2' FMC sing 106 n n O2' HO2' FMC sing 107 n n C3' O3' FMC sing 108 n n C3' C4' FMC sing 109 n n C3' H3' FMC sing 110 n n O3' HO3' FMC sing 111 n n C4' O4' FMC sing 112 n n C4' C5' FMC sing 113 n n C4' H4' FMC sing 114 n n C5' O5' FMC sing 115 n n C5' H5' FMC sing 116 n n C5' "H5'A" FMC sing 117 n n O5' HO5' FMC sing 118 n n # _atom_sites.entry_id 5JPC _atom_sites.fract_transf_matrix[1][1] 0.012021 _atom_sites.fract_transf_matrix[1][2] 0.00694 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01388 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014786 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FMC A 1 501 501 FMC FMA . C 3 DOD A 1 601 19 DOD DOD . C 3 DOD A 2 602 47 DOD DOD . C 3 DOD A 3 603 5 DOD DOD . C 3 DOD A 4 604 21 DOD DOD . C 3 DOD A 5 605 17 DOD DOD . C 3 DOD A 6 606 63 DOD DOD . C 3 DOD A 7 607 12 DOD DOD . C 3 DOD A 8 608 6 DOD DOD . C 3 DOD A 9 609 10 DOD DOD . C 3 DOD A 10 610 13 DOD DOD . C 3 DOD A 11 611 2 DOD DOD . C 3 DOD A 12 612 20 DOD DOD . C 3 DOD A 13 613 23 DOD DOD . C 3 DOD A 14 614 15 DOD DOD . C 3 DOD A 15 615 57 DOD DOD . C 3 DOD A 16 616 37 DOD DOD . C 3 DOD A 17 617 36 DOD DOD . C 3 DOD A 18 618 1 DOD DOD . C 3 DOD A 19 619 35 DOD DOD . C 3 DOD A 20 620 7 DOD DOD . C 3 DOD A 21 621 11 DOD DOD . C 3 DOD A 22 622 34 DOD DOD . C 3 DOD A 23 623 33 DOD DOD . C 3 DOD A 24 624 65 DOD DOD . C 3 DOD A 25 625 16 DOD DOD . C 3 DOD A 26 626 22 DOD DOD . C 3 DOD A 27 627 8 DOD DOD . C 3 DOD A 28 628 46 DOD DOD . C 3 DOD A 29 629 14 DOD DOD . C 3 DOD A 30 630 32 DOD DOD . C 3 DOD A 31 631 48 DOD DOD . C 3 DOD A 32 632 9 DOD DOD . C 3 DOD A 33 633 4 DOD DOD . C 3 DOD A 34 634 66 DOD DOD . C 3 DOD A 35 635 27 DOD DOD . C 3 DOD A 36 636 26 DOD DOD . C 3 DOD A 37 637 28 DOD DOD . C 3 DOD A 38 638 24 DOD DOD . C 3 DOD A 39 639 18 DOD DOD . C 3 DOD A 40 640 61 DOD DOD . C 3 DOD A 41 641 42 DOD DOD . C 3 DOD A 42 642 29 DOD DOD . C 3 DOD A 43 643 31 DOD DOD . C 3 DOD A 44 644 49 DOD DOD . C 3 DOD A 45 645 40 DOD DOD . C 3 DOD A 46 646 25 DOD DOD . C 3 DOD A 47 647 41 DOD DOD . C 3 DOD A 48 648 3 DOD DOD . C 3 DOD A 49 649 67 DOD DOD . C 3 DOD A 50 650 43 DOD DOD . C 3 DOD A 51 651 45 DOD DOD . C 3 DOD A 52 652 50 DOD DOD . C 3 DOD A 53 653 58 DOD DOD . