data_5JPT # _model_server_result.job_id kLp8UFg2L4W61iv-uTs4mg _model_server_result.datetime_utc '2025-01-25 11:17:28' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5jpt # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":804}' # _entry.id 5JPT # _exptl.entry_id 5JPT _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 59.044 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ACETATE ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5JPT _cell.length_a 118.07 _cell.length_b 118.07 _cell.length_c 252.15 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5JPT _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,J 1 1 B,H,I,K 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG1 THR 123 A THR 123 1_555 D MG MG . A MG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? metalc ? metalc2 A NE2 HIS 479 A HIS 479 1_555 G NI NI . A NI 805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.519 ? metalc ? metalc3 C O3B CDP . A CDP 801 1_555 D MG MG . A MG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.114 ? metalc ? metalc4 D MG MG . A MG 802 1_555 J O HOH . A HOH 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.093 ? metalc ? metalc5 D MG MG . A MG 802 1_555 J O HOH . A HOH 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.088 ? metalc ? metalc6 D MG MG . A MG 802 1_555 J O HOH . A HOH 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? metalc ? metalc7 D MG MG . A MG 802 1_555 J O HOH . A HOH 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.258 ? metalc ? metalc8 B OG1 THR 123 B THR 123 1_555 I MG MG . B MG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? metalc ? metalc9 H O1B CDP . B CDP 801 1_555 I MG MG . B MG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.118 ? metalc ? metalc10 I MG MG . B MG 802 1_555 K O HOH . B HOH 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.068 ? metalc ? metalc11 I MG MG . B MG 802 1_555 K O HOH . B HOH 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.075 ? metalc ? metalc12 I MG MG . B MG 802 1_555 K O HOH . B HOH 905 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.272 ? metalc ? metalc13 I MG MG . B MG 802 1_555 K O HOH . B HOH 906 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.125 ? # _chem_comp.formula 'C2 H3 O2 -1' _chem_comp.formula_weight 59.044 _chem_comp.id ACT _chem_comp.mon_nstd_flag . _chem_comp.name 'ACETATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C O ACT doub 1 n n C OXT ACT sing 2 n n C CH3 ACT sing 3 n n CH3 H1 ACT sing 4 n n CH3 H2 ACT sing 5 n n CH3 H3 ACT sing 6 n n # _atom_sites.entry_id 5JPT _atom_sites.fract_transf_matrix[1][1] 0.00847 _atom_sites.fract_transf_matrix[1][2] 0.00489 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00978 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003966 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 CDP A 1 801 1750 CDP CDP . D 3 MG A 1 802 1751 MG MG . E 4 GOL A 1 803 1752 GOL GOL . F 5 ACT A 1 804 1753 ACT ACT . G 6 NI A 1 805 1754 NI NI . H 2 CDP B 1 801 1750 CDP CDP . I 3 MG B 1 802 1751 MG MG . J 7 HOH A 1 901 1763 HOH HOH . J 7 HOH A 2 902 1764 HOH HOH . J 7 HOH A 3 903 1756 HOH HOH . J 7 HOH A 4 904 1759 HOH HOH . J 7 HOH A 5 905 1769 HOH HOH . J 7 HOH A 6 906 1768 HOH HOH . J 7 HOH A 7 907 1758 HOH HOH . J 7 HOH A 8 908 1762 HOH HOH . J 7 HOH A 9 909 1761 HOH HOH . J 7 HOH A 10 910 1755 HOH HOH . J 7 HOH A 11 911 1760 HOH HOH . J 7 HOH A 12 912 1767 HOH HOH . J 7 HOH A 13 913 1757 HOH HOH . J 7 HOH A 14 914 1765 HOH HOH . J 7 HOH A 15 915 1766 HOH HOH . K 7 HOH B 1 901 1758 HOH HOH . K 7 HOH B 2 902 1757 HOH HOH . K 7 HOH B 3 903 1760 HOH HOH . K 7 HOH B 4 904 1762 HOH HOH . K 7 HOH B 5 905 1759 HOH HOH . K 7 HOH B 6 906 1756 HOH HOH . K 7 HOH B 7 907 1761 HOH HOH . K 7 HOH B 8 908 1755 HOH HOH . K 7 HOH B 9 909 1752 HOH HOH . K 7 HOH B 10 910 1754 HOH HOH . K 7 HOH B 11 911 1753 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C ACT . . . F 5 0.676 -39.75 31.004 1 36.83 ? C ACT 804 A 1 HETATM 2 O O ACT . . . F 5 -0.291 -38.955 31.032 1 32.86 ? O ACT 804 A 1 HETATM 3 O OXT ACT . . . F 5 1.703 -39.393 31.623 1 40.04 1 OXT ACT 804 A 1 HETATM 4 C CH3 ACT . . . F 5 0.615 -41.059 30.274 1 35.53 ? CH3 ACT 804 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 21 _model_server_stats.query_time_ms 323 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 4 #