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 FMC . . . B 2 -59.625 44.311 55.743 1 32.83 ? N1 FMC 501 A 1 HETATM 2 C C2 FMC . . . B 2 -60.295 43.395 56.572 1 31.91 ? C2 FMC 501 A 1 HETATM 3 N N3 FMC . . . B 2 -61.312 42.63 55.958 1 29.07 ? N3 FMC 501 A 1 HETATM 4 C C4 FMC . . . B 2 -61.589 42.802 54.617 1 31.11 ? C4 FMC 501 A 1 HETATM 5 C C5 FMC . . . B 2 -60.925 43.683 53.843 1 32.21 ? C5 FMC 501 A 1 HETATM 6 C C6 FMC . . . B 2 -59.938 44.439 54.439 1 34.36 ? C6 FMC 501 A 1 HETATM 7 N N6 FMC . . . B 2 -59.278 45.312 53.723 1 37.21 ? N6 FMC 501 A 1 HETATM 8 N N7 FMC . . . B 2 -61.449 43.591 52.598 1 31.1 ? N7 FMC 501 A 1 HETATM 9 N N8 FMC . . . B 2 -62.292 42.81 52.567 1 29.9 ? N8 FMC 501 A 1 HETATM 10 C C9 FMC . . . B 2 -62.473 42.253 53.774 1 30.71 ? C9 FMC 501 A 1 HETATM 11 C C1' FMC . . . B 2 -63.549 41.183 54.056 1 30.47 ? C1' FMC 501 A 1 HETATM 12 C C2' FMC . . . B 2 -63.616 40.663 55.488 1 28.36 ? C2' FMC 501 A 1 HETATM 13 O O2' FMC . . . B 2 -63.124 39.308 55.506 1 27.01 ? O2' FMC 501 A 1 HETATM 14 C C3' FMC . . . B 2 -65.081 40.753 55.878 1 27.75 ? C3' FMC 501 A 1 HETATM 15 O O3' FMC . . . B 2 -65.765 39.484 55.744 1 25.02 ? O3' FMC 501 A 1 HETATM 16 C C4' FMC . . . B 2 -65.676 41.772 54.936 1 28.52 ? C4' FMC 501 A 1 HETATM 17 O O4' FMC . . . B 2 -64.85 41.723 53.728 1 30.67 ? O4' FMC 501 A 1 HETATM 18 C C5' FMC . . . B 2 -65.649 43.165 55.579 1 29.39 ? C5' FMC 501 A 1 HETATM 19 O O5' FMC . . . B 2 -66.758 43.905 55.101 1 33.01 ? O5' FMC 501 A 1 HETATM 20 H H2 FMC . . . B 2 -60.045 43.281 57.636 1 30.01 ? H2 FMC 501 A 1 HETATM 21 D DN7 FMC . . . B 2 -61.153 44.125 51.812 1 30.92 ? DN7 FMC 501 A 1 HETATM 22 H H5' FMC . . . B 2 -65.72 43.065 56.667 1 30.58 ? H5' FMC 501 A 1 HETATM 23 H "H5'A" FMC . . . B 2 -64.737 43.663 55.226 1 31.31 ? "H5'A" FMC 501 A 1 HETATM 24 H H1' FMC . . . B 2 -63.351 40.333 53.404 1 29.87 ? H1' FMC 501 A 1 HETATM 25 H H2' FMC . . . B 2 -63.022 41.306 56.136 1 28.81 ? H2' FMC 501 A 1 HETATM 26 D DO2' FMC . . . B 2 -63.808 38.705 55.079 1 29.34 ? DO2' FMC 501 A 1 HETATM 27 H H3' FMC . . . B 2 -65.155 41.128 56.902 1 25.75 ? H3' FMC 501 A 1 HETATM 28 D DO3' FMC . . . B 2 -66.729 39.594 56.001 1 27.09 ? DO3' FMC 501 A 1 HETATM 29 H H4' FMC . . . B 2 -66.704 41.504 54.694 1 29.47 ? H4' FMC 501 A 1 HETATM 30 D DO5' FMC . . . B 2 -67.592 43.368 55.209 1 32.42 ? DO5' FMC 501 A 1 HETATM 31 D DN6 FMC . . . B 2 -59.387 45.333 52.726 1 40.43 ? DN6 FMC 501 A 1 HETATM 32 D DN6A FMC . . . B 2 -58.654 45.963 54.187 1 37.79 ? DN6A FMC 501 A 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 301 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 32 